Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 5.2e-241 837.4 454 100.0
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 1.6e-149 533.5 456 64.3
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 2.5e-142 509.6 462 64.1
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 1.7e-138 496.9 468 59.2
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 6.3e-138 495.0 438 62.3
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.1e-134 484.2 482 62.9
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 9.4e-134 481.1 470 62.1
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 1.6e-133 480.3 460 57.4
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 6.1e-133 478.4 455 58.9
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 8.0e-133 478.0 465 57.0
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 3.9e-132 475.7 457 56.7
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 8.8e-132 474.6 472 62.3
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 2.6e-131 473.0 456 58.6
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 3.3e-131 472.6 469 62.7
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 5.7e-131 471.9 467 61.7
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 9.7e-131 471.1 463 62.9
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 1.7e-130 470.3 466 56.2
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 4.8e-130 468.8 460 58.5
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 1.1e-129 467.6 466 57.9
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 2.4e-129 466.5 462 57.8
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 2.0e-128 463.4 468 55.8
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 2.6e-128 463.0 465 56.8
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 5.9e-128 461.8 406 62.3
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 1.7e-127 460.3 458 56.3
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 2.9e-127 459.5 462 56.1
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 2.9e-127 459.5 462 56.3
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 3.8e-127 459.1 466 54.5
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 3.8e-127 459.1 448 54.9
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 3.8e-127 459.1 461 56.2
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 6.5e-127 458.4 479 55.5
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 6.5e-127 458.4 479 55.5
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 1.5e-126 457.2 460 57.2
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 1.5e-126 457.2 462 55.6
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.5e-126 457.2 404 60.6
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 3.2e-126 456.1 464 56.7
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 9.4e-126 454.5 404 60.6
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.6e-125 452.6 470 54.5
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.8e-124 450.3 404 60.1
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.8e-124 450.3 470 54.3
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 8.8e-124 448.0 454 54.4
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 8.8e-124 448.0 462 55.4
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 8.8e-124 448.0 465 59.8
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 2.6e-123 446.4 477 54.9
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 1.7e-122 443.7 473 54.3
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.1e-121 441.0 470 58.5
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 3.1e-121 439.5 468 58.5
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 9.1e-121 438.0 455 58.9
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.6e-120 437.2 467 58.7
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 2.7e-120 436.4 458 54.6
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.5e-120 435.6 469 57.6
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 5.9e-120 435.3 479 55.9
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 8.5e-119 431.4 479 53.2
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 1.5e-118 430.6 461 54.7
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 9.4e-118 427.9 472 57.2
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 1.0e-116 424.5 452 54.2
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 1.8e-116 423.7 455 51.9
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 2.6e-115 419.9 474 54.2
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 7.5e-115 418.3 455 51.6
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 9.8e-115 417.9 474 53.0
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 1.3e-114 417.5 390 57.7
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.7e-114 417.2 420 59.8
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.4e-113 413.3 418 56.9
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.1e-113 412.5 478 52.3
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 9.1e-113 411.4 474 52.3
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 2.7e-112 409.8 460 55.4
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 1.0e-111 407.9 455 54.3
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 1.0e-111 407.9 452 51.1
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.0e-111 405.6 404 56.7
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 5.0e-111 405.6 454 52.0
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 4.2e-110 402.5 400 58.2
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 2.1e-109 400.2 457 51.0
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 4.0e-108 396.0 327 63.3
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 4.0e-108 396.0 458 50.7
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 2.8e-106 389.8 470 53.8
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 8.3e-106 388.3 479 54.3
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 8.3e-106 388.3 454 55.7
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.3e-106 388.3 465 57.2
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 9.2e-105 384.8 466 53.9
