Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000399 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D024697 2.2e-34 148.3 69 100.0
CSS0033083 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D024697 2.2e-34 148.3 69 100.0
CSS0002368 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D024697 2.7e-16 88.2 43 97.7
QL08p023642 Quercus lobata HOM05D000070 ORTHO05D006683 1.0e-15 86.3 43 93.0
CSS0012964 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D006683 2.3e-15 85.1 43 95.3
CANSAT35G1857 Cannabis sativa HOM05D000070 ORTHO05D006683 8.7e-15 83.2 43 90.7
Manes.15G090100 Manihot esculenta HOM05D000070 ORTHO05D006683 1.1e-14 82.8 43 90.7
Prupe.4G173800 Prunus persica HOM05D000070 ORTHO05D006683 1.5e-14 82.4 43 88.4
Atru.chr2.2387 Acer truncatum HOM05D000070 ORTHO05D006683 1.9e-14 82.0 43 90.7
Dinv14946 Davidia involucrata HOM05D000070 ORTHO05D006683 1.9e-14 82.0 43 90.7
Cfa020618 Carpinus fangiana HOM05D000070 ORTHO05D006683 2.5e-14 81.6 43 88.4
Haze_09387 Corylus avellana HOM05D000070 ORTHO05D006683 2.5e-14 81.6 43 88.4
Duzib170G1082 Durio zibethinus HOM05D000070 ORTHO05D006683 2.5e-14 81.6 43 88.4
Nitab4.5_0000246g0030 Nicotiana tabacum HOM05D000070 ORTHO05D006683 2.5e-14 81.6 43 90.7
Nitab4.5_0002019g0010 Nicotiana tabacum HOM05D000070 ORTHO05D006683 2.5e-14 81.6 43 90.7
Potri.011G141400 Populus trichocarpa HOM05D000070 ORTHO05D006683 2.5e-14 81.6 43 88.4
Sabra11G0127000 Salix brachista HOM05D000070 ORTHO05D006683 2.5e-14 81.6 43 88.4
Actinidia35238 Actinidia chinensis HOM05D000070 ORTHO05D006683 3.3e-14 81.3 43 88.4
MSTRG.14209 Avicennia marina HOM05D000070 ORTHO05D006683 3.3e-14 81.3 43 83.7
CiPaw.11G166700 Carya illinoinensis HOM05D000070 ORTHO05D006683 3.3e-14 81.3 43 86.0
Dinv20210 Davidia involucrata HOM05D000070 ORTHO05D006683 3.3e-14 81.3 43 88.4
Gohir.A01G060800 Gossypium hirsutum HOM05D000070 ORTHO05D006683 3.3e-14 81.3 43 88.4
Gohir.D01G047300 Gossypium hirsutum HOM05D000070 ORTHO05D006683 3.3e-14 81.3 43 88.4
Gorai.002G066800 Gossypium raimondii HOM05D000070 ORTHO05D006683 3.3e-14 81.3 43 88.4
CSS0010724 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D024697 4.3e-14 80.9 42 92.9
MD11G1256000 Malus domestica HOM05D000070 ORTHO05D006683 4.3e-14 80.9 43 88.4
CAN.G162.29 Capsicum annuum HOM05D000070 ORTHO05D006683 5.6e-14 80.5 43 88.4
Gohir.A08G021416 Gossypium hirsutum HOM05D000070 ORTHO05D006683 5.6e-14 80.5 43 88.4
Gohir.D08G032300 Gossypium hirsutum HOM05D000070 ORTHO05D006683 5.6e-14 80.5 43 88.4
Gorai.004G029700 Gossypium raimondii HOM05D000070 ORTHO05D006683 5.6e-14 80.5 43 88.4
Sopen07g030990 Solanum pennellii HOM05D000070 ORTHO05D006683 5.6e-14 80.5 43 88.4
PGSC0003DMG400012401 Solanum tuberosum HOM05D000070 ORTHO05D006683 5.6e-14 80.5 43 88.4
Ciclev10007229m.g Citrus clementina HOM05D000070 ORTHO05D006683 7.3e-14 80.1 43 86.0
Duzib213G1081 Durio zibethinus HOM05D000070 ORTHO05D006683 7.3e-14 80.1 43 86.0
Thecc.07G098900 Theobroma cacao HOM05D000070 ORTHO05D006683 7.3e-14 80.1 43 86.0
