Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.1e-196 689.9 364 100.0
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.4e-164 583.2 363 86.8
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 1.7e-162 576.2 384 81.0
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.7e-160 568.9 366 83.6
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 3.0e-159 565.5 366 82.8
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 2.0e-158 562.8 382 79.6
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 4.4e-150 535.0 364 79.7
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 3.8e-146 521.9 365 78.4
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 5.6e-145 518.1 366 77.6
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 6.6e-138 494.6 366 75.1
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 4.3e-137 491.9 361 74.8
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 3.6e-136 488.8 370 73.0
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 1.4e-135 486.9 362 71.3
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 1.8e-135 486.5 366 72.7
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 2.0e-134 483.0 364 71.7
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 2.6e-134 482.6 364 73.4
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 1.3e-133 480.3 364 73.6
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 8.3e-133 477.6 363 72.5
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.4e-132 476.9 366 72.1
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 1.9e-132 476.5 369 71.8
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 2.4e-132 476.1 365 72.6
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 1.6e-131 473.4 369 69.4
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 2.7e-131 472.6 366 70.2
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 3.5e-131 472.2 368 70.1
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 4.6e-131 471.9 365 70.7
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.0e-130 470.7 367 70.3
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 3.0e-130 469.2 358 71.5
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.1e-129 467.2 367 70.6
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.1e-129 467.2 367 70.6
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 1.5e-129 466.8 362 71.3
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 1.5e-129 466.8 366 71.6
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 2.5e-129 466.1 366 71.6
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 7.3e-129 464.5 382 68.8
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 9.5e-129 464.2 367 69.8
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 9.5e-129 464.2 367 70.6
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 1.2e-128 463.8 364 71.4
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 2.1e-128 463.0 366 68.3
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 4.7e-128 461.8 368 69.0
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 6.2e-128 461.5 369 68.6
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 6.2e-128 461.5 368 70.1
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 6.2e-128 461.5 366 71.0
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 1.1e-127 460.7 400 66.8
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.4e-127 460.3 358 69.3
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 1.8e-127 459.9 371 70.1
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 1.8e-127 459.9 369 70.2
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.1e-127 459.1 359 71.6
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.5e-126 456.8 359 71.0
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 4.4e-126 455.3 363 70.2
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 7.5e-126 454.5 367 69.2
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 7.5e-126 454.5 361 67.9
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.3e-125 453.8 363 68.6
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 4.9e-125 451.8 358 69.6
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 1.4e-124 450.3 361 69.3
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 7.1e-124 448.0 363 68.6
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 2.1e-123 446.4 369 67.2
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 2.7e-123 446.0 369 67.8
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 2.7e-123 446.0 384 67.7
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 2.7e-123 446.0 382 67.3
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 4.6e-123 445.3 366 68.6
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 6.0e-123 444.9 376 67.3
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 7.8e-123 444.5 368 66.8
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.3e-122 443.7 376 66.8
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 4.3e-121 438.7 369 67.5
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 5.6e-121 438.3 361 65.7
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 9.5e-121 437.6 361 65.1
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 3.1e-119 432.6 430 58.1
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 1.5e-118 430.3 361 64.8
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 3.4e-118 429.1 364 66.5
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 7.6e-118 427.9 358 65.1
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 2.9e-117 426.0 368 66.0
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 2.4e-116 422.9 367 64.0
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 4.6e-115 418.7 371 64.4
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 1.3e-114 417.2 366 64.5
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 5.1e-114 415.2 382 63.1
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.9e-113 413.3 361 65.7
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.6e-112 410.2 351 66.1
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 6.2e-112 408.3 362 64.6
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.2e-110 404.1 342 67.3
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 2.6e-110 402.9 379 62.8
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 9.9e-110 401.0 367 62.7
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 3.8e-109 399.1 341 63.0
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 8.4e-109 397.9 366 63.4
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 4.2e-108 395.6 382 60.2
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.6e-107 393.7 366 63.1
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 1.6e-107 393.7 372 62.6
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 3.3e-105 386.0 366 62.0
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 4.8e-104 382.1 364 58.8
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 5.3e-103 378.6 391 56.3
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.6e-102 376.3 366 60.7
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 3.4e-102 375.9 363 59.5
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 8.4e-101 371.3 367 58.6
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 1.1e-100 370.9 365 57.5
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 1.1e-100 370.9 378 57.1
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 5.4e-100 368.6 363 59.5
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 1.2e-99 367.5 365 57.3
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 2.7e-99 366.3 385 55.8
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 1.0e-98 364.4 364 57.1
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 8.7e-98 361.3 369 59.6
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 5.6e-97 358.6 433 51.3
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.4e-95 354.0 365 58.1
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 1.2e-94 350.9 371 53.4
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 2.0e-94 350.1 357 57.1
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 1.2e-91 340.9 381 53.8
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 2.1e-91 340.1 381 53.5
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 3.5e-91 339.3 382 53.9
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 6.7e-90 335.1 383 52.7
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 3.5e-83 312.8 379 51.2
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 3.5e-83 312.8 379 51.2
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 4.6e-83 312.4 381 50.7
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 7.9e-83 311.6 382 51.6
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 1.0e-82 311.2 381 50.4
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 1.1e-81 307.8 375 51.7
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 3.3e-81 306.2 379 51.2
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 1.1e-79 301.2 343 54.5
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 1.8e-79 300.4 391 44.8
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 9.0e-79 298.1 235 69.4
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 1.2e-78 297.7 242 68.6
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.9e-69 266.5 298 53.0
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 4.2e-68 262.7 363 46.0
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 7.0e-63 245.4 436 38.5
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.0e-61 241.5 182 69.8
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 2.5e-60 236.9 343 41.4
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 2.6e-57 226.9 303 48.5
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 2.8e-48 196.8 211 56.4
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 2.4e-47 193.7 367 37.1
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.6e-43 181.0 158 65.2
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 4.9e-40 169.5 124 75.8
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 1.1e-39 168.3 119 74.8
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 1.8e-18 97.8 63 71.4
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 3.4e-17 93.6 103 51.5
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 9.8e-17 92.0 56 78.6
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.3e-16 91.7 115 51.3
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 8.3e-16 89.0 56 76.8
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 5.4e-15 86.3 232 29.7
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 1.6e-14 84.7 402 24.6
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 2.3e-13 80.9 249 30.9
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 3.3e-12 77.0 61 70.5
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 1.6e-11 74.7 50 74.0
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 2.3e-10 70.9 61 68.9
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 3.1e-10 70.5 57 71.9
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 6.8e-10 69.3 61 67.2
Cfa025636 Carpinus fangiana HOM05D002744 ORTHO05D006546 2.1e-06 57.8 414 25.1


User provided reference genes

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