Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033049 Camellia sinensis var. sinensis HOM05D001787 ORTHO05D003488 5.8e-38 160.2 72 100.0
CSS0022460 Camellia sinensis var. sinensis HOM05D001787 ORTHO05D003488 3.8e-37 157.5 72 97.2
FAN15G0901 Fragaria x ananassa HOM05D001787 ORTHO05D003488 2.0e-14 82.0 55 69.1
CDE05G2002 Ceratophyllum demersum HOM05D001762 ORTHO05D001774 1.1e-12 76.3 34 94.1
Os03g0175600 Oryza sativa ssp. japonica HOM05D001787 ORTHO05D003488 1.1e-12 76.3 34 94.1
HPP92_007990 Vanilla planifolia HOM05D001787 ORTHO05D003488 1.1e-12 76.3 34 94.1
Zm00001eb402000 Zea mays HOM05D001787 ORTHO05D003488 1.1e-12 76.3 34 94.1
DCAR_000814 Daucus carota HOM05D001787 ORTHO05D003488 1.4e-12 75.9 34 94.1
MBI19_g20415_MAGBIO Magnolia biondii HOM05D001787 ORTHO05D003488 1.4e-12 75.9 34 94.1
Nn8g38721 Nelumbo nucifera HOM05D001787 ORTHO05D003488 1.4e-12 75.9 35 88.6
Potri.006G222900 Populus trichocarpa HOM05D001787 ORTHO05D003488 1.4e-12 75.9 34 94.1
Prupe.1G406400 Prunus persica HOM05D001787 ORTHO05D003488 1.4e-12 75.9 34 94.1
Sed0024349 Sechium edule HOM05D001787 ORTHO05D003488 1.4e-12 75.9 34 94.1
GSVIVG01035444001 Vitis vinifera HOM05D001787 ORTHO05D003488 1.4e-12 75.9 34 94.1
EL10Ac8g19134 Beta vulgaris HOM05D001787 ORTHO05D003488 2.5e-12 75.1 34 91.2
CANSAT25G0744 Cannabis sativa HOM05D001787 ORTHO05D003488 2.5e-12 75.1 34 91.2
CiPaw.15G090300 Carya illinoinensis HOM05D001787 ORTHO05D003488 2.5e-12 75.1 34 91.2
Haze_18124 Corylus avellana HOM05D001787 ORTHO05D003488 2.5e-12 75.1 34 91.2
ECA234G2841 Erigeron canadensis HOM05D001787 ORTHO05D003488 2.5e-12 75.1 34 91.2
Lj7A234G38 Lonicera japonica HOM05D001787 ORTHO05D003488 2.5e-12 75.1 32 100.0
Hund08712 Selenicereus undatus HOM05D001787 ORTHO05D003488 2.5e-12 75.1 34 91.2
Sc18g0002390 Simmondsia chinensis HOM05D001787 ORTHO05D003488 2.5e-12 75.1 34 91.2
THA.LOC104811224 Tarenaya hassleriana HOM05D001787 ORTHO05D003488 2.5e-12 75.1 34 91.2
TWI34G1008 Tripterygium wilfordii HOM05D001787 ORTHO05D003488 2.5e-12 75.1 34 91.2
TWI63G1842 Tripterygium wilfordii HOM05D001787 ORTHO05D003488 2.5e-12 75.1 34 91.2
Aqoxy7G01096 Aquilegia oxysepala HOM05D001787 ORTHO05D003488 3.2e-12 74.7 34 91.2
CBR_g17055 Chara braunii HOM05D001787 ORTHO05D003488 3.2e-12 74.7 39 84.6
Zm00001eb005710 Zea mays HOM05D001787 ORTHO05D003488 3.2e-12 74.7 34 91.2
ClCG05G015620 Citrullus lanatus HOM05D001787 ORTHO05D003488 4.2e-12 74.3 34 91.2
Ciclev10008710m.g Citrus clementina HOM05D001787 ORTHO05D003488 4.2e-12 74.3 34 91.2
FvH4_2g31270 Fragaria vesca HOM05D001787 ORTHO05D003488 4.2e-12 74.3 34 91.2
FAN20G1398 Fragaria x ananassa HOM05D001787 ORTHO05D003488 4.2e-12 74.3 34 91.2
FAN24G0956 Fragaria x ananassa HOM05D001787 ORTHO05D003488 4.2e-12 74.3 34 91.2
FAN27G0678 Fragaria x ananassa HOM05D001787 ORTHO05D003488 4.2e-12 74.3 34 91.2
