Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032008 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 4.6e-25 117.1 58 100.0
CSS0047138 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 1.1e-18 95.9 53 92.5
Psat4g197520 Pisum sativum HOM05D005373 ORTHO05D006617 3.2e-18 94.4 53 88.7
Actinidia24948 Actinidia chinensis HOM05D005373 ORTHO05D006617 7.0e-18 93.2 53 86.8
CSS0009352 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 7.0e-18 93.2 53 90.6
CARHR157930 Cardamine hirsuta HOM05D005373 ORTHO05D006617 7.0e-18 93.2 53 86.8
Sed0003924 Sechium edule HOM05D005373 ORTHO05D006617 7.0e-18 93.2 53 86.8
SGA_v2.0_scaffold138G35268 Striga asiatica HOM05D005373 ORTHO05D006617 9.2e-18 92.8 53 86.8
Thecc.01G266100 Theobroma cacao HOM05D005373 ORTHO05D006617 9.2e-18 92.8 53 84.9
TPR.G2468 Trifolium pratense HOM05D005373 ORTHO05D006617 9.2e-18 92.8 53 86.8
CSS0017854 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 1.6e-17 92.0 53 84.9
Lalb_Chr03g0041301 Lupinus albus HOM05D005373 ORTHO05D006617 1.6e-17 92.0 53 83.0
AL5G28610 Arabidopsis lyrata HOM05D005373 ORTHO05D006617 2.0e-17 91.7 53 84.9
AT3G49100 Arabidopsis thaliana HOM05D005373 ORTHO05D006617 2.0e-17 91.7 53 84.9
arahy.Tifrunner.gnm1.ann1.W8F73Z Arachis hypogaea HOM05D005373 ORTHO05D006617 2.0e-17 91.7 53 84.9
arahy.Tifrunner.gnm1.ann1.ZBI3RA Arachis hypogaea HOM05D005373 ORTHO05D006617 2.0e-17 91.7 53 84.9
Carub.0005s1529 Capsella rubella HOM05D005373 ORTHO05D006617 2.0e-17 91.7 53 84.9
Thhalv10010849m.g Eutrema salsugineum HOM05D005373 ORTHO05D006617 2.0e-17 91.7 53 84.9
Rhsim01G0268500 Rhododendron simsii HOM05D005373 ORTHO05D006617 2.0e-17 91.7 53 84.9
Sp5g12980 Schrenkiella parvula HOM05D005373 ORTHO05D006617 2.0e-17 91.7 53 84.9
MSTRG.18297 Avicennia marina HOM05D005373 ORTHO05D006617 3.5e-17 90.9 53 84.9
Haze_24544 Corylus avellana HOM05D005373 ORTHO05D006617 3.5e-17 90.9 53 84.9
MELO3C014306.2 Cucumis melo HOM05D005373 ORTHO05D006617 3.5e-17 90.9 53 83.0
CsaV3_2G013670 Cucumis sativus L. HOM05D005373 ORTHO05D006617 3.5e-17 90.9 53 83.0
Duzib211G0177 Durio zibethinus HOM05D005373 ORTHO05D006617 3.5e-17 90.9 53 83.0
FvH4_2g22310 Fragaria vesca HOM05D005373 ORTHO05D006617 3.5e-17 90.9 53 84.9
FAN15G3255 Fragaria x ananassa HOM05D005373 ORTHO05D006617 3.5e-17 90.9 53 84.9
FAN20G0018 Fragaria x ananassa HOM05D005373 ORTHO05D006617 3.5e-17 90.9 53 84.9
FAN24G2777 Fragaria x ananassa HOM05D005373 ORTHO05D006617 3.5e-17 90.9 53 84.9
Glyma.08G346000 Glycine max HOM05D005373 ORTHO05D006617 3.5e-17 90.9 53 83.0
Glyma.18G156300 Glycine max HOM05D005373 ORTHO05D006617 3.5e-17 90.9 53 83.0
Gohir.A08G188600 Gossypium hirsutum HOM05D005373 ORTHO05D006617 3.5e-17 90.9 53 83.0
Gohir.D08G207000 Gossypium hirsutum HOM05D005373 ORTHO05D006617 3.5e-17 90.9 53 83.0
Gorai.004G219200 Gossypium raimondii HOM05D005373 ORTHO05D006617 3.5e-17 90.9 53 83.0
