Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032814 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.3e-114 416.4 205 100.0
CSS0008297 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.4e-108 396.4 204 94.1
CSS0044761 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.4e-108 396.4 204 94.1
Dinv06032 Davidia involucrata HOM05D003472 ORTHO05D004200 5.6e-70 268.1 174 74.7
Hma1.2p1_1835F.1_g304660 Hydrangea macrophylla HOM05D003472 ORTHO05D004200 1.6e-69 266.5 195 67.7
Rhsim08G0015900 Rhododendron simsii HOM05D003472 ORTHO05D004200 1.4e-68 263.5 207 65.2
Dinv02502 Davidia involucrata HOM05D003472 ORTHO05D004200 6.9e-68 261.2 204 66.7
Cfa011959 Carpinus fangiana HOM05D003472 ORTHO05D004200 2.0e-67 259.6 171 71.9
Gorai.003G075200 Gossypium raimondii HOM05D003472 ORTHO05D004200 2.0e-67 259.6 197 66.0
COL.COLO4_10760 Corchorus olitorius HOM05D003472 ORTHO05D004200 2.6e-67 259.2 195 68.2
Ciclev10000621m.g Citrus clementina HOM05D003472 ORTHO05D004200 5.8e-67 258.1 201 63.7
vmacro09227 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 5.8e-67 258.1 207 63.3
Haze_09134 Corylus avellana HOM05D003472 ORTHO05D004200 7.6e-67 257.7 194 64.9
vmacro11524 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 7.6e-67 257.7 207 63.3
Lj8C203G7 Lonicera japonica HOM05D003472 ORTHO05D004200 1.3e-66 256.9 165 73.9
Gohir.D03G086900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 2.2e-66 256.1 197 65.5
Haze_09126 Corylus avellana HOM05D003472 ORTHO05D004200 6.5e-66 254.6 191 64.9
Oeu009991.1 Olea europaea HOM05D003472 ORTHO05D004200 6.5e-66 254.6 166 74.1
Oeu009994.1 Olea europaea HOM05D003472 ORTHO05D004200 4.2e-65 251.9 206 63.1
CiPaw.12G079900 Carya illinoinensis HOM05D003472 ORTHO05D004200 5.5e-65 251.5 178 70.2
Potri.003G144000 Populus trichocarpa HOM05D003472 ORTHO05D004200 5.5e-65 251.5 189 66.1
RcHm_v2.0_Chr7g0186361 Rosa chinensis HOM05D003472 ORTHO05D004200 5.5e-65 251.5 193 64.8
FAN08G2572 Fragaria x ananassa HOM05D003472 ORTHO05D004200 7.1e-65 251.1 196 64.3
Gohir.A02G096900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 7.1e-65 251.1 197 64.0
Thecc.03G304700 Theobroma cacao HOM05D003472 ORTHO05D004200 7.1e-65 251.1 195 64.1
Ah.12g052970 Amaranthus hybridus HOM05D003472 ORTHO05D007906 9.3e-65 250.8 189 65.1
EL10Ac5g12473 Beta vulgaris HOM05D003472 ORTHO05D004200 9.3e-65 250.8 190 64.2
Cc08_g16500 Coffea canephora HOM05D003472 ORTHO05D004200 9.3e-65 250.8 192 66.1
QL02p028420 Quercus lobata HOM05D003472 ORTHO05D004200 9.3e-65 250.8 177 67.2
CAN.G567.65 Capsicum annuum HOM05D003472 ORTHO05D004200 1.2e-64 250.4 192 64.1
Sabra03G0104400 Salix brachista HOM05D003472 ORTHO05D004200 2.1e-64 249.6 193 64.2
Thecc.03G305100 Theobroma cacao HOM05D003472 ORTHO05D004200 2.1e-64 249.6 186 67.2