MD08G1069600 Malus domestica HOM05D001787 ORTHO05D003488 4.2e-12 74.3 34 91.2
MD15G1052400 Malus domestica HOM05D001787 ORTHO05D003488 4.2e-12 74.3 34 91.2
MD15G1052500 Malus domestica HOM05D001787 ORTHO05D003488 4.2e-12 74.3 34 91.2
Nitab4.5_0004953g0080 Nicotiana tabacum HOM05D001787 ORTHO05D003488 4.2e-12 74.3 34 91.2
Peaxi162Scf00809g00036 Petunia axillaris HOM05D001787 ORTHO05D003488 4.2e-12 74.3 34 91.2
Pp3c16_17560 Physcomitrium patens HOM05D001787 ORTHO05D003488 4.2e-12 74.3 39 79.5
RcHm_v2.0_Chr6g0311531 Rosa chinensis HOM05D001787 ORTHO05D003488 4.2e-12 74.3 34 91.2
Solyc08g062190.3 Solanum lycopersicum HOM05D001787 ORTHO05D003488 4.2e-12 74.3 34 91.2
Sopen08g017770 Solanum pennellii HOM05D001787 ORTHO05D003488 4.2e-12 74.3 34 91.2
Aa31LG3G15190 Aethionema arabicum HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
Ah.10g034000 Amaranthus hybridus HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
ATR0598G171 Amborella trichopoda HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
AL6G22830 Arabidopsis lyrata HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
AT5G12040 Arabidopsis thaliana HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
arahy.Tifrunner.gnm1.ann1.0IZ382 Arachis hypogaea HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
arahy.Tifrunner.gnm1.ann1.DZ6J9T Arachis hypogaea HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
EL10Ac2g03801 Beta vulgaris HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
BcaB01g05433 Brassica carinata HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
A03p05370 Brassica napus HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
C03p06190 Brassica napus HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
C09p64810 Brassica napus HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
BolC3t13126H Brassica oleracea HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
BolC9t59312H Brassica oleracea HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
BraA03t09875Z Brassica rapa HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
AUR62009096 Chenopodium quinoa HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
AUR62020575 Chenopodium quinoa HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
Ca_15840_v3 Cicer arietinum L. HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
Dinv41832 Davidia involucrata HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
Eucgr.C00706 Eucalyptus grandis HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
Thhalv10013923m.g Eutrema salsugineum HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
Glyma.06G055100 Glycine max HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
Gohir.A05G039600 Gossypium hirsutum HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
Gohir.D05G041100 Gossypium hirsutum HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
