Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032349 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 4.5e-247 857.4 425 100.0
CSS0035836 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 5.6e-221 770.8 424 89.9
CSS0002149 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 9.2e-216 753.4 426 87.6
CSS0025900 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 2.8e-196 688.7 424 82.5
Rhsim05G0160000 Rhododendron simsii HOM05D011344 ORTHO05D016379 2.9e-36 157.1 250 36.8
vmacro09225 Vaccinium macrocarpon HOM05D007651 ORTHO05D000898 1.1e-35 155.2 248 36.7
Rhsim02G0102000 Rhododendron simsii HOM05D002347 ORTHO05D000898 5.5e-35 152.9 208 41.8
Rhsim09G0109800 Rhododendron simsii HOM05D007651 ORTHO05D000898 1.2e-34 151.8 208 41.3
Rhsim04G0115000 Rhododendron simsii HOM05D007651 ORTHO05D000898 2.1e-34 151.0 208 40.9
Rhsim11G0015600 Rhododendron simsii HOM05D011344 ORTHO05D016379 5.1e-33 146.4 314 32.8
Rhsim02G0142200 Rhododendron simsii HOM05D007651 ORTHO05D000898 3.7e-31 140.2 192 41.1
CSS0040705 Camellia sinensis var. sinensis HOM05D024541 ORTHO05D024705 9.1e-30 135.6 74 89.2
Rhsim01G0159600 Rhododendron simsii HOM05D011344 ORTHO05D016379 1.2e-29 135.2 199 39.2
CSS0045207 Camellia sinensis var. sinensis HOM05D024541 ORTHO05D024705 6.5e-28 129.4 74 85.1
Rhsim04G0060600 Rhododendron simsii HOM05D007651 ORTHO05D000898 3.6e-26 123.6 229 35.4
HanXRQChr11g0325241 Helianthus annuus HOM05D007651 ORTHO05D000898 5.3e-22 109.8 276 29.0
HanXRQChr09g0262351 Helianthus annuus HOM05D007651 ORTHO05D000898 2.0e-21 107.8 276 29.0
ECA238G0783 Erigeron canadensis HOM05D007651 ORTHO05D000898 4.5e-21 106.7 276 27.9
Rhsim05G0139900 Rhododendron simsii HOM05D007651 ORTHO05D000898 5.9e-21 106.3 169 34.9
Lsat_1_v5_gn_2_81300 Lactuca sativa HOM05D007651 ORTHO05D000898 7.7e-21 105.9 307 28.3
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 1.3e-20 105.1 277 27.4
Rhsim02G0161600 Rhododendron simsii HOM05D011344 ORTHO05D016379 2.9e-20 104.0 222 29.3
Lsat_1_v5_gn_4_155061 Lactuca sativa HOM05D007651 ORTHO05D000898 8.5e-20 102.4 276 27.2
Rhsim02G0127200 Rhododendron simsii HOM05D011344 ORTHO05D016379 1.1e-19 102.1 208 32.7
Hma1.2p1_0381F.1_g139960 Hydrangea macrophylla HOM05D000011 ORTHO05D000018 5.5e-19 99.8 280 26.1
Nitab4.5_0000901g0120 Nicotiana tabacum HOM05D007651 ORTHO05D001192 7.2e-19 99.4 302 23.5
RhsimUnG0074900 Rhododendron simsii HOM05D011344 ORTHO05D016379 1.2e-18 98.6 249 30.1
Nn3g19299 Nelumbo nucifera HOM05D007651 ORTHO05D000898 1.6e-18 98.2 294 26.2
Sopen03g007480 Solanum pennellii HOM05D007651 ORTHO05D000898 2.1e-18 97.8 303 24.1
CSS0020998 Camellia sinensis var. sinensis HOM05D007651 ORTHO05D000898 2.7e-18 97.4 276 27.2
PGSC0003DMG400016690 Solanum tuberosum HOM05D007651 ORTHO05D000898 2.7e-18 97.4 302 24.5
Solyc03g043600.3 Solanum lycopersicum HOM05D007651 ORTHO05D000898 3.6e-18 97.1 303 23.8
Hma1.2p1_1820F.1_g304200 Hydrangea macrophylla HOM05D007651 ORTHO05D001192 4.7e-18 96.7 274 25.2