Rhsim07G0079700 Rhododendron simsii HOM05D003472 ORTHO05D004200 2.7e-64 249.2 171 70.2
Ciclev10033306m.g Citrus clementina HOM05D003472 ORTHO05D004200 3.5e-64 248.8 171 69.0
FAN13G1911 Fragaria x ananassa HOM05D003472 ORTHO05D004200 3.5e-64 248.8 196 63.3
Manes.01G053600 Manihot esculenta HOM05D003472 ORTHO05D004200 3.5e-64 248.8 189 63.5
Peaxi162Scf00074g00435 Petunia axillaris HOM05D003472 ORTHO05D004200 3.5e-64 248.8 168 72.0
FvH4_5g11460 Fragaria vesca HOM05D003472 ORTHO05D004200 4.6e-64 248.4 196 63.3
FAN04G2329 Fragaria x ananassa HOM05D003472 ORTHO05D004200 6.0e-64 248.1 191 64.9
DCAR_010023 Daucus carota HOM05D003472 ORTHO05D004200 7.9e-64 247.7 190 64.2
Duzib205G0077 Durio zibethinus HOM05D003472 ORTHO05D004200 7.9e-64 247.7 196 64.3
Thecc.03G304400 Theobroma cacao HOM05D003472 ORTHO05D004200 1.0e-63 247.3 195 64.6
QL02p028401 Quercus lobata HOM05D003472 ORTHO05D004200 1.3e-63 246.9 191 64.9
Sc01g0010480 Simmondsia chinensis HOM05D003472 ORTHO05D004200 1.3e-63 246.9 193 62.2
Lsat_1_v5_gn_3_12621 Lactuca sativa HOM05D003472 ORTHO05D004200 1.8e-63 246.5 173 67.1
Nitab4.5_0002439g0080 Nicotiana tabacum HOM05D003472 ORTHO05D004200 1.8e-63 246.5 192 64.1
Actinidia22188 Actinidia chinensis HOM05D003472 ORTHO05D004200 2.3e-63 246.1 206 61.7
FAN18G4027 Fragaria x ananassa HOM05D003472 ORTHO05D004200 3.0e-63 245.7 196 62.8
AUR62007025 Chenopodium quinoa HOM05D003472 ORTHO05D004200 3.9e-63 245.4 188 62.8
Prupe.5G126300 Prunus persica HOM05D003472 ORTHO05D004200 6.7e-63 244.6 193 63.2
Hund11368 Selenicereus undatus HOM05D003472 ORTHO05D004200 6.7e-63 244.6 193 63.2
Potri.003G143900 Populus trichocarpa HOM05D003472 ORTHO05D004200 8.7e-63 244.2 175 68.0
TAR629G3421 Trochodendron aralioides HOM05D003472 ORTHO05D004200 1.1e-62 243.8 191 64.4
CiPaw.11G115400 Carya illinoinensis HOM05D003472 ORTHO05D004200 1.5e-62 243.4 178 65.2
QL02p028402 Quercus lobata HOM05D003472 ORTHO05D004200 1.5e-62 243.4 178 66.3
MBI12_g15036_MAGBIO Magnolia biondii HOM05D003472 ORTHO05D004200 4.3e-62 241.9 186 64.5
Nn1g00321 Nelumbo nucifera HOM05D003472 ORTHO05D004200 1.3e-61 240.4 208 59.1
Sabra03G0104300 Salix brachista HOM05D003472 ORTHO05D004200 1.3e-61 240.4 175 66.9
Migut.I01165 Erythranthe guttata HOM05D003472 ORTHO05D004200 2.8e-61 239.2 204 61.3
Sopen08g031090 Solanum pennellii HOM05D003472 ORTHO05D004200 3.7e-61 238.8 186 63.4
TWI60G0449 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 4.8e-61 238.4 178 65.7
TWI60G0599 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 4.8e-61 238.4 196 62.2
ECA246G2504 Erigeron canadensis HOM05D003472 ORTHO05D004200 6.3e-61 238.0 175 64.0
Solyc08g082860.4 Solanum lycopersicum HOM05D003472 ORTHO05D004200 6.3e-61 238.0 186 63.4
vmacro13868 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 8.2e-61 237.7 180 65.0
