Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 1.4e-96 356.3 181 100.0
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 5.5e-85 317.8 180 90.6
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 4.6e-84 314.7 180 90.0
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.8e-83 312.8 180 90.0
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 3.9e-83 311.6 180 90.0
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 8.8e-83 310.5 181 86.7
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.5e-82 309.7 182 87.9
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 6.3e-81 304.3 181 87.8
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.5e-79 299.7 181 85.1
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 7.7e-79 297.4 181 86.2
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 1.0e-78 297.0 181 84.5
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 1.0e-78 297.0 181 86.2
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 3.8e-78 295.0 181 84.0
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 3.8e-78 295.0 181 84.0
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 3.8e-78 295.0 181 85.6
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.1e-77 293.5 181 83.4
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 1.4e-77 293.1 181 83.4
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 1.0e-75 287.0 177 83.1
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 2.3e-75 285.8 182 83.0
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.1e-74 283.5 179 82.7
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.5e-74 283.1 181 80.1
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.5e-74 283.1 181 80.1
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 4.4e-74 281.6 181 81.8
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 4.4e-74 281.6 183 81.4
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 4.4e-74 281.6 183 81.4
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.3e-73 280.0 183 80.3
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 1.3e-73 280.0 181 81.8
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 1.3e-73 280.0 181 80.1
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 1.7e-73 279.6 182 80.2
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.7e-73 279.6 177 82.5
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 2.2e-73 279.3 180 81.1
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 4.8e-73 278.1 181 79.6
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 6.3e-73 277.7 173 80.9
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 6.3e-73 277.7 183 79.8
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 8.2e-73 277.3 181 77.9
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 8.2e-73 277.3 183 80.3
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 8.2e-73 277.3 181 79.6
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 1.1e-72 276.9 173 81.5
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 1.8e-72 276.2 179 79.3
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 3.1e-72 275.4 180 79.4
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.1e-72 275.4 175 80.6
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 4.1e-72 275.0 180 79.4
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 4.1e-72 275.0 180 79.4
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 4.1e-72 275.0 180 80.0
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 5.3e-72 274.6 181 80.1
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 5.3e-72 274.6 173 80.9
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 7.0e-72 274.2 183 82.0
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 7.0e-72 274.2 182 79.1
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 9.1e-72 273.9 173 80.9
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.2e-71 273.5 181 77.9
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 1.2e-71 273.5 175 80.0
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.2e-71 273.5 175 80.0
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 1.5e-71 273.1 178 78.7
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 2.6e-71 272.3 183 76.5
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 3.5e-71 271.9 180 78.3
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 3.5e-71 271.9 180 78.3
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 4.5e-71 271.6 181 78.5
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 7.7e-71 270.8 182 79.1
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 7.7e-71 270.8 175 79.4
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 1.3e-70 270.0 172 80.2
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 2.2e-70 269.2 183 78.1
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.0e-70 268.1 181 75.7
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 6.5e-70 267.7 181 76.8
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 6.5e-70 267.7 173 78.6
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 6.5e-70 267.7 175 77.1
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.1e-69 266.9 181 76.8
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 1.1e-69 266.9 183 77.0
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 1.4e-69 266.5 177 80.2
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.4e-69 266.5 181 80.1
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 2.5e-69 265.8 180 79.4
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 4.2e-69 265.0 183 75.4
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 5.5e-69 264.6 181 74.0
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 9.4e-69 263.8 181 77.3
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 1.2e-68 263.5 182 77.5
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 1.2e-68 263.5 191 73.3
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 2.7e-68 262.3 178 78.1
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 4.7e-68 261.5 181 77.3
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 4.7e-68 261.5 173 79.2
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 8.0e-68 260.8 182 78.6
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 3.0e-67 258.8 175 77.1
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 3.0e-67 258.8 181 76.8
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 5.2e-67 258.1 182 74.7
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 5.2e-67 258.1 182 74.7