MSTRG.3530 Avicennia marina HOM05D007651 ORTHO05D001192 1.4e-17 95.1 276 25.7
Cpa.g.sc116.14 Carica papaya HOM05D007651 ORTHO05D001192 1.4e-17 95.1 277 26.0
Migut.L00474 Erythranthe guttata HOM05D007651 ORTHO05D001192 1.4e-17 95.1 278 25.9
Peaxi162Scf00104g01921 Petunia axillaris HOM05D007651 ORTHO05D000898 1.8e-17 94.7 302 24.5
Actinidia17653 Actinidia chinensis HOM05D007651 ORTHO05D000898 3.0e-17 94.0 276 25.4
CAN.G11.14 Capsicum annuum HOM05D007651 ORTHO05D001192 3.0e-17 94.0 276 25.4
Dinv19003 Davidia involucrata HOM05D007651 ORTHO05D000898 3.0e-17 94.0 302 24.8
SGA_v2.0_scaffold174G39280 Striga asiatica HOM05D007651 ORTHO05D000898 3.0e-17 94.0 278 25.2
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 3.9e-17 93.6 277 26.4
Gohir.D06G186000 Gossypium hirsutum HOM05D007651 ORTHO05D000898 3.9e-17 93.6 276 26.8
GSVIVG01030888001 Vitis vinifera HOM05D007651 ORTHO05D001192 3.9e-17 93.6 276 25.7
Gorai.010G218300 Gossypium raimondii HOM05D007651 ORTHO05D000898 6.7e-17 92.8 276 26.8
Thecc.10G176700 Theobroma cacao HOM05D007651 ORTHO05D001192 6.7e-17 92.8 310 24.2
Glyma.10G201800 Glycine max HOM05D007651 ORTHO05D000898 1.5e-16 91.7 276 26.1
Potri.004G091800 Populus trichocarpa HOM05D007651 ORTHO05D000898 2.0e-16 91.3 276 26.1
Nitab4.5_0000625g0020 Nicotiana tabacum HOM05D007651 ORTHO05D001192 2.6e-16 90.9 263 24.0
MD09G1260400 Malus domestica HOM05D007651 ORTHO05D001192 3.3e-16 90.5 276 25.7
QL02p048445 Quercus lobata HOM05D007651 ORTHO05D001192 3.3e-16 90.5 276 25.7
CANSAT01G2817 Cannabis sativa HOM05D007651 ORTHO05D001192 4.4e-16 90.1 277 25.3
Ciclev10011294m.g Citrus clementina HOM05D007651 ORTHO05D001192 4.4e-16 90.1 277 26.4
CiPaw.04G045400 Carya illinoinensis HOM05D007651 ORTHO05D001192 7.4e-16 89.4 276 26.1
Gohir.A06G176700 Gossypium hirsutum HOM05D007651 ORTHO05D000898 7.4e-16 89.4 276 26.1
Manes.03G097100 Manihot esculenta HOM05D007651 ORTHO05D001192 7.4e-16 89.4 276 26.1
Rhsim01G0153500 Rhododendron simsii HOM05D011344 ORTHO05D016379 9.7e-16 89.0 209 32.5
FAN18G0847 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.3e-15 88.6 240 28.8
Duzib106G0239 Durio zibethinus HOM05D007651 ORTHO05D000898 2.2e-15 87.8 277 24.9
Prupe.3G152100 Prunus persica HOM05D007651 ORTHO05D001192 2.2e-15 87.8 277 26.4
Atru.chr10.1446 Acer truncatum HOM05D004096 ORTHO05D000898 3.7e-15 87.0 242 24.8
COL.COLO4_10042 Corchorus olitorius HOM05D007651 ORTHO05D000898 3.7e-15 87.0 292 24.3
FvH4_7g31230 Fragaria vesca HOM05D000045 ORTHO05D000067 1.1e-14 85.5 262 25.6
FAN12G1875 Fragaria x ananassa HOM05D004096 ORTHO05D000898 3.1e-14 84.0 250 27.2
FAN13G0792 Fragaria x ananassa HOM05D017852 ORTHO05D000898 1.2e-13 82.0 256 26.2
CiPaw.15G020600 Carya illinoinensis HOM05D007651 ORTHO05D001192 2.6e-13 80.9 274 25.2
Dinv01422 Davidia involucrata HOM05D008396 ORTHO05D000898 2.6e-13 80.9 247 24.7
FvH4_4g05321 Fragaria vesca HOM05D004096 ORTHO05D000898 2.6e-13 80.9 193 27.5
RcHm_v2.0_Chr6g0266671 Rosa chinensis HOM05D004096 ORTHO05D000898 3.5e-13 80.5 198 26.3