MD06G1113500 Malus domestica HOM05D003472 ORTHO05D004200 1.1e-60 237.3 202 59.9
vmacro22586 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 1.1e-60 237.3 198 61.6
Potri.001G087100 Populus trichocarpa HOM05D003472 ORTHO05D004200 1.4e-60 236.9 162 71.0
Nitab4.5_0006889g0030 Nicotiana tabacum HOM05D003472 ORTHO05D004200 2.4e-60 236.1 174 64.9
Nitab4.5_0006889g0020 Nicotiana tabacum HOM05D003472 ORTHO05D004200 3.1e-60 235.7 192 62.0
SalBow6G0547 Salvia bowleyana HOM05D003472 ORTHO05D004200 3.1e-60 235.7 164 68.9
MSTRG.24857 Avicennia marina HOM05D003472 ORTHO05D004200 9.0e-60 234.2 168 66.7
MSTRG.24856 Avicennia marina HOM05D003472 ORTHO05D004200 3.4e-59 232.3 168 64.9
Manes.02G005400 Manihot esculenta HOM05D003472 ORTHO05D004200 3.4e-59 232.3 163 67.5
Medtr8g099985 Medicago truncatula HOM05D003472 ORTHO05D004200 5.9e-59 231.5 191 61.3
ClCG01G001880 Citrullus lanatus HOM05D003472 ORTHO05D004200 1.0e-58 230.7 209 56.9
CANSAT21G1016 Cannabis sativa HOM05D003472 ORTHO05D004200 1.7e-58 229.9 166 66.9
Sabra01G0063300 Salix brachista HOM05D003472 ORTHO05D004200 2.9e-58 229.2 163 68.7
Glyma.05G219800 Glycine max HOM05D003472 ORTHO05D004200 8.5e-58 227.6 161 65.8
TPR.G3439 Trifolium pratense HOM05D003472 ORTHO05D004200 1.9e-57 226.5 183 61.7
Lalb_Chr05g0223891 Lupinus albus HOM05D003472 ORTHO05D004200 9.3e-57 224.2 161 65.2
Psat7g022760 Pisum sativum HOM05D003472 ORTHO05D004200 1.2e-56 223.8 156 67.9
Ca_17451_v3 Cicer arietinum L. HOM05D003472 ORTHO05D004200 1.6e-56 223.4 158 67.7
Eucgr.E01027 Eucalyptus grandis HOM05D003472 ORTHO05D004200 2.1e-56 223.0 160 64.4
Sed0019208 Sechium edule HOM05D003472 ORTHO05D004200 2.7e-56 222.6 202 55.9
Gorai.007G020500 Gossypium raimondii HOM05D003472 ORTHO05D004200 3.6e-56 222.2 175 62.3
Ciclev10023271m.g Citrus clementina HOM05D003472 ORTHO05D004200 4.6e-56 221.9 152 69.7
Gohir.A11G019500 Gossypium hirsutum HOM05D003472 ORTHO05D004200 7.9e-56 221.1 175 62.3
Gohir.D11G019200 Gossypium hirsutum HOM05D003472 ORTHO05D004200 7.9e-56 221.1 175 62.3
PGR042G1639 Punica granatum HOM05D003472 ORTHO05D004200 7.9e-56 221.1 197 55.8
Aqoxy5G04302 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 1.0e-55 220.7 188 60.1
MELO3C005751.2 Cucumis melo HOM05D003472 ORTHO05D004200 8.7e-55 217.6 166 60.2
arahy.Tifrunner.gnm1.ann1.5YP9G9 Arachis hypogaea HOM05D003472 ORTHO05D004200 1.5e-54 216.9 180 61.1
VMungo0251G0959 Vigna mungo HOM05D003472 ORTHO05D004200 1.5e-54 216.9 183 58.5
TPR.G40004 Trifolium pratense HOM05D003472 ORTHO05D004200 1.9e-54 216.5 180 59.4
arahy.Tifrunner.gnm1.ann1.69PAS2 Arachis hypogaea HOM05D003472 ORTHO05D004200 4.3e-54 215.3 190 61.1
HPP92_014452 Vanilla planifolia HOM05D003472 ORTHO05D004200 5.7e-54 214.9 192 54.2