Gorai.009G041600 Gossypium raimondii HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
HanXRQChr10g0303441 Helianthus annuus HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
Hma1.2p1_0231F.1_g097470 Hydrangea macrophylla HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
Lsat_1_v5_gn_5_82521 Lactuca sativa HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
Lalb_Chr11g0063301 Lupinus albus HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
Medtr3g104850 Medicago truncatula HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
Nn6g35589 Nelumbo nucifera HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
Oeu003980.1 Olea europaea HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
PSO063G6311 Papaver somniferum HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
PSO421G0350 Papaver somniferum HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
Phvul.009G081000 Phaseolus vulgaris HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
PGR031G0779 Punica granatum HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
Sabra06G0172300 Salix brachista HOM05D001787 ORTHO05D003488 7.2e-12 73.6 33 93.9
Sp6g31560 Schrenkiella parvula HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
Hund03302 Selenicereus undatus HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
SGA_v2.0_scaffold21G09471 Striga asiatica HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 91.2
Thecc.09G060900 Theobroma cacao HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
TPR.G3515 Trifolium pratense HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
VMungo1309G1305 Vigna mungo HOM05D001787 ORTHO05D003488 7.2e-12 73.6 34 88.2
MELO3C016902.2 Cucumis melo HOM05D001787 ORTHO05D003488 9.4e-12 73.2 34 88.2
CsaV3_4G035950 Cucumis sativus L. HOM05D001787 ORTHO05D003488 9.4e-12 73.2 34 88.2
Duzib168G1000 Durio zibethinus HOM05D001787 ORTHO05D003488 9.4e-12 73.2 34 88.2
Psat5g035080 Pisum sativum HOM05D001787 ORTHO05D003488 9.4e-12 73.2 34 88.2
Actinidia25700 Actinidia chinensis HOM05D001787 ORTHO05D003488 1.2e-11 72.8 34 88.2
BraA10t44639Z Brassica rapa HOM05D001787 ORTHO05D003488 1.2e-11 72.8 34 85.3
PSO210G6170 Papaver somniferum HOM05D001787 ORTHO05D003488 1.2e-11 72.8 34 88.2
Sed0025039 Sechium edule HOM05D001787 ORTHO05D003488 1.2e-11 72.8 34 88.2
Pp3c5_22250 Physcomitrium patens HOM05D001787 ORTHO05D003488 1.6e-11 72.4 39 76.9
Actinidia29918 Actinidia chinensis HOM05D001787 ORTHO05D003488 2.1e-11 72.0 34 88.2
Cc08_g01340 Coffea canephora HOM05D001787 ORTHO05D003488 2.1e-11 72.0 34 88.2
MSTRG.10525 Avicennia marina HOM05D001787 ORTHO05D003488 2.7e-11 71.6 34 88.2
Cc06_g11880 Coffea canephora HOM05D001787 ORTHO05D003488 2.7e-11 71.6 34 88.2
Dinv42368 Davidia involucrata HOM05D001787 ORTHO05D003488 2.7e-11 71.6 34 88.2
Migut.L01543 Erythranthe guttata HOM05D001787 ORTHO05D003488 2.7e-11 71.6 34 88.2