FAN27G1870 Fragaria x ananassa HOM05D004096 ORTHO05D000898 4.5e-13 80.1 201 24.9
Atru.chr5.2180 Acer truncatum HOM05D004096 ORTHO05D000898 5.9e-13 79.7 365 21.9
FAN20G1880 Fragaria x ananassa HOM05D004096 ORTHO05D000898 5.9e-13 79.7 201 24.9
Potri.010G214500 Populus trichocarpa HOM05D007651 ORTHO05D000898 7.7e-13 79.3 284 26.1
Sabra10G0165800 Salix brachista HOM05D007651 ORTHO05D000898 7.7e-13 79.3 302 25.5
COL.COLO4_20373 Corchorus olitorius HOM05D007993 ORTHO05D000898 1.0e-12 79.0 250 24.0
Rhsim06G0015800 Rhododendron simsii HOM05D066245 ORTHO05D024735 1.3e-12 78.6 163 35.0
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 2.2e-12 77.8 305 23.0
Atru.chr1.1775 Acer truncatum HOM05D007651 ORTHO05D001192 5.0e-12 76.6 197 28.4
FvH4_2g09911 Fragaria vesca HOM05D004096 ORTHO05D000898 5.0e-12 76.6 236 24.6
FAN24G1944 Fragaria x ananassa HOM05D004096 ORTHO05D000898 5.0e-12 76.6 236 24.6
Atru.chr13.1926 Acer truncatum HOM05D007651 ORTHO05D000898 8.5e-12 75.9 295 25.4
THA.LOC104805598 Tarenaya hassleriana HOM05D007651 ORTHO05D000898 1.9e-11 74.7 232 24.1
Dinv33528 Davidia involucrata HOM05D007544 ORTHO05D009682 2.5e-11 74.3 244 26.6
Rhsim01G0228300 Rhododendron simsii HOM05D000537 ORTHO05D000415 3.2e-11 73.9 333 23.7
CSS0025909 Camellia sinensis var. sinensis HOM05D066949 ORTHO05D043282 7.2e-11 72.8 65 49.2
Dinv09698 Davidia involucrata HOM05D007544 ORTHO05D009682 7.2e-11 72.8 247 25.5
Prupe.7G070100 Prunus persica HOM05D004096 ORTHO05D000898 2.7e-10 70.9 221 23.5
QL03p022565 Quercus lobata HOM05D007651 ORTHO05D000898 2.7e-10 70.9 149 30.2
RcHm_v2.0_Chr6g0266661 Rosa chinensis HOM05D007993 ORTHO05D000898 2.7e-10 70.9 257 21.8
Dinv13142 Davidia involucrata HOM05D008396 ORTHO05D000898 3.6e-10 70.5 92 31.5
Atru.chr11.572 Acer truncatum HOM05D007651 ORTHO05D000898 4.7e-10 70.1 219 22.8
Cc02_g32350 Coffea canephora HOM05D002461 ORTHO05D000898 8.0e-10 69.3 253 22.5
Dinv14442 Davidia involucrata HOM05D008396 ORTHO05D000898 8.0e-10 69.3 76 38.2
AUR62025076 Chenopodium quinoa HOM05D008127 ORTHO05D010494 1.0e-09 68.9 316 22.5
Hma1.2p1_0941F.1_g239730 Hydrangea macrophylla HOM05D000199 ORTHO05D000550 1.0e-09 68.9 94 37.2
AUR62030064 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.8e-09 65.9 168 26.2
Dinv28085 Davidia involucrata HOM05D007544 ORTHO05D009682 1.2e-08 65.5 212 24.5
AUR62039695 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.5e-08 65.1 167 26.9
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.0e-08 64.7 178 25.3
Dinv15468 Davidia involucrata HOM05D008396 ORTHO05D000898 3.4e-08 63.9 217 24.4
FAN21G3088 Fragaria x ananassa HOM05D004096 ORTHO05D000898 4.4e-08 63.5 187 26.7
RcHm_v2.0_Chr2g0155601 Rosa chinensis HOM05D004096 ORTHO05D000898 5.7e-08 63.2 185 27.0
AUR62042188 Chenopodium quinoa HOM05D002461 ORTHO05D000898 7.5e-08 62.8 151 26.5
Dinv02312 Davidia involucrata HOM05D007544 ORTHO05D009682 9.7e-08 62.4 91 35.2
FAN03G1695 Fragaria x ananassa HOM05D008674 ORTHO05D000898 9.7e-08 62.4 245 22.9