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 6.7e-67 257.7 167 78.4
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 8.8e-67 257.3 181 76.2
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 2.6e-66 255.8 175 76.6
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 5.7e-66 254.6 175 77.7
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 2.2e-65 252.7 175 73.1
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 8.2e-65 250.8 175 75.4
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 8.2e-65 250.8 175 75.4
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 8.2e-65 250.8 175 74.9
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 8.2e-65 250.8 174 75.3
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 1.1e-64 250.4 175 74.9
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 1.4e-64 250.0 175 77.7
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 1.8e-64 249.6 176 76.7
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 2.4e-64 249.2 175 74.3
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 9.1e-64 247.3 175 73.1
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 3.5e-63 245.4 189 71.4
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 7.7e-63 244.2 184 71.2
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.3e-62 243.4 183 71.0
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.7e-62 243.0 170 75.3
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 2.2e-62 242.7 183 72.1
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 2.2e-62 242.7 177 71.2
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 5.0e-62 241.5 181 71.3
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 6.5e-62 241.1 178 71.3
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.9e-61 239.6 181 71.3
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 1.9e-61 239.6 177 72.3
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 3.2e-61 238.8 176 73.3
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 4.2e-61 238.4 177 71.2
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 5.5e-61 238.0 183 69.9
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 9.4e-61 237.3 184 69.6
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 1.2e-60 236.9 179 70.9
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 1.2e-60 236.9 150 76.7
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.2e-60 236.9 178 70.2
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.6e-60 235.3 178 69.7
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 1.8e-59 233.0 169 73.4
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 3.0e-59 232.3 183 68.9
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 3.0e-59 232.3 182 68.1
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 6.7e-59 231.1 181 68.0
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 1.2e-58 230.3 193 68.9
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 1.5e-58 229.9 173 69.4
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 1.5e-58 229.9 176 69.9
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 3.3e-58 228.8 179 70.4
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 7.5e-58 227.6 181 66.3
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 1.3e-57 226.9 153 75.8
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 1.7e-57 226.5 158 77.2
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 6.3e-57 224.6 160 75.6
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 4.1e-56 221.9 250 54.0
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 1.7e-54 216.5 174 69.0
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 5.5e-53 211.5 166 68.1
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 3.0e-51 205.7 121 79.3
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 3.0e-51 205.7 176 68.2
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 1.3e-49 200.3 192 63.5
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 1.8e-48 196.4 180 58.9
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 3.1e-48 195.7 143 64.3
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 5.4e-48 194.9 171 58.5
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 7.7e-47 191.0 194 59.8
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 8.6e-46 187.6 171 58.5
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 2.3e-43 179.5 176 54.0
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.7e-38 163.3 89 85.4
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 1.5e-37 160.2 180 50.0
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 2.8e-36 156.0 119 71.4
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.6e-36 155.6 86 84.9
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.8e-35 151.4 86 81.4
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 7.5e-34 147.9 175 49.7
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 6.4e-33 144.8 89 79.8
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 1.9e-32 143.3 135 60.7
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 4.1e-32 142.1 130 61.5
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 9.2e-32 141.0 134 56.7
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.2e-31 140.6 132 61.4
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 8.3e-25 117.9 92 69.6
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 8.3e-25 117.9 92 69.6
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 1.9e-24 116.7 128 50.0
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 5.4e-24 115.2 125 46.4
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 3.6e-20 102.4 105 45.7
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.6e-20 102.4 87 65.5
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 4.7e-20 102.1 87 65.5
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.5e-18 97.1 158 39.2
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.0e-15 85.1 46 82.6
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 5.6e-13 78.6 65 61.5
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 4.7e-12 75.5 80 50.0
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 6.2e-12 75.1 191 35.6
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 8.1e-12 74.7 89 41.6
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.8e-11 73.6 81 58.0
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 5.8e-10 68.6 85 45.9


User provided reference genes

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