RcHm_v2.0_Chr6g0289311 Rosa chinensis HOM05D005373 ORTHO05D006617 3.5e-17 90.9 53 84.9
TPR.G35732 Trifolium pratense HOM05D005373 ORTHO05D006617 3.5e-17 90.9 53 84.9
Actinidia21168 Actinidia chinensis HOM05D005373 ORTHO05D006617 4.6e-17 90.5 53 83.0
Ah.05g177620 Amaranthus hybridus HOM05D005373 ORTHO05D006617 4.6e-17 90.5 53 83.0
Gohir.A12G149900 Gossypium hirsutum HOM05D005373 ORTHO05D006617 4.6e-17 90.5 53 83.0
Medtr1g070460 Medicago truncatula HOM05D005373 ORTHO05D006617 4.6e-17 90.5 53 84.9
Ciclev10023009m.g Citrus clementina HOM05D005373 ORTHO05D006617 6.0e-17 90.1 53 83.0
COL.COLO4_08280 Corchorus olitorius HOM05D005373 ORTHO05D006617 6.0e-17 90.1 53 83.0
COL.COLO4_29457 Corchorus olitorius HOM05D005373 ORTHO05D006617 6.0e-17 90.1 53 83.0
Dinv22468 Davidia involucrata HOM05D005373 ORTHO05D006617 6.0e-17 90.1 53 84.9
GSVIVG01000751001 Vitis vinifera HOM05D005373 ORTHO05D006617 6.0e-17 90.1 53 84.9
EL10Ac1g00710 Beta vulgaris HOM05D005373 ORTHO05D006617 7.8e-17 89.7 53 83.0
Cfa002338 Carpinus fangiana HOM05D005373 ORTHO05D006617 7.8e-17 89.7 53 83.0
AUR62013793 Chenopodium quinoa HOM05D005373 ORTHO05D006617 7.8e-17 89.7 53 83.0
AUR62023362 Chenopodium quinoa HOM05D005373 ORTHO05D006617 7.8e-17 89.7 53 83.0
ClCG07G000650 Citrullus lanatus HOM05D005373 ORTHO05D006617 7.8e-17 89.7 53 81.1
Migut.D00388 Erythranthe guttata HOM05D005373 ORTHO05D006617 7.8e-17 89.7 53 84.9
Nn3g19526 Nelumbo nucifera HOM05D005373 ORTHO05D006617 7.8e-17 89.7 53 83.0
QL04p081438 Quercus lobata HOM05D005373 ORTHO05D006617 7.8e-17 89.7 52 80.8
QL12p042863 Quercus lobata HOM05D005373 ORTHO05D006617 7.8e-17 89.7 52 80.8
Rhsim12G0063100 Rhododendron simsii HOM05D005373 ORTHO05D006617 7.8e-17 89.7 53 83.0
SGA_v2.0_scaffold1G00570 Striga asiatica HOM05D005373 ORTHO05D006617 7.8e-17 89.7 53 83.0
BcaC07g39386 Brassica carinata HOM05D005373 ORTHO05D006617 1.0e-16 89.4 53 83.0
A06p18650 Brassica napus HOM05D005373 ORTHO05D006617 1.0e-16 89.4 53 83.0
C08p24090 Brassica napus HOM05D005373 ORTHO05D006617 1.0e-16 89.4 53 83.0
BolC8t50030H Brassica oleracea HOM05D005373 ORTHO05D006617 1.0e-16 89.4 53 83.0
BraA06t24943Z Brassica rapa HOM05D005373 ORTHO05D006617 1.0e-16 89.4 53 83.0
CiPaw.02G033000 Carya illinoinensis HOM05D005373 ORTHO05D006617 1.0e-16 89.4 53 81.1
CiPaw.04G182700 Carya illinoinensis HOM05D005373 ORTHO05D006617 1.0e-16 89.4 53 81.1
Phvul.008G134200 Phaseolus vulgaris HOM05D005373 ORTHO05D006617 1.0e-16 89.4 53 81.1
Hund17126 Selenicereus undatus HOM05D005373 ORTHO05D006617 1.0e-16 89.4 53 83.0
Sc02g0003290 Simmondsia chinensis HOM05D005373 ORTHO05D006617 1.0e-16 89.4 53 83.0
Cc01_g18740 Coffea canephora HOM05D005373 ORTHO05D006617 1.3e-16 89.0 53 83.0
THA.LOC104821383 Tarenaya hassleriana HOM05D005373 ORTHO05D006617 1.3e-16 89.0 53 81.1
A06p28050 Brassica napus HOM05D005373 ORTHO05D006617 1.7e-16 88.6 53 81.1