Gohir.D07G020300 Gossypium hirsutum HOM05D001787 ORTHO05D003488 2.7e-11 71.6 34 88.2
Gorai.001G021100 Gossypium raimondii HOM05D001787 ORTHO05D003488 2.7e-11 71.6 34 88.2
Lj7A682G50 Lonicera japonica HOM05D001787 ORTHO05D003488 2.7e-11 71.6 34 88.2
Peaxi162Scf00219g00512 Petunia axillaris HOM05D001787 ORTHO05D003488 2.7e-11 71.6 34 88.2
SalBow1G2786 Salvia bowleyana HOM05D001787 ORTHO05D003488 2.7e-11 71.6 34 88.2
Solyc07g041280.4 Solanum lycopersicum HOM05D001787 ORTHO05D003488 2.7e-11 71.6 34 88.2
Sopen07g020590 Solanum pennellii HOM05D001787 ORTHO05D003488 2.7e-11 71.6 34 88.2
PGSC0003DMG400019574 Solanum tuberosum HOM05D001787 ORTHO05D003488 2.7e-11 71.6 34 88.2
TAR633G0053 Trochodendron aralioides HOM05D001787 ORTHO05D003488 2.7e-11 71.6 34 85.3
Actinidia38464 Actinidia chinensis HOM05D001787 ORTHO05D003488 3.6e-11 71.2 34 85.3
MSTRG.1688 Avicennia marina HOM05D001787 ORTHO05D003488 3.6e-11 71.2 34 88.2
Carub.0006s1056 Capsella rubella HOM05D001787 ORTHO05D003488 3.6e-11 71.2 34 85.3
Duzib187G1874 Durio zibethinus HOM05D001787 ORTHO05D003488 3.6e-11 71.2 34 85.3
Migut.E01575 Erythranthe guttata HOM05D001787 ORTHO05D003488 3.6e-11 71.2 34 88.2
PSO210G0001 Papaver somniferum HOM05D001787 ORTHO05D003488 3.6e-11 71.2 34 88.2
SalBow1G1427 Salvia bowleyana HOM05D001787 ORTHO05D003488 3.6e-11 71.2 34 88.2
SGA_v2.0_scaffold163G38003 Striga asiatica HOM05D001787 ORTHO05D003488 3.6e-11 71.2 34 88.2
TAR624G1095 Trochodendron aralioides HOM05D001787 ORTHO05D003488 3.6e-11 71.2 34 85.3
Duzib150G0917 Durio zibethinus HOM05D001787 ORTHO05D003488 7.9e-11 70.1 34 85.3
SMO116G0031 Selaginella moellendorffii HOM05D001787 ORTHO05D003488 7.9e-11 70.1 34 82.4
unitig_85.g27252 Utricularia gibba HOM05D001787 ORTHO05D003488 7.9e-11 70.1 34 85.3
Rhsim03G0230100 Rhododendron simsii HOM05D001787 ORTHO05D003488 1.0e-10 69.7 34 88.2
Sc06g0001080 Simmondsia chinensis HOM05D001787 ORTHO05D003488 1.0e-10 69.7 34 85.3
Lj1g0020987 Lotus japonicus HOM05D001787 ORTHO05D003488 1.4e-10 69.3 34 85.3
Mapoly0001s0148 Marchantia polymorpha HOM05D001787 ORTHO05D003488 1.4e-10 69.3 39 71.8
Nitab4.5_0010890g0010 Nicotiana tabacum HOM05D001787 ORTHO05D003488 1.4e-10 69.3 34 85.3
Atru.chr1.3910 Acer truncatum HOM05D001787 ORTHO05D003488 2.3e-10 68.6 56 58.9
Thecc.06G118500 Theobroma cacao HOM05D001787 ORTHO05D003488 3.0e-10 68.2 56 57.1
Lj7C240T12 Lonicera japonica HOM05D001787 ORTHO05D003488 3.9e-10 67.8 31 90.3
ATR0598G124 Amborella trichopoda HOM05D001787 ORTHO05D003488 5.1e-10 67.4 34 85.3
COL.COLO4_09123 Corchorus olitorius HOM05D001787 ORTHO05D003488 6.7e-10 67.0 34 85.3
Nitab4.5_0002842g0080 Nicotiana tabacum HOM05D001787 ORTHO05D003488 6.7e-10 67.0 33 81.8
Manes.16G084000 Manihot esculenta HOM05D001787 ORTHO05D003488 2.5e-09 65.1 27 100.0
TAR383G0339 Trochodendron aralioides HOM05D001787 ORTHO05D003488 2.5e-09 65.1 34 85.3