Phvul.002G301500 Phaseolus vulgaris HOM05D003472 ORTHO05D004200 1.3e-53 213.8 161 62.1
Nitab4.5_0002439g0130 Nicotiana tabacum HOM05D003472 ORTHO05D004200 1.6e-53 213.4 159 66.0
CDE04G3265 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 3.7e-53 212.2 188 56.9
CsaV3_5G002020 Cucumis sativus L. HOM05D003472 ORTHO05D004200 6.3e-53 211.5 200 52.5
SGA_v2.0_scaffold198G41058 Striga asiatica HOM05D003472 ORTHO05D004200 6.3e-53 211.5 192 56.2
Lj4g0019041 Lotus japonicus HOM05D003472 ORTHO05D004200 3.1e-52 209.1 163 58.9
PGR031G2218 Punica granatum HOM05D003472 ORTHO05D004200 6.9e-52 208.0 170 58.8
ATR0757G010 Amborella trichopoda HOM05D003472 ORTHO05D004200 1.2e-51 207.2 190 54.7
CiPaw.11G115500 Carya illinoinensis HOM05D003472 ORTHO05D004200 1.7e-50 203.4 127 71.7
CANSAT21G0971 Cannabis sativa HOM05D003472 ORTHO05D004200 3.8e-50 202.2 191 54.5
PGR042G3552 Punica granatum HOM05D003472 ORTHO05D004200 2.5e-49 199.5 170 56.5
Aqoxy5G04304 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 4.2e-49 198.7 171 58.5
CARHR231440 Cardamine hirsuta HOM05D003472 ORTHO05D004200 5.5e-49 198.4 180 58.3
THA.LOC104806447 Tarenaya hassleriana HOM05D003472 ORTHO05D004200 7.9e-48 194.5 190 56.8
AL7G29240 Arabidopsis lyrata HOM05D003472 ORTHO05D004200 3.9e-47 192.2 175 56.6
AT4G24040 Arabidopsis thaliana HOM05D003472 ORTHO05D004200 3.9e-47 192.2 169 58.6
Carub.0007s1705 Capsella rubella HOM05D003472 ORTHO05D004200 8.8e-47 191.0 206 51.0
Thhalv10024684m.g Eutrema salsugineum HOM05D003472 ORTHO05D004200 1.1e-46 190.7 208 52.4
unitig_747.g22055 Utricularia gibba HOM05D003472 ORTHO05D004200 1.5e-46 190.3 179 54.7
Aa31LG6G7240 Aethionema arabicum HOM05D003472 ORTHO05D004200 3.3e-46 189.1 198 55.1
Sp7g22010 Schrenkiella parvula HOM05D003472 ORTHO05D004200 4.4e-46 188.7 212 49.1
BcaNung01109 Brassica carinata HOM05D003472 ORTHO05D004200 5.7e-46 188.3 167 58.7
GSVIVG01019610001 Vitis vinifera HOM05D003472 ORTHO05D004200 2.2e-45 186.4 170 56.5
A01p15310 Brassica napus HOM05D003472 ORTHO05D004200 6.3e-45 184.9 167 57.5
BraA01t01475Z Brassica rapa HOM05D003472 ORTHO05D004200 6.3e-45 184.9 167 57.5
BolC1t01851H Brassica oleracea HOM05D003472 ORTHO05D004200 1.4e-44 183.7 197 51.3
BcaC09g50919 Brassica carinata HOM05D003472 ORTHO05D004200 4.1e-44 182.2 197 50.8
C01p19260 Brassica napus HOM05D003472 ORTHO05D004200 4.1e-44 182.2 197 50.8
PGR031G0912 Punica granatum HOM05D003472 ORTHO05D004200 5.3e-44 181.8 170 55.3
Cpa.g.sc15.13 Carica papaya HOM05D003472 ORTHO05D004200 5.9e-43 178.3 111 74.8
SHI06941 Sapria himalayana HOM05D003472 ORTHO05D004200 1.7e-42 176.8 155 52.9
AagrBONN_evm.TU.Sc2ySwM_117.3367 Anthoceros agrestis HOM05D003472 ORTHO05D004200 1.8e-39 166.8 157 51.6
unitig_1.g29357 Utricularia gibba HOM05D003472 ORTHO05D004200 1.8e-39 166.8 140 57.9
