Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 0.0e+00 1159.8 618 100.0
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 5.5e-286 987.3 682 82.7
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 2.8e-229 798.9 698 65.3
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 1.5e-227 793.1 681 70.2
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 2.5e-222 775.8 690 68.7
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 3.3e-214 748.8 679 65.8
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 2.8e-213 745.7 691 62.1
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 1.1e-212 743.8 684 65.5
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 1.9e-209 733.0 666 67.1
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 1.5e-206 723.4 683 61.9
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 2.1e-205 719.5 711 63.7
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 1.8e-204 716.5 693 62.2
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 4.5e-203 711.8 683 64.4
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 5.8e-203 711.4 682 64.5
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 4.2e-201 705.3 693 59.7
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 7.1e-201 704.5 696 58.6
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 3.5e-200 702.2 681 63.7
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 4.6e-200 701.8 681 63.9
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.3e-199 700.3 683 63.5
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 1.3e-199 700.3 689 63.9
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 3.3e-198 695.7 683 63.5
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 5.6e-198 694.9 696 58.6
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 7.4e-198 694.5 693 58.7
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 2.1e-197 693.0 693 59.3
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 6.2e-197 691.4 678 60.0
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 6.2e-197 691.4 681 63.3
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 1.1e-196 690.6 720 61.5
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 1.8e-196 689.9 680 61.3
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 4.0e-196 688.7 701 58.1
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 2.2e-194 682.9 686 62.0
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.8e-194 682.2 686 62.2
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 1.1e-193 680.6 694 60.5
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 4.2e-193 678.7 676 60.2
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 5.5e-193 678.3 674 60.7
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 9.3e-193 677.6 692 62.1
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 1.3e-191 673.7 689 57.5
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 8.7e-191 671.0 697 59.3
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 1.9e-190 669.8 709 56.3
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 3.3e-190 669.1 693 59.6
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 2.8e-189 666.0 704 58.2
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 3.4e-187 659.1 687 60.1
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 4.5e-187 658.7 714 57.7
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 7.6e-187 657.9 677 63.7
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 3.8e-186 655.6 704 56.0
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 4.2e-185 652.1 694 56.1
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 1.3e-183 647.1 685 57.5
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 1.8e-183 646.7 700 57.4
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 2.3e-183 646.4 689 60.1
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 2.3e-183 646.4 695 56.3
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 5.7e-182 641.7 693 56.0
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 9.7e-182 641.0 696 55.7
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 5.3e-180 635.2 675 57.6
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 6.9e-180 634.8 688 58.9
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 1.2e-179 634.0 693 55.8
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 2.0e-179 633.3 696 57.2
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 7.6e-179 631.3 635 65.2
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 5.0e-178 628.6 691 56.2
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 3.2e-177 625.9 648 58.5
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 9.4e-177 624.4 693 55.1
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 2.7e-176 622.9 730 54.5
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 3.6e-176 622.5 675 57.0
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 6.1e-176 621.7 686 55.8
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 7.9e-176 621.3 675 57.2
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 6.7e-175 618.2 706 59.2
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 8.8e-175 617.8 654 61.5
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 1.1e-174 617.5 668 56.1
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 4.8e-173 612.1 679 54.9
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 4.8e-173 612.1 714 56.9
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 3.1e-172 609.4 671 58.3
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 4.5e-171 605.5 692 55.6
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 2.2e-170 603.2 669 59.0
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 7.2e-169 598.2 673 55.0
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 9.4e-169 597.8 689 56.2
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 1.6e-168 597.0 702 58.3
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 7.9e-168 594.7 675 59.6
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.4e-167 594.0 740 54.9
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 1.8e-167 593.6 683 54.9
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 3.0e-167 592.8 687 54.3
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 3.3e-166 589.3 646 57.1
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 2.8e-165 586.3 697 56.2
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 3.7e-165 585.9 661 54.8
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 3.7e-165 585.9 663 58.7
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 4.8e-165 585.5 678 55.0
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 4.1e-164 582.4 601 57.2
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 3.8e-162 575.9 697 54.9
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 1.4e-159 567.4 693 54.7
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 8.2e-157 558.1 593 60.7
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 1.4e-156 557.4 665 57.6
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 2.2e-154 550.1 660 53.2
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 2.9e-154 549.7 660 53.2
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 3.8e-154 549.3 695 53.4
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 1.9e-153 547.0 677 52.1
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 1.2e-152 544.3 518 59.5
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 5.2e-151 538.9 660 52.6
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 5.2e-151 538.9 679 51.7
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 2.3e-143 513.5 553 56.1
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 2.2e-141 506.9 528 57.4
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 3.7e-141 506.1 667 51.3
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 5.4e-140 502.3 554 55.8
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 4.2e-137 492.7 553 55.0
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 4.0e-135 486.1 437 70.3
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 8.9e-135 485.0 720 48.3
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 2.8e-133 479.9 534 53.7
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 1.0e-130 471.5 530 54.5
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 7.3e-129 465.3 528 54.7
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 4.7e-120 436.0 529 52.0
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 2.9e-117 426.8 470 54.9
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 1.1e-111 408.3 673 44.3
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 3.4e-110 403.3 351 67.8
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 1.9e-108 397.5 677 43.4
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 4.6e-107 392.9 587 46.0
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 1.3e-106 391.3 351 64.4
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 4.9e-93 346.3 317 61.8
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 4.6e-91 339.7 310 62.9
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 6.2e-88 329.3 522 43.1
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 3.4e-86 323.6 311 59.2
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 2.7e-83 313.9 346 54.6
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 4.6e-83 313.2 381 51.7
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 2.9e-69 267.3 355 53.8
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 5.3e-63 246.5 808 29.8
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 1.2e-62 245.4 788 29.8
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 3.2e-60 237.3 303 53.5
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 6.3e-56 223.0 353 43.9
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 2.9e-53 214.2 362 40.3
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 1.9e-52 211.5 187 65.8
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 2.2e-45 188.0 240 51.7
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 2.1e-43 181.4 140 72.1
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.8e-42 178.3 269 45.4
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 4.7e-35 153.7 261 42.5
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 6.1e-35 153.3 182 56.6
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 6.1e-35 153.3 184 43.5
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.2e-32 144.8 125 67.2
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 1.5e-28 132.1 130 60.0
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 2.7e-27 127.9 223 40.8
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 1.8e-23 115.2 438 27.9
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 4.2e-20 104.0 83 66.3
Actinidia02692 Actinidia chinensis HOM05D005511 ORTHO05D006616 1.6e-19 102.1 82 68.3
Sc03g0008960 Simmondsia chinensis HOM05D005511 ORTHO05D006616 5.2e-18 97.1 145 62.1
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 1.5e-09 68.9 373 24.1


User provided reference genes

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