Hma1.2p1_0496F.1_g166180 Hydrangea macrophylla HOM05D001787 ORTHO05D003488 3.3e-09 64.7 45 68.9
AUR62025177 Chenopodium quinoa HOM05D001787 ORTHO05D003488 4.3e-09 64.3 27 96.3
AUR62028997 Chenopodium quinoa HOM05D001787 ORTHO05D003488 4.3e-09 64.3 27 96.3
COL.COLO4_21119 Corchorus olitorius HOM05D001787 ORTHO05D003488 4.3e-09 64.3 27 96.3
MCO05G194 Micromonas commoda HOM05D001787 ORTHO05D003488 4.3e-09 64.3 39 71.8
CiPaw.01G220200 Carya illinoinensis HOM05D001787 ORTHO05D003488 5.7e-09 63.9 34 76.5
PSO063G0122 Papaver somniferum HOM05D001787 ORTHO05D003488 5.7e-09 63.9 34 82.4
Aqoxy7G01090 Aquilegia oxysepala HOM05D001787 ORTHO05D003488 7.4e-09 63.5 34 79.4
A10p25730 Brassica napus HOM05D001787 ORTHO05D003488 7.4e-09 63.5 27 92.6
THA.LOC104811223 Tarenaya hassleriana HOM05D001787 ORTHO05D003488 7.4e-09 63.5 34 79.4
CAN.G179.21 Capsicum annuum HOM05D001787 ORTHO05D003488 9.7e-09 63.2 26 100.0
MD09G1185100 Malus domestica HOM05D001787 ORTHO05D003488 9.7e-09 63.2 34 76.5
vmacro06319 Vaccinium macrocarpon HOM05D001787 ORTHO05D003488 9.7e-09 63.2 27 96.3
CSS0046300 Camellia sinensis var. sinensis HOM05D001787 ORTHO05D003488 1.7e-08 62.4 34 79.4
Cpa.g.sc126.42 Carica papaya HOM05D001787 ORTHO05D003488 1.7e-08 62.4 26 96.2
Cre11.g467717 Chlamydomonas reinhardtii HOM05D001787 ORTHO05D003488 1.7e-08 62.4 39 66.7
Cre12.g507558 Chlamydomonas reinhardtii HOM05D001787 ORTHO05D003488 1.7e-08 62.4 39 66.7
PSO421G0511 Papaver somniferum HOM05D001787 ORTHO05D003488 1.7e-08 62.4 34 79.4
CSS0036131 Camellia sinensis var. sinensis HOM05D001787 ORTHO05D003488 2.8e-08 61.6 32 84.4
Migut.I01064 Erythranthe guttata HOM05D001787 ORTHO05D003488 2.8e-08 61.6 34 79.4
QL05p008172 Quercus lobata HOM05D001787 ORTHO05D003488 2.8e-08 61.6 35 71.4
CARHR201090 Cardamine hirsuta HOM05D001787 ORTHO05D003488 4.8e-08 60.8 25 96.0
Gohir.A07G020600 Gossypium hirsutum HOM05D001787 ORTHO05D003488 4.8e-08 60.8 26 96.2
Solyc06g064880.3 Solanum lycopersicum HOM05D001787 ORTHO05D003488 4.8e-08 60.8 56 51.8
Sopen06g023400 Solanum pennellii HOM05D001787 ORTHO05D003488 4.8e-08 60.8 56 51.8
PGSC0003DMG402005180 Solanum tuberosum HOM05D001787 ORTHO05D003488 6.3e-08 60.5 56 50.0
Actinidia32179 Actinidia chinensis HOM05D001787 ORTHO05D003488 1.1e-07 59.7 34 73.5
vmacro06316 Vaccinium macrocarpon HOM05D001787 ORTHO05D003488 1.1e-07 59.7 27 88.9
Prupe.3G043200 Prunus persica HOM05D001787 ORTHO05D003488 3.1e-07 58.2 34 70.6
Cfa026457 Carpinus fangiana HOM05D001787 ORTHO05D003488 2.6e-06 55.1 33 69.7
Nitab4.5_0005772g0070 Nicotiana tabacum HOM05D001787 ORTHO05D003488 4.5e-06 54.3 53 49.1
COL.COLO4_00211 Corchorus olitorius HOM05D001787 ORTHO05D003488 5.9e-06 53.9 39 64.1
COL.COLO4_09615 Corchorus olitorius HOM05D001787 ORTHO05D163474 5.9e-06 53.9 49 55.1


User provided reference genes

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