Zm00001eb021270 Zea mays HOM05D003472 ORTHO05D004200 1.8e-39 166.8 195 44.1
Mapoly0055s0045 Marchantia polymorpha HOM05D003472 ORTHO05D004200 2.3e-39 166.4 188 47.3
SMO165G0094 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 6.7e-39 164.9 159 50.3
A03p54940 Brassica napus HOM05D003472 ORTHO05D004200 2.0e-38 163.3 170 52.9
BraA03t14559Z Brassica rapa HOM05D003472 ORTHO05D004200 2.0e-38 163.3 170 52.9
Pp3c24_9748 Physcomitrium patens HOM05D003472 ORTHO05D004200 2.6e-38 162.9 157 53.5
Pp3c24_9750 Physcomitrium patens HOM05D003472 ORTHO05D004200 2.6e-38 162.9 157 53.5
Pp3c23_11240 Physcomitrium patens HOM05D003472 ORTHO05D004200 5.7e-38 161.8 157 52.2
Os10g0521000 Oryza sativa ssp. japonica HOM05D003472 ORTHO05D004200 1.3e-37 160.6 172 49.4
BcaNung05698 Brassica carinata HOM05D003472 ORTHO05D004200 2.8e-37 159.5 173 51.4
BcaNung06470 Brassica carinata HOM05D003472 ORTHO05D004200 2.8e-37 159.5 173 51.4
C07p53330 Brassica napus HOM05D003472 ORTHO05D004200 2.8e-37 159.5 173 51.4
SMO272G0034 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 6.3e-37 158.3 159 49.1
BolC7t45827H Brassica oleracea HOM05D003472 ORTHO05D004200 1.4e-36 157.1 194 47.9
Pp3c16_7830 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.8e-36 156.8 177 44.6
SMO119G0122 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 1.2e-35 154.1 157 49.0
SMO165G0115 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 1.6e-35 153.7 175 46.9
Pp3c5_16470 Physcomitrium patens HOM05D003472 ORTHO05D004200 5.9e-35 151.8 170 44.1
ClCG01G001870 Citrullus lanatus HOM05D003472 ORTHO05D004200 5.0e-34 148.7 141 52.5
HanXRQChr06g0166301 Helianthus annuus HOM05D003472 ORTHO05D004200 6.5e-34 148.3 89 75.3
arahy.Tifrunner.gnm1.ann1.TJXZ67 Arachis hypogaea HOM05D003472 ORTHO05D004200 1.1e-33 147.5 170 47.1
SEGI_04080 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 3.2e-33 146.0 159 49.1
PSO170G3423 Papaver somniferum HOM05D003472 ORTHO05D004200 1.0e-31 141.0 84 72.6
CBR_g24063 Chara braunii HOM05D003472 ORTHO05D004200 2.0e-30 136.7 135 48.9
Mapoly0014s0133 Marchantia polymorpha HOM05D003472 ORTHO05D004200 2.6e-30 136.3 168 43.5
CDE07G1940 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 5.3e-28 128.6 74 73.0
Lj8C203T14 Lonicera japonica HOM05D003472 ORTHO05D004200 2.7e-27 126.3 90 68.9
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 1.9e-25 120.2 68 82.4
Dinv02499 Davidia involucrata HOM05D003472 ORTHO05D004200 4.4e-22 109.0 85 63.5
Cre03.g195600 Chlamydomonas reinhardtii HOM05D003472 ORTHO05D004200 7.0e-20 101.7 94 52.1
PRCOL_00003576 Prasinoderma coloniale HOM05D003472 ORTHO05D004200 1.6e-11 73.9 95 38.9
MCO05G351 Micromonas commoda HOM05D003472 ORTHO05D004200 5.0e-10 68.9 76 42.1


User provided reference genes

Program Settings