Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 0.0e+00 1174.5 584 100.0
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.2e-221 773.5 730 58.9
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 9.7e-216 753.8 716 59.5
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.1e-214 748.8 655 62.3
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 3.6e-202 708.8 681 57.7
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.3e-199 700.3 718 54.6
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 3.6e-186 655.6 603 60.5
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 2.8e-175 619.4 712 52.4
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 4.1e-174 615.5 708 51.0
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 1.3e-172 610.5 713 50.9
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 1.1e-171 607.4 707 50.1
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 6.8e-169 598.2 622 56.1
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 7.5e-168 594.7 728 49.9
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 1.1e-166 590.9 709 49.6
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.1e-166 590.9 708 49.7
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 1.6e-165 587.0 721 48.5
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 3.5e-165 585.9 719 47.8
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 5.0e-164 582.0 712 49.6
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 8.6e-164 581.3 674 51.5
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 8.6e-164 581.3 723 49.1
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 1.1e-163 580.9 718 48.6
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 2.5e-163 579.7 688 50.1
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.2e-162 577.4 706 48.9
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 1.4e-161 573.9 702 48.3
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 1.2e-160 570.9 714 49.4
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 2.6e-160 569.7 696 48.6
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 9.8e-160 567.8 713 49.4
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 1.4e-158 563.9 714 49.4
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.3e-156 556.6 703 48.8
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.5e-155 553.1 718 47.1
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 2.5e-155 553.1 718 46.8
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 7.3e-155 551.6 718 47.1
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 2.8e-154 549.7 720 47.8
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 6.2e-154 548.5 703 46.9
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 8.0e-154 548.1 718 46.7
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 1.1e-153 547.7 596 52.2
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.5e-152 543.9 718 46.9
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.6e-152 543.1 718 46.8
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 8.3e-151 538.1 751 44.3
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 1.9e-150 537.0 712 46.6
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 2.4e-150 536.6 707 47.4
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 7.1e-150 535.0 710 43.7
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.1e-149 533.5 727 45.9
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 1.0e-148 531.2 704 47.6
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 1.7e-148 530.4 711 48.2
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 1.7e-148 530.4 719 44.5
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 6.6e-148 528.5 715 46.2
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 6.6e-148 528.5 718 46.4
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 4.3e-147 525.8 693 47.5
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 9.5e-147 524.6 718 46.0
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.6e-146 523.9 718 46.0
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 1.6e-146 523.9 733 44.5
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 2.1e-146 523.5 716 45.4
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 3.1e-145 519.6 704 46.7
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 4.0e-145 519.2 711 46.0
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 5.2e-145 518.8 718 44.8
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 1.2e-144 517.7 718 44.2
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 3.4e-144 516.2 697 44.5
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 7.6e-144 515.0 711 43.5
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 7.6e-144 515.0 704 46.4
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 2.2e-143 513.5 719 44.4
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 3.7e-143 512.7 748 42.8
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 4.9e-143 512.3 708 45.1
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 9.2e-142 508.1 696 44.7
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 1.6e-141 507.3 561 51.2
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 6.0e-141 505.4 707 42.6
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.0e-140 504.6 721 43.1
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 1.7e-140 503.8 671 45.6
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 3.9e-140 502.7 705 44.3
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 6.6e-140 501.9 725 44.0
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 1.1e-139 501.1 731 44.9
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 1.9e-139 500.4 658 46.8
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 2.5e-139 500.0 673 44.0
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 5.6e-139 498.8 706 42.5
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 9.6e-139 498.0 540 50.7
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 1.2e-138 497.7 682 45.2
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 1.2e-138 497.7 718 43.0
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 2.8e-138 496.5 711 43.3
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 3.6e-138 496.1 715 43.8
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 8.1e-138 495.0 709 42.3
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 1.8e-137 493.8 711 42.1
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 4.0e-137 492.7 401 63.1
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 6.8e-137 491.9 687 44.7
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 1.2e-136 491.1 670 45.4
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 2.6e-136 490.0 660 46.2
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 4.9e-135 485.7 686 45.2
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 4.9e-135 485.7 706 41.8
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 4.9e-135 485.7 706 41.8
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 4.9e-135 485.7 544 50.4
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 8.4e-135 485.0 647 45.4
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 1.9e-134 483.8 574 48.6
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 1.9e-134 483.8 700 41.0
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 2.4e-134 483.4 686 45.0
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 2.4e-134 483.4 467 55.9
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 3.2e-134 483.0 684 44.6
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 4.2e-134 482.6 688 44.5
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 5.4e-134 482.3 396 62.1
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 2.1e-133 480.3 684 43.7
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 3.3e-131 473.0 482 52.7
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 3.3e-131 473.0 705 43.4
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 4.3e-131 472.6 707 43.4
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 1.5e-128 464.2 667 43.6
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 7.6e-128 461.8 398 60.6
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 1.7e-127 460.7 621 45.6
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.3e-124 451.1 315 74.0
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 3.0e-124 449.9 401 58.4
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 1.3e-119 434.5 511 47.7
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 1.1e-113 414.8 413 54.7
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 5.5e-110 402.5 533 46.5
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.9e-107 394.0 433 51.3
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 3.5e-101 373.2 660 39.1
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 7.7e-96 355.5 530 42.3
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 8.5e-95 352.1 414 45.9
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 1.3e-90 338.2 408 47.5
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 1.3e-90 338.2 452 42.3
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 1.7e-90 337.8 579 38.7
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 1.0e-84 318.5 408 45.1
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 2.0e-80 304.3 479 39.0
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 4.7e-77 293.1 519 36.8
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 2.6e-75 287.3 396 42.7
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 1.3e-74 285.0 188 75.5
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 1.3e-71 275.0 388 41.8
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 5.0e-71 273.1 394 41.4
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 2.2e-66 257.7 188 69.1
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.7e-63 248.1 176 70.5
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 4.4e-59 233.4 312 45.2
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 3.0e-47 194.1 458 30.6
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 8.0e-45 186.0 189 58.7
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 6.8e-44 183.0 178 53.4
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 9.8e-43 179.1 176 51.7
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 2.1e-29 134.8 145 51.0
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 7.8e-24 116.3 102 63.7
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 3.8e-18 97.4 309 32.0
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 4.6e-16 90.5 352 26.4
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 7.1e-09 66.6 290 27.6
GSVIVG01006141001 Vitis vinifera HOM05D004501 ORTHO05D004944 2.1e-08 65.1 47 66.0


User provided reference genes

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