Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.1e-63 246.5 125 100.0
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.1e-63 246.5 125 100.0
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 6.7e-58 227.3 125 88.8
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 1.5e-57 226.1 125 88.8
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.8e-55 219.2 125 85.6
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 4.1e-55 218.0 125 85.6
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 5.3e-55 217.6 125 84.8
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 7.0e-55 217.2 125 84.8
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 1.6e-54 216.1 125 85.6
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 2.6e-54 215.3 123 85.4
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 3.5e-54 214.9 122 86.9
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 1.0e-53 213.4 125 82.4
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 1.0e-53 213.4 125 82.4
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 1.7e-53 212.6 125 84.0
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 2.9e-53 211.8 125 81.6
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 5.0e-53 211.1 122 85.2
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 6.5e-53 210.7 122 83.6
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 1.5e-52 209.5 122 82.0
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 1.9e-52 209.1 121 85.1
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 1.9e-52 209.1 122 82.8
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 2.5e-52 208.8 125 80.8
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 2.5e-52 208.8 122 81.1
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 3.2e-52 208.4 125 80.0
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 4.2e-52 208.0 122 82.0
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 4.2e-52 208.0 122 82.0
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 5.5e-52 207.6 122 82.0
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 1.2e-51 206.5 125 79.2
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 1.2e-51 206.5 122 82.0
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 1.6e-51 206.1 120 84.2
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 1.6e-51 206.1 120 84.2
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 2.1e-51 205.7 124 87.1
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 2.1e-51 205.7 120 80.8
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 2.7e-51 205.3 125 81.6
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 3.6e-51 204.9 122 81.1
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 4.7e-51 204.5 125 82.4
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 4.7e-51 204.5 125 82.4
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 6.1e-51 204.1 124 80.6
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 8.0e-51 203.8 121 83.5
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 1.0e-50 203.4 120 82.5
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 1.0e-50 203.4 120 82.5
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 1.0e-50 203.4 122 83.6
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 1.0e-50 203.4 125 80.8
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.8e-50 202.6 125 80.0
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 1.8e-50 202.6 119 82.4
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 2.3e-50 202.2 125 80.0
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 3.0e-50 201.8 125 80.0
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 5.2e-50 201.1 125 78.4
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 6.7e-50 200.7 122 80.3
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 8.8e-50 200.3 124 79.0
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 1.2e-49 199.9 126 80.2
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 2.0e-49 199.1 124 78.2
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 2.0e-49 199.1 124 78.2
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.0e-49 199.1 122 80.3
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 2.6e-49 198.7 125 77.6
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 4.4e-49 198.0 124 79.8
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 5.7e-49 197.6 121 78.5
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 5.7e-49 197.6 125 79.2
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 7.5e-49 197.2 125 77.6
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 9.7e-49 196.8 122 79.5
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 9.7e-49 196.8 125 79.2
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 9.7e-49 196.8 122 77.9
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 9.7e-49 196.8 125 78.4
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 1.7e-48 196.1 122 80.3
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 1.7e-48 196.1 122 77.0
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 1.7e-48 196.1 125 76.8
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 2.2e-48 195.7 122 77.9
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 2.8e-48 195.3 122 77.9
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 2.8e-48 195.3 125 76.8
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 3.7e-48 194.9 120 79.2
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 4.8e-48 194.5 122 79.5
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 1.1e-47 193.4 122 79.5
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.8e-47 192.6 122 76.2
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 2.4e-47 192.2 125 77.6
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 3.1e-47 191.8 122 79.5
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 4.1e-47 191.4 121 77.7
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 4.1e-47 191.4 121 77.7
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 4.1e-47 191.4 122 79.5
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 5.3e-47 191.0 122 75.4
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 5.3e-47 191.0 125 75.2
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 7.0e-47 190.7 121 76.9
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 7.0e-47 190.7 127 74.0
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 9.1e-47 190.3 155 63.9
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 9.1e-47 190.3 122 74.6
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 9.1e-47 190.3 122 76.2
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 1.2e-46 189.9 125 77.6
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 1.2e-46 189.9 122 73.8
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 1.6e-46 189.5 122 73.8
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 1.6e-46 189.5 122 73.8
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 1.6e-46 189.5 122 73.8
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 1.6e-46 189.5 122 73.8
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 1.6e-46 189.5 122 73.8
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 1.6e-46 189.5 110 82.7
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.7e-46 188.7 109 83.5
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 2.7e-46 188.7 122 73.8
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 3.5e-46 188.3 122 73.0
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 4.5e-46 188.0 122 73.0
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 1.3e-45 186.4 122 73.8
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 2.9e-45 185.3 122 73.8
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 2.9e-45 185.3 125 72.0
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 2.9e-45 185.3 122 73.8
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 3.8e-45 184.9 124 71.0
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 5.0e-45 184.5 122 72.1
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 1.1e-44 183.3 121 71.9
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 1.6e-43 179.5 123 69.9
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 8.0e-43 177.2 121 71.9
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 1.4e-42 176.4 130 66.9
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 2.3e-42 175.6 125 71.2
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 1.2e-41 173.3 124 71.8
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 2.6e-41 172.2 122 72.1
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 2.6e-41 172.2 125 69.6
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 5.7e-41 171.0 125 69.6
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 7.5e-41 170.6 122 67.2
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 9.8e-41 170.2 125 68.0
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 1.3e-40 169.9 124 66.9
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 2.8e-40 168.7 122 66.4
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 2.8e-40 168.7 122 67.2
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 1.4e-39 166.4 122 70.5
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 1.4e-39 166.4 122 70.5
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 2.7e-38 162.2 125 63.2
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 5.0e-37 157.9 105 74.3
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 1.1e-36 156.8 120 63.3
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 9.5e-36 153.7 120 61.7
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 2.8e-35 152.1 97 75.3
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 2.8e-35 152.1 124 66.9
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 3.6e-35 151.8 108 70.4
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 1.5e-33 146.4 122 59.0
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 6.3e-32 141.0 122 62.3
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 1.1e-31 140.2 110 62.7
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 3.5e-30 135.2 121 55.4
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 7.8e-30 134.0 83 77.1
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 5.6e-28 127.9 89 68.5
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 8.0e-27 124.0 115 60.0
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 1.4e-26 123.2 83 74.7
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 4.0e-26 121.7 120 50.0
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 2.0e-25 119.4 122 54.9
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.3e-24 116.7 125 52.8
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 6.4e-24 114.4 62 87.1
Os01g0357200 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 1.4e-23 113.2 87 66.7
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 1.2e-22 110.2 60 85.0
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 2.0e-22 109.4 82 68.3
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.7e-21 106.3 94 59.6
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 5.0e-21 104.8 100 55.0
BolC1t02723H Brassica oleracea HOM05D004883 ORTHO05D005766 1.6e-19 99.8 69 68.1
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 4.7e-19 98.2 63 76.2
RcHm_v2.0_Chr5g0032801 Rosa chinensis HOM05D004883 ORTHO05D005766 2.2e-16 89.4 78 64.1
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 2.1e-14 82.8 103 47.6
C09p72490 Brassica napus HOM05D004883 ORTHO05D005766 6.8e-10 67.8 47 68.1
PRCOL_00003255 Prasinoderma coloniale HOM05D004883 ORTHO05D005766 3.2e-07 58.9 91 38.5
MELO3C033382.2 Cucumis melo HOM05D004883 ORTHO05D005766 2.1e-06 56.2 39 66.7
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 3.5e-06 55.5 88 38.6


User provided reference genes

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