BraA06t25747Z Brassica rapa HOM05D005373 ORTHO05D006617 1.7e-16 88.6 53 81.1
Lj5g0027817 Lotus japonicus HOM05D005373 ORTHO05D006617 1.7e-16 88.6 53 81.1
THA.LOC104818165 Tarenaya hassleriana HOM05D005373 ORTHO05D006617 1.7e-16 88.6 53 83.0
Atru.chr5.1594 Acer truncatum HOM05D005373 ORTHO05D006617 2.3e-16 88.2 53 79.2
BcaB01g00749 Brassica carinata HOM05D005373 ORTHO05D006617 2.3e-16 88.2 53 81.1
BcaB02g09576 Brassica carinata HOM05D005373 ORTHO05D006617 2.3e-16 88.2 53 81.1
Lalb_Chr19g0125981 Lupinus albus HOM05D005373 ORTHO05D006617 2.3e-16 88.2 53 81.1
MD05G1204500 Malus domestica HOM05D005373 ORTHO05D006617 2.3e-16 88.2 53 81.1
MD10G1191500 Malus domestica HOM05D005373 ORTHO05D006617 2.3e-16 88.2 53 81.1
Oeu002282.1 Olea europaea HOM05D001069 ORTHO05D001549 2.3e-16 88.2 53 81.1
TAR365G0879 Trochodendron aralioides HOM05D005373 ORTHO05D006617 2.3e-16 88.2 53 81.1
CANSAT01G0877 Cannabis sativa HOM05D005373 ORTHO05D006617 3.0e-16 87.8 53 81.1
PGR102G1093 Punica granatum HOM05D005373 ORTHO05D006617 3.0e-16 87.8 53 81.1
Atru.chr2.3918 Acer truncatum HOM05D005373 ORTHO05D006617 5.0e-16 87.0 53 79.2
Aa31LG4G17560 Aethionema arabicum HOM05D005373 ORTHO05D006617 5.0e-16 87.0 54 83.3
DCAR_012520 Daucus carota HOM05D005373 ORTHO05D006617 5.0e-16 87.0 53 81.1
Glyma.10G032800 Glycine max HOM05D005373 ORTHO05D006617 5.0e-16 87.0 53 81.1
Aqoxy2G03557 Aquilegia oxysepala HOM05D005373 ORTHO05D006617 6.6e-16 86.7 53 79.2
Manes.01G200900 Manihot esculenta HOM05D005373 ORTHO05D006617 6.6e-16 86.7 53 79.2
Nn1g02594 Nelumbo nucifera HOM05D005373 ORTHO05D006617 6.6e-16 86.7 53 79.2
Prupe.8G230800 Prunus persica HOM05D005373 ORTHO05D006617 6.6e-16 86.7 53 77.4
TAR633G1352 Trochodendron aralioides HOM05D005373 ORTHO05D006617 6.6e-16 86.7 53 79.2
CANSAT11G1068 Cannabis sativa HOM05D005373 ORTHO05D006617 8.6e-16 86.3 53 79.2
PSO832G1599 Papaver somniferum HOM05D005373 ORTHO05D006617 8.6e-16 86.3 53 77.4
BcaC01g02388 Brassica carinata HOM05D005373 ORTHO05D006617 1.5e-15 85.5 53 79.2
BolC3t18839H Brassica oleracea HOM05D005373 ORTHO05D006617 1.5e-15 85.5 53 79.2
SalBow4G0280 Salvia bowleyana HOM05D005373 ORTHO05D006617 1.5e-15 85.5 53 79.2
Cpa.g.sc52.142 Carica papaya HOM05D005373 ORTHO05D006617 1.9e-15 85.1 53 75.5
Glyma.02G141101 Glycine max HOM05D005373 ORTHO05D006617 1.9e-15 85.1 53 81.1
Dinv34577 Davidia involucrata HOM05D005373 ORTHO05D006617 4.3e-15 84.0 53 81.1
Nitab4.5_0002310g0090 Nicotiana tabacum HOM05D005373 ORTHO05D006617 4.3e-15 84.0 53 79.2
Peaxi162Scf00700g00135 Petunia axillaris HOM05D005373 ORTHO05D006617 4.3e-15 84.0 53 79.2
Solyc12g099820.1 Solanum lycopersicum HOM05D005373 ORTHO05D006617 4.3e-15 84.0 53 79.2
Sopen12g034450 Solanum pennellii HOM05D005373 ORTHO05D006617 4.3e-15 84.0 53 79.2
PGSC0003DMG400004717 Solanum tuberosum HOM05D005373 ORTHO05D006617 4.3e-15 84.0 53 79.2
