Gene: AT5G39560

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G39560
  • Transcript Identifier AT5G39560.1
  • Gene Type Coding gene
  • Location Chr5 : 15841885-15843096 : negative

Gene Family Information

  • ID HOM05D000249
  • #Genes/#Species 1698/85
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G39560.1
  • uniprot Q6NL02

Descriptions

  • Description Galactose oxidase/kelch repeat superfamily protein
  • Computational description Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: shoot, cauline leaf, leaf, stamen; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39756.1); Has 3031 Blast hits to 2577 proteins in 170 species: Archae - 8; Bacteria - 187; Metazoa - 1514; Fungi - 7; Plants - 1159; Viruses - 28; Other Eukaryotes - 128 (source: NCBI BLink).
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003674
ND
Gene Ontologymolecular_function
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0009507
IDA
GOA Databasechloroplast
GO:0009507
HDA
Gene Ontologychloroplast1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015915 Kelch-type beta propeller
IPR001810 F-box domain
IPR036047 F-box-like domain superfamily
IPR006652 Kelch repeat type 1
Mapman id Description
35.1 not assigned.annotated