Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032867 Camellia sinensis var. sinensis HOM05D013671 ORTHO05D012833 1.8e-235 818.9 426 100.0
CSS0003503 Camellia sinensis var. sinensis HOM05D013671 ORTHO05D012833 2.3e-211 738.8 426 90.4
CSS0044023 Camellia sinensis var. sinensis HOM05D013671 ORTHO05D012833 3.7e-209 731.5 426 88.7
Rhsim08G0029000 Rhododendron simsii HOM05D013671 ORTHO05D012833 4.2e-27 126.7 348 32.2
Rhsim08G0029100 Rhododendron simsii HOM05D021051 ORTHO05D012833 2.0e-24 117.9 377 30.0
vmacro05204 Vaccinium macrocarpon HOM05D013671 ORTHO05D012833 1.2e-21 108.6 162 41.4
Lj2C2T10 Lonicera japonica HOM05D021051 ORTHO05D012833 4.5e-21 106.7 372 28.8
Lj2P186T15 Lonicera japonica HOM05D021051 ORTHO05D012833 5.9e-21 106.3 354 29.1
Lju1319C1T3 Lonicera japonica HOM05D028833 ORTHO05D012833 1.1e-19 102.1 407 26.3
Lj2P199T12 Lonicera japonica HOM05D021051 ORTHO05D012833 2.5e-19 100.9 177 35.0
Rhsim10G0034900 Rhododendron simsii HOM05D013671 ORTHO05D012833 1.0e-17 95.5 179 39.1
Dinv40328 Davidia involucrata HOM05D013671 ORTHO05D012833 1.4e-17 95.1 336 29.8
Lju1319C0T4 Lonicera japonica HOM05D028833 ORTHO05D012833 8.3e-15 85.9 383 25.6
Dinv30645 Davidia involucrata HOM05D013671 ORTHO05D012833 1.9e-11 74.7 314 25.8
Dinv06305 Davidia involucrata HOM05D013671 ORTHO05D012833 3.6e-10 70.5 110 36.4
CANSAT01G1486 Cannabis sativa HOM05D000249 ORTHO05D000206 4.7e-10 70.1 254 28.3
Aqoxy2G03423 Aquilegia oxysepala HOM05D011324 ORTHO05D013448 1.0e-09 68.9 236 28.8
QL11p055392 Quercus lobata HOM05D010066 ORTHO05D009743 5.2e-09 66.6 99 39.4
Aqoxy2G03550 Aquilegia oxysepala HOM05D013671 ORTHO05D010877 2.6e-08 64.3 114 36.0
Lj2P186T14 Lonicera japonica HOM05D021051 ORTHO05D012833 2.6e-08 64.3 75 42.7
Peaxi162Scf00359g00005 Petunia axillaris HOM05D000249 ORTHO05D000206 3.4e-08 63.9 118 36.4
Rhsim06G0096900 Rhododendron simsii HOM05D013671 ORTHO05D012833 4.4e-08 63.5 213 31.0
Ah.09g227600 Amaranthus hybridus HOM05D037678 ORTHO05D012136 7.5e-08 62.8 202 27.2
Thecc.01G112800 Theobroma cacao HOM05D000249 ORTHO05D000206 7.5e-08 62.8 239 27.6
QL01p003691 Quercus lobata HOM05D010066 ORTHO05D009743 9.8e-08 62.4 122 33.6
PGSC0003DMG400016578 Solanum tuberosum HOM05D000249 ORTHO05D000206 9.8e-08 62.4 129 32.6
Lj2P199T8 Lonicera japonica HOM05D021051 ORTHO05D012833 1.3e-07 62.0 83 38.6
CAN.G767.7 Capsicum annuum HOM05D000249 ORTHO05D000206 1.7e-07 61.6 139 32.4
Rhsim10G0150200 Rhododendron simsii HOM05D000249 ORTHO05D000206 2.2e-07 61.2 115 33.0
Actinidia16043 Actinidia chinensis HOM05D000249 ORTHO05D000206 3.7e-07 60.5 240 27.9
Sopen04g023200 Solanum pennellii HOM05D000249 ORTHO05D000206 3.7e-07 60.5 129 31.0
Cc07_g16260 Coffea canephora HOM05D000249 ORTHO05D000206 4.9e-07 60.1 98 35.7
AT5G39560 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 6.3e-07 59.7 164 26.2
Dinv19486 Davidia involucrata HOM05D000249 ORTHO05D000206 6.3e-07 59.7 113 31.9
Hma1.2p1_0375F.1_g138740 Hydrangea macrophylla HOM05D000249 ORTHO05D000206 6.3e-07 59.7 98 32.7
QL11p018809 Quercus lobata HOM05D041046 ORTHO05D021181 6.3e-07 59.7 233 25.3
Aqoxy7G03986 Aquilegia oxysepala HOM05D029118 ORTHO05D026731 1.1e-06 58.9 100 31.0
CSS0027586 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 1.1e-06 58.9 174 28.2
CSS0032255 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 1.1e-06 58.9 174 28.2
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 1.1e-06 58.9 171 29.2
CSS0028906 Camellia sinensis var. sinensis HOM05D000249 ORTHO05D000206 1.4e-06 58.5 161 29.2
CAN.G65.201 Capsicum annuum HOM05D000249 ORTHO05D000206 1.4e-06 58.5 98 35.7
CSS0013471 Camellia sinensis var. sinensis HOM05D000249 ORTHO05D000206 1.8e-06 58.2 161 28.6
Nn1g05186 Nelumbo nucifera HOM05D000249 ORTHO05D000206 1.8e-06 58.2 113 33.6
PSO675G5947 Papaver somniferum HOM05D000249 ORTHO05D000206 1.8e-06 58.2 153 31.4
CSS0020144 Camellia sinensis var. sinensis HOM05D028518 ORTHO05D013819 2.4e-06 57.8 181 28.7
QL11p050365 Quercus lobata HOM05D010066 ORTHO05D009743 2.4e-06 57.8 163 30.7
COL.COLO4_05074 Corchorus olitorius HOM05D009781 ORTHO05D011819 3.1e-06 57.4 149 25.5
COL.COLO4_29429 Corchorus olitorius HOM05D035412 ORTHO05D019051 3.1e-06 57.4 177 27.7
PGR031G1231 Punica granatum HOM05D023452 ORTHO05D019051 3.1e-06 57.4 129 33.3
Cc07_g16240 Coffea canephora HOM05D000249 ORTHO05D000206 4.1e-06 57.0 98 34.7
PGR031G3116 Punica granatum HOM05D023452 ORTHO05D019051 5.4e-06 56.6 116 35.3
Nitab4.5_0005995g0010 Nicotiana tabacum HOM05D000249 ORTHO05D000206 7.0e-06 56.2 243 26.7
Prupe.5G157900 Prunus persica HOM05D013255 ORTHO05D011422 7.0e-06 56.2 184 26.1
PGR044G2517 Punica granatum HOM05D023452 ORTHO05D019051 9.1e-06 55.8 127 33.1


User provided reference genes

Program Settings