Lj1A837T49 Lonicera japonica HOM05D000070 ORTHO05D006683 9.6e-14 79.7 43 86.0
RcHm_v2.0_Chr5g0032311 Rosa chinensis HOM05D000070 ORTHO05D006683 9.6e-14 79.7 43 86.0
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 9.6e-14 79.7 43 86.0
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 1.6e-13 79.0 43 88.4
HanXRQChr13g0391161 Helianthus annuus HOM05D000070 ORTHO05D006683 1.6e-13 79.0 43 88.4
PGR083G0044 Punica granatum HOM05D000070 ORTHO05D006683 1.6e-13 79.0 43 83.7
Solyc07g062770.2 Solanum lycopersicum HOM05D000070 ORTHO05D006683 1.6e-13 79.0 43 86.0
TAR626G0798 Trochodendron aralioides HOM05D000070 ORTHO05D006683 1.6e-13 79.0 43 86.0
GSVIVG01014274001 Vitis vinifera HOM05D000070 ORTHO05D006683 1.6e-13 79.0 43 86.0
CSS0008587 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D024697 2.1e-13 78.6 43 90.7
ClCG05G009240 Citrullus lanatus HOM05D000070 ORTHO05D006683 2.1e-13 78.6 43 83.7
MELO3C019399.2 Cucumis melo HOM05D000070 ORTHO05D006683 2.1e-13 78.6 43 83.7
CsaV3_3G019540 Cucumis sativus L. HOM05D000070 ORTHO05D006683 2.1e-13 78.6 43 83.7
FvH4_3g19240 Fragaria vesca HOM05D000070 ORTHO05D006683 2.1e-13 78.6 43 83.7
FAN11G2237 Fragaria x ananassa HOM05D000070 ORTHO05D006683 2.1e-13 78.6 43 83.7
FAN16G3451 Fragaria x ananassa HOM05D000070 ORTHO05D006683 2.1e-13 78.6 43 83.7
FAN21G0502 Fragaria x ananassa HOM05D000070 ORTHO05D006683 2.1e-13 78.6 43 83.7
FAN25G1528 Fragaria x ananassa HOM05D000070 ORTHO05D006683 2.1e-13 78.6 43 83.7
TWI38G2035 Tripterygium wilfordii HOM05D000070 ORTHO05D006683 2.1e-13 78.6 43 83.7
A03p39160 Brassica napus HOM05D000070 ORTHO05D006683 3.6e-13 77.8 43 86.0
BraA03t13065Z Brassica rapa HOM05D000070 ORTHO05D006683 3.6e-13 77.8 43 86.0
Peaxi162Scf00069g01842 Petunia axillaris HOM05D000070 ORTHO05D006683 3.6e-13 77.8 43 86.0
Sed0024008 Sechium edule HOM05D000070 ORTHO05D006683 3.6e-13 77.8 43 83.7
THA.LOC104810458 Tarenaya hassleriana HOM05D000070 ORTHO05D006683 3.6e-13 77.8 43 86.0
Migut.H01962 Erythranthe guttata HOM05D000070 ORTHO05D006683 8.1e-13 76.6 43 79.1
Hma1.2p1_0416F.1_g148460 Hydrangea macrophylla HOM05D000070 ORTHO05D006683 8.1e-13 76.6 43 83.7
Hma1.2p1_0416F.1_g148470 Hydrangea macrophylla HOM05D000070 ORTHO05D006683 8.1e-13 76.6 43 83.7
PSO541G4369 Papaver somniferum HOM05D000070 ORTHO05D006683 8.1e-13 76.6 43 81.4
SGA_v2.0_scaffold70G23693 Striga asiatica HOM05D000070 ORTHO05D006683 8.1e-13 76.6 43 79.1
AL3G27480 Arabidopsis lyrata HOM05D000070 ORTHO05D006683 1.1e-12 76.3 43 83.7
AT3G15120 Arabidopsis thaliana HOM05D000070 ORTHO05D006683 1.1e-12 76.3 43 83.7
Carub.0003s1477 Capsella rubella HOM05D000070 ORTHO05D006683 1.1e-12 76.3 43 83.7
Thhalv10019880m.g Eutrema salsugineum HOM05D000070 ORTHO05D006683 1.1e-12 76.3 43 83.7
Lj3g0013945 Lotus japonicus HOM05D000070 ORTHO05D006683 1.1e-12 76.3 42 78.6
CARHR090100 Cardamine hirsuta HOM05D000070 ORTHO05D006683 1.4e-12 75.9 43 83.7
EL10Ac4g08256 Beta vulgaris HOM05D000070 ORTHO05D006683 1.8e-12 75.5 43 81.4