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 1.3e-103 380.9 412 52.9
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 1.7e-103 380.6 461 48.4
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 2.3e-103 380.2 413 54.7
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.6e-102 375.6 351 59.0
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 5.6e-102 375.6 403 53.6
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 5.6e-102 375.6 469 53.9
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 5.6e-102 375.6 469 53.9
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.8e-101 373.2 472 54.9
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 1.6e-96 357.5 478 46.9
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.6e-96 357.5 456 54.2
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 6.0e-96 355.5 480 46.7
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 1.3e-95 354.4 478 49.0
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.1e-94 351.3 468 49.1
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.9e-94 350.5 450 54.2
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 7.3e-94 348.6 325 58.2
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 1.6e-93 347.4 478 49.4
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 1.6e-93 347.4 478 49.4
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 2.1e-93 347.1 473 46.3
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 6.2e-93 345.5 349 59.6
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 1.4e-92 344.4 283 61.1
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 2.3e-92 343.6 325 58.2
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 5.2e-92 342.4 485 45.8
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.4e-91 339.3 464 51.5
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 1.3e-90 337.8 401 49.9
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 8.3e-90 335.1 491 46.0
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 1.1e-89 334.7 400 50.0
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.2e-89 333.2 285 67.7
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.6e-88 330.9 471 50.3
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 2.1e-88 330.5 405 50.9
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.8e-88 328.6 460 49.1
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 6.6e-87 325.5 461 45.1
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 1.1e-86 324.7 485 44.9
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 2.5e-86 323.6 483 44.1
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 2.1e-85 320.5 450 49.6
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 1.8e-84 317.4 461 43.2
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 1.2e-83 314.7 459 44.7
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 1.5e-83 314.3 319 58.3
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 3.4e-83 313.2 480 41.2
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 4.4e-83 312.8 279 64.2
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 1.2e-80 304.7 485 42.1
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 4.7e-77 292.7 486 41.2
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 8.9e-76 288.5 231 61.5
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.5e-75 287.7 326 51.2
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 2.5e-70 270.4 266 61.3
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.3e-70 269.6 293 52.2
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 6.2e-69 265.8 175 73.1
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 7.8e-64 248.8 388 42.8
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 1.1e-62 245.0 179 65.9
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 2.4e-60 237.3 256 53.5
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 5.3e-60 236.1 289 50.2
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 1.8e-55 221.1 455 36.0
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.4e-52 210.7 251 48.2
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 1.3e-45 188.3 402 36.3
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.4e-44 184.1 174 57.5
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 2.2e-42 177.6 155 74.8
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.2e-41 173.3 156 59.6
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 6.3e-37 159.5 103 72.8
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.1e-36 157.1 158 53.2
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 4.1e-36 156.8 311 39.5
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.5e-35 154.8 153 56.2
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 5.9e-35 152.9 197 52.3
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 9.4e-33 145.6 230 38.7
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 3.0e-31 140.6 86 82.6
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 5.1e-31 139.8 126 55.6
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 2.5e-30 137.5 104 66.3
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 5.7e-30 136.3 261 39.8
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.7e-29 133.7 144 52.8
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 3.2e-25 120.6 71 84.5
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 2.2e-21 107.8 139 39.6
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 9.1e-20 102.4 80 62.5
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.2e-17 93.6 74 60.8
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.2e-17 93.6 122 45.9
TAR314G0006 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.6e-08 63.9 99 40.4
CAN.G48.42 Capsicum annuum HOM05D002503 ORTHO05D002810 6.8e-07 59.7 400 25.0
VMungo0647G0746 Vigna mungo HOM05D002125 ORTHO05D002105 1.2e-06 58.9 153 30.7
Eucgr.J01853 Eucalyptus grandis HOM05D002125 ORTHO05D002105 2.0e-06 58.2 183 31.1
Glyma.14G200300 Glycine max HOM05D002125 ORTHO05D002105 2.6e-06 57.8 259 27.4
CANSAT54G1695 Cannabis sativa HOM05D002125 ORTHO05D002105 7.5e-06 56.2 225 26.2


User provided reference genes

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