Gohir.D11G133500 Gossypium hirsutum HOM05D005373 ORTHO05D006617 5.6e-15 83.6 53 79.2
Gorai.007G142700 Gossypium raimondii HOM05D005373 ORTHO05D006617 5.6e-15 83.6 53 79.2
Potri.002G043600 Populus trichocarpa HOM05D005373 ORTHO05D006617 5.6e-15 83.6 53 77.4
vmacro11045 Vaccinium macrocarpon HOM05D005373 ORTHO05D006617 5.6e-15 83.6 53 79.2
C03p65820 Brassica napus HOM05D005373 ORTHO05D006617 7.3e-15 83.2 53 77.4
unitig_26.g10142 Utricularia gibba HOM05D005373 ORTHO05D006617 9.5e-15 82.8 53 77.4
ATR0665G560 Amborella trichopoda HOM05D005373 ORTHO05D006617 1.2e-14 82.4 53 75.5
Duzib138G0987 Durio zibethinus HOM05D005373 ORTHO05D006617 1.2e-14 82.4 54 79.6
CAN.G575.93 Capsicum annuum HOM05D005373 ORTHO05D006617 1.6e-14 82.0 53 79.2
HanXRQChr01g0005311 Helianthus annuus HOM05D005373 ORTHO05D006617 1.6e-14 82.0 53 79.2
HanXRQChr06g0164391 Helianthus annuus HOM05D005373 ORTHO05D006617 1.6e-14 82.0 53 79.2
MBI04_g39243_MAGBIO Magnolia biondii HOM05D005373 ORTHO05D006617 2.1e-14 81.6 53 71.7
TWI18G0681 Tripterygium wilfordii HOM05D005373 ORTHO05D006617 2.1e-14 81.6 53 75.5
ECA248G2609 Erigeron canadensis HOM05D005373 ORTHO05D006617 2.8e-14 81.3 53 79.2
Eucgr.B01502 Eucalyptus grandis HOM05D005373 ORTHO05D006617 3.6e-14 80.9 53 73.6
Lsat_1_v5_gn_5_186641 Lactuca sativa HOM05D005373 ORTHO05D006617 3.6e-14 80.9 53 79.2
TWI36G0734 Tripterygium wilfordii HOM05D000030 ORTHO05D000009 3.6e-14 80.9 53 75.5
Migut.N02186 Erythranthe guttata HOM05D005373 ORTHO05D006617 4.7e-14 80.5 53 75.5
MSTRG.21508 Avicennia marina HOM05D005373 ORTHO05D006617 8.1e-14 79.7 53 75.5
Gohir.A11G127860 Gossypium hirsutum HOM05D005373 ORTHO05D006617 8.1e-14 79.7 53 77.4
Potri.005G219400 Populus trichocarpa HOM05D005373 ORTHO05D006617 8.1e-14 79.7 53 71.7
HPP92_008005 Vanilla planifolia HOM05D005373 ORTHO05D006617 8.1e-14 79.7 53 71.7
Zm00001eb281280 Zea mays HOM05D005373 ORTHO05D006617 1.4e-13 79.0 52 73.1
PSO063G5966 Papaver somniferum HOM05D005373 ORTHO05D006617 1.8e-13 78.6 53 75.5
Gohir.A10G156200 Gossypium hirsutum HOM05D005373 ORTHO05D006617 5.2e-13 77.0 51 78.4
Sabra02G0035300 Salix brachista HOM05D005373 ORTHO05D006617 6.8e-13 76.6 64 64.1
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 1.5e-12 75.5 53 75.5
Sed0007692 Sechium edule HOM05D005373 ORTHO05D006617 2.0e-12 75.1 47 76.6
CDE06G2230 Ceratophyllum demersum HOM05D005373 ORTHO05D006617 2.6e-12 74.7 53 71.7
Zm00001eb379840 Zea mays HOM05D005373 ORTHO05D006617 2.2e-11 71.6 53 67.9
AagrBONN_evm.TU.Sc2ySwM_344.4653 Anthoceros agrestis HOM05D005373 ORTHO05D006617 8.3e-11 69.7 53 62.3
Mapoly0042s0050 Marchantia polymorpha HOM05D005373 ORTHO05D006617 1.3e-08 62.4 53 58.5
Pp3c14_7880 Physcomitrium patens HOM05D005373 ORTHO05D006617 2.3e-08 61.6 53 54.7
Pp3c2_1790 Physcomitrium patens HOM05D005373 ORTHO05D006617 2.5e-07 58.2 53 52.8


User provided reference genes

Program Settings