Lsat_1_v5_gn_9_98220 Lactuca sativa HOM05D000070 ORTHO05D006683 1.8e-12 75.5 43 83.7
DCAR_013128 Daucus carota HOM05D000070 ORTHO05D006683 2.4e-12 75.1 43 83.7
ECA240G2408 Erigeron canadensis HOM05D000070 ORTHO05D006683 2.4e-12 75.1 43 83.7
Nn1g06393 Nelumbo nucifera HOM05D000070 ORTHO05D006683 2.4e-12 75.1 43 81.4
Sp3g13330 Schrenkiella parvula HOM05D000070 ORTHO05D006683 3.1e-12 74.7 43 81.4
AUR62036148 Chenopodium quinoa HOM05D000070 ORTHO05D006683 4.0e-12 74.3 43 79.1
Eucgr.F01177 Eucalyptus grandis HOM05D000070 ORTHO05D006683 4.0e-12 74.3 43 79.1
SalBow7G0119 Salvia bowleyana HOM05D000070 ORTHO05D006683 4.0e-12 74.3 43 76.7
Aqoxy1G02305 Aquilegia oxysepala HOM05D000070 ORTHO05D006683 5.3e-12 73.9 43 81.4
Lalb_Chr25g0286211 Lupinus albus HOM05D000070 ORTHO05D006683 6.9e-12 73.6 43 79.1
Aa31LG8G2340 Aethionema arabicum HOM05D000070 ORTHO05D006683 9.0e-12 73.2 43 81.4
BcaC01g03897 Brassica carinata HOM05D000070 ORTHO05D006683 9.0e-12 73.2 43 81.4
C03p47510 Brassica napus HOM05D000070 ORTHO05D006683 9.0e-12 73.2 43 81.4
BolC3t17015H Brassica oleracea HOM05D000070 ORTHO05D006683 9.0e-12 73.2 43 81.4
AUR62019488 Chenopodium quinoa HOM05D000070 ORTHO05D006683 9.0e-12 73.2 43 76.7
SHI21480 Sapria himalayana HOM05D000070 ORTHO05D006683 9.0e-12 73.2 43 81.4
ATR0602G265 Amborella trichopoda HOM05D000070 ORTHO05D006683 1.2e-11 72.8 43 76.7
arahy.Tifrunner.gnm1.ann1.48N9B9 Arachis hypogaea HOM05D000070 ORTHO05D006683 1.2e-11 72.8 43 76.7
Medtr2g078630 Medicago truncatula HOM05D000070 ORTHO05D006683 1.2e-11 72.8 43 76.7
Psat5g241520 Pisum sativum HOM05D000070 ORTHO05D006683 1.2e-11 72.8 43 76.7
Lalb_Chr20g0109491 Lupinus albus HOM05D000070 ORTHO05D006683 1.5e-11 72.4 43 79.1
Ah.06g184760 Amaranthus hybridus HOM05D000070 ORTHO05D006683 3.4e-11 71.2 43 74.4
TPR.G7945 Trifolium pratense HOM05D000070 ORTHO05D006683 4.5e-11 70.9 43 74.4
Zm00001eb157300 Zea mays HOM05D000070 ORTHO05D006683 5.8e-11 70.5 43 76.7
Sc07g0002540 Simmondsia chinensis HOM05D000070 ORTHO05D006683 7.6e-11 70.1 43 72.1
Ca_03533_v3 Cicer arietinum L. HOM05D000070 ORTHO05D006683 9.9e-11 69.7 43 74.4
Cc05_g11650 Coffea canephora HOM05D000070 ORTHO05D006683 9.9e-11 69.7 39 79.5
CDE10G0445 Ceratophyllum demersum HOM05D000070 ORTHO05D006683 2.2e-10 68.6 43 72.1
HPP92_024566 Vanilla planifolia HOM05D000070 ORTHO05D006683 2.9e-10 68.2 42 69.0
Glyma.12G227000 Glycine max HOM05D000070 ORTHO05D006683 6.4e-10 67.0 43 72.1
Phvul.005G069600 Phaseolus vulgaris HOM05D000070 ORTHO05D006683 6.4e-10 67.0 43 72.1
Glyma.13G273300 Glycine max HOM05D000070 ORTHO05D006683 1.1e-09 66.2 40 75.0
CDE10G0809 Ceratophyllum demersum HOM05D000070 ORTHO05D006683 1.9e-09 65.5 43 69.8
VMungo1080G0328 Vigna mungo HOM05D000070 ORTHO05D006683 5.4e-09 63.9 43 69.8
SEGI_00098 Sequoiadendron giganteum HOM05D000070 ORTHO05D006683 3.9e-07 57.8 43 67.4
unitig_899.g15571 Utricularia gibba HOM05D000070 ORTHO05D006683 1.9e-06 55.5 28 92.9


User provided reference genes

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