Dinv07106 Davidia involucrata HOM05D008396 ORTHO05D000898 1.3e-07 62.0 213 23.5
FAN27G2446 Fragaria x ananassa HOM05D008674 ORTHO05D000898 1.7e-07 61.6 245 22.9
Os02g0467500 Oryza sativa ssp. japonica HOM05D007651 ORTHO05D010881 2.2e-07 61.2 79 31.6
Dinv00626 Davidia involucrata HOM05D007544 ORTHO05D009682 2.8e-07 60.8 91 36.3
FAN21G3110 Fragaria x ananassa HOM05D008674 ORTHO05D000898 2.8e-07 60.8 245 22.9
GSVIVG01014620001 Vitis vinifera HOM05D007651 ORTHO05D013864 4.8e-07 60.1 188 20.7
FAN06G1622 Fragaria x ananassa HOM05D007993 ORTHO05D000898 6.3e-07 59.7 103 33.0
Prupe.7G017400 Prunus persica HOM05D004096 ORTHO05D000898 6.3e-07 59.7 265 20.8
FvH4_5g30680 Fragaria vesca HOM05D007993 ORTHO05D000898 8.3e-07 59.3 234 21.8
FAN08G3199 Fragaria x ananassa HOM05D008674 ORTHO05D000898 8.3e-07 59.3 248 23.4
FAN28G2991 Fragaria x ananassa HOM05D008674 ORTHO05D000898 8.3e-07 59.3 245 22.9
Rhsim08G0168100 Rhododendron simsii HOM05D007651 ORTHO05D002997 8.3e-07 59.3 114 32.5
AUR62013878 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.1e-06 58.9 206 22.3
COL.COLO4_35220 Corchorus olitorius HOM05D019362 ORTHO05D013856 1.1e-06 58.9 100 29.0
Dinv12671 Davidia involucrata HOM05D008396 ORTHO05D000898 1.1e-06 58.9 217 23.0
RcHm_v2.0_Chr1g0347831 Rosa chinensis HOM05D004096 ORTHO05D000898 1.1e-06 58.9 116 29.3
AUR62000408 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.4e-06 58.5 201 22.9
RcHm_v2.0_Chr4g0423011 Rosa chinensis HOM05D004096 ORTHO05D000898 1.4e-06 58.5 220 21.4
FAN17G1842 Fragaria x ananassa HOM05D008674 ORTHO05D000898 1.8e-06 58.2 247 22.3
AUR62025842 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.1e-06 57.4 155 25.8
FAN06G0315 Fragaria x ananassa HOM05D007993 ORTHO05D000898 3.1e-06 57.4 103 31.1
FAN09G4582 Fragaria x ananassa HOM05D007993 ORTHO05D000898 3.1e-06 57.4 278 21.2
FAN15G0550 Fragaria x ananassa HOM05D004096 ORTHO05D000898 3.1e-06 57.4 82 32.9
AUR62032142 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.1e-06 57.0 154 21.4
DCAR_031666 Daucus carota HOM05D033671 ORTHO05D035014 4.1e-06 57.0 75 32.0
FAN12G1044 Fragaria x ananassa HOM05D007993 ORTHO05D000898 4.1e-06 57.0 240 22.1
arahy.Tifrunner.gnm1.ann1.50SKUH Arachis hypogaea HOM05D010233 ORTHO05D010881 5.3e-06 56.6 74 32.4
AUR62003732 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-06 56.6 97 29.9
AUR62007003 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-06 56.6 97 29.9
AUR62008234 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-06 56.6 97 29.9
AUR62015686 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-06 56.6 97 29.9
AUR62027923 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-06 56.6 97 29.9
FAN05G4611 Fragaria x ananassa HOM05D000980 ORTHO05D000649 5.3e-06 56.6 135 23.0
COL.COLO4_33138 Corchorus olitorius HOM05D019362 ORTHO05D013856 7.0e-06 56.2 98 28.6
FAN06G1954 Fragaria x ananassa HOM05D004096 ORTHO05D000898 9.1e-06 55.8 202 26.2


User provided reference genes

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