Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 2.7e-203 711.8 372 100.0
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 1.3e-117 427.2 362 67.1
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 3.5e-102 375.9 372 60.5
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 2.3e-101 373.2 379 58.0
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 1.5e-97 360.5 375 56.8
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 3.7e-96 355.9 371 56.9
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 2.5e-92 343.2 388 54.4
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 8.1e-91 338.2 396 54.0
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 8.9e-90 334.7 312 60.9
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.3e-88 330.9 389 51.9
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.3e-88 330.9 389 51.7
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 2.2e-88 330.1 373 53.6
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 2.9e-88 329.7 389 53.7
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 3.7e-88 329.3 382 52.4
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 1.9e-87 327.0 386 52.1
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 1.2e-86 324.3 398 50.3
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 2.1e-86 323.6 381 52.8
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 2.1e-86 323.6 385 52.2
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 4.6e-86 322.4 385 51.4
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 1.0e-85 321.2 378 52.1
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 5.1e-85 318.9 372 55.4
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 6.6e-85 318.5 375 49.6
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 1.9e-84 317.0 375 50.4
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.2e-83 314.3 402 47.5
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 8.1e-83 311.6 396 49.2
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 1.8e-82 310.5 365 50.1
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 5.2e-82 308.9 390 50.8
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 5.8e-81 305.4 384 51.8
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 7.6e-81 305.1 388 51.3
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 4.9e-80 302.4 358 52.8
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 1.4e-79 300.8 392 49.2
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 2.4e-79 300.1 386 49.0
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 9.2e-79 298.1 369 49.6
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 1.6e-78 297.4 396 49.0
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 1.6e-78 297.4 390 48.2
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 2.1e-78 297.0 405 47.7
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 4.6e-78 295.8 409 46.9
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 7.8e-78 295.0 363 52.3
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 1.7e-77 293.9 404 47.8
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 2.3e-77 293.5 374 49.2
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 8.6e-77 291.6 380 49.7
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 1.1e-76 291.2 327 54.1
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.5e-76 290.8 371 48.8
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 9.6e-76 288.1 329 54.1
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.6e-75 287.3 370 48.9
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.8e-75 286.6 372 49.5
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 2.8e-75 286.6 415 45.5
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 1.8e-74 283.9 373 50.9
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 2.4e-74 283.5 388 49.2
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 4.0e-74 282.7 367 51.2
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 9.0e-74 281.6 414 45.9
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 3.4e-73 279.6 389 48.6
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 4.4e-73 279.3 397 45.8
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 7.6e-73 278.5 389 49.6
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 9.9e-73 278.1 390 46.2
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.7e-72 277.3 394 47.5
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 1.7e-72 277.3 397 45.1
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 3.8e-72 276.2 374 50.5
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 7.1e-71 271.9 328 50.6
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 2.1e-70 270.4 369 48.5
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 1.7e-69 267.3 397 46.1
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 6.6e-69 265.4 371 46.1
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 8.7e-69 265.0 407 44.2
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 8.7e-69 265.0 395 48.1
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.5e-68 264.2 387 45.7
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 2.5e-68 263.5 419 43.7
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 7.3e-68 261.9 407 44.2
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 7.3e-68 261.9 388 46.6
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 1.3e-67 261.2 384 46.6
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 2.8e-67 260.0 389 46.3
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 3.6e-67 259.6 378 44.2
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 1.4e-66 257.7 425 44.2
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 9.0e-66 255.0 234 65.8
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 9.0e-66 255.0 360 46.1
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 1.5e-65 254.2 302 52.0
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 1.5e-65 254.2 373 45.0
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.6e-65 253.4 220 67.3
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 7.6e-65 251.9 379 44.3
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 8.4e-64 248.4 359 45.4
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 2.4e-63 246.9 395 44.8
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 9.3e-63 245.0 403 41.2
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 3.5e-62 243.0 370 44.9
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 6.0e-62 242.3 380 42.6
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 1.0e-61 241.5 411 42.6
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 5.1e-61 239.2 381 42.8
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.1e-60 238.0 396 42.4
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 1.5e-60 237.7 394 42.1
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 3.3e-60 236.5 379 43.8
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 2.0e-57 227.3 186 68.3
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 9.9e-57 224.9 382 42.1
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 2.2e-56 223.8 402 41.0
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 4.9e-56 222.6 441 39.9
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 1.1e-55 221.5 442 38.0
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 1.4e-55 221.1 383 41.3
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 4.2e-55 219.5 378 42.3
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 3.0e-53 213.4 404 40.6
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 8.7e-53 211.8 389 41.6
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 7.4e-52 208.8 369 44.4
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 9.6e-52 208.4 332 47.3
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 2.8e-51 206.8 397 39.8
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 3.7e-51 206.5 432 39.8
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 8.2e-51 205.3 426 40.1
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 8.2e-51 205.3 200 59.5
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 1.8e-50 204.1 364 41.5
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 5.3e-50 202.6 384 41.4
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 5.3e-50 202.6 384 41.4
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 5.3e-50 202.6 384 41.4
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 2.6e-49 200.3 426 38.7
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 5.8e-49 199.1 384 41.4
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 5.8e-49 199.1 382 41.6
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 5.8e-49 199.1 384 41.4
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 1.3e-48 198.0 409 39.6
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 3.8e-48 196.4 414 38.6
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 4.9e-48 196.1 548 32.8
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 1.4e-47 194.5 407 39.3
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 3.2e-47 193.4 408 39.0
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 5.5e-47 192.6 388 40.5
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 8.7e-45 185.3 381 40.2
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 3.3e-44 183.3 393 38.7
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 3.3e-44 183.3 393 38.7
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 1.3e-43 181.4 375 40.0
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 8.2e-43 178.7 389 40.1
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 8.2e-43 178.7 389 40.1
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 1.1e-42 178.3 363 38.3
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.8e-42 177.6 408 37.3
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 3.4e-41 173.3 344 41.3
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 5.9e-41 172.6 391 39.9
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.0e-40 171.8 407 38.1
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 5.0e-40 169.5 265 46.4
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.1e-36 158.3 408 36.5
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 3.3e-36 156.8 369 36.6
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 9.7e-36 155.2 424 35.4
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 3.7e-35 153.3 325 40.3
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 4.8e-35 152.9 393 37.4
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 2.4e-34 150.6 341 36.4
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 1.1e-31 141.7 262 41.6
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 1.9e-31 141.0 353 33.7
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 6.1e-22 109.4 216 42.6
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 3.0e-21 107.1 200 41.5
Actinidia25795 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.0e-20 104.4 188 41.0
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 3.3e-20 103.6 316 34.5
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 6.5e-16 89.4 356 30.1
Migut.M01016 Erythranthe guttata HOM05D008010 ORTHO05D010085 5.0e-08 63.2 242 28.1
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 8.5e-08 62.4 154 35.7
MBI10_g23168_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 4.2e-07 60.1 134 35.8
Actinidia37514 Actinidia chinensis HOM05D000378 ORTHO05D006084 4.7e-06 56.6 120 40.0


User provided reference genes

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