Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 6.3e-154 547.4 266 100.0
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 4.7e-117 424.9 267 78.7
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 8.8e-116 420.6 267 77.5
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 7.5e-107 391.0 281 71.9
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 5.4e-105 384.8 267 71.9
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 1.6e-104 383.3 269 70.6
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 1.6e-104 383.3 269 70.6
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 1.7e-98 363.2 267 66.3
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 2.9e-98 362.5 268 69.8
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 1.8e-97 359.8 267 68.5
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 5.4e-97 358.2 257 68.5
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 4.6e-96 355.1 267 66.7
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 4.6e-96 355.1 267 68.2
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 1.0e-95 354.0 267 66.3
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 1.3e-95 353.6 260 66.5
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 3.0e-95 352.4 267 65.5
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 6.6e-95 351.3 266 66.9
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 1.9e-94 349.7 263 65.0
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 3.3e-94 349.0 268 65.3
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 6.2e-93 344.7 268 66.0
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 1.1e-92 344.0 263 64.6
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 8.9e-92 340.9 263 65.4
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 8.9e-92 340.9 264 65.2
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 8.9e-92 340.9 266 63.2
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 1.2e-91 340.5 270 64.8
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 1.2e-91 340.5 262 66.0
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 1.5e-91 340.1 272 64.7
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 2.2e-90 336.3 267 64.4
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 2.9e-90 335.9 259 64.9
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 2.9e-90 335.9 268 64.2
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 1.1e-89 334.0 263 63.9
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 1.4e-89 333.6 266 62.4
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 3.2e-89 332.4 263 64.3
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 5.4e-89 331.6 267 62.2
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 7.0e-89 331.3 263 63.5
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 9.2e-89 330.9 266 60.9
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 2.0e-88 329.7 267 62.5
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 2.7e-88 329.3 259 64.1
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 4.6e-88 328.6 268 62.7
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 7.8e-88 327.8 267 62.5
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 3.9e-87 325.5 267 60.3
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 5.6e-86 321.6 266 60.2
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 3.6e-85 318.9 226 71.7
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 1.1e-84 317.4 264 59.1
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.4e-84 317.0 266 61.3
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 4.0e-84 315.5 264 60.2
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 1.2e-83 313.9 262 61.1
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 9.9e-83 310.8 273 57.9
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 2.9e-82 309.3 264 59.5
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 1.1e-81 307.4 217 71.4
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 7.1e-81 304.7 267 59.9
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 1.6e-80 303.5 194 77.3
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 2.1e-80 303.1 260 61.9
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 1.3e-79 300.4 267 59.6
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 2.3e-79 299.7 260 60.4
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 3.0e-79 299.3 236 66.9
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 3.9e-79 298.9 266 58.6
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 8.6e-79 297.7 214 69.2
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 1.1e-78 297.4 302 53.6
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 1.2e-77 293.9 267 58.8
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 1.2e-77 293.9 261 60.2
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 2.1e-77 293.1 244 60.2
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 3.6e-77 292.4 262 57.3
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 6.2e-77 291.6 274 54.7
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 1.1e-76 290.8 284 56.7
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 3.1e-76 289.3 260 59.2
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 6.8e-76 288.1 260 60.0
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 6.8e-76 288.1 270 57.8
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 8.9e-76 287.7 191 72.3
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 8.9e-76 287.7 260 59.2
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 1.2e-75 287.3 263 59.7
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 4.4e-75 285.4 213 66.2
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 3.2e-73 279.3 266 55.3
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 1.6e-72 276.9 269 52.8
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 7.8e-72 274.6 190 69.5
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 1.0e-71 274.2 254 58.3
Rhsim13G0235500 Rhododendron simsii HOM05D003201 ORTHO05D008805 1.5e-70 270.4 322 49.1
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 1.9e-70 270.0 275 52.7
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 1.1e-68 264.2 281 49.8
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 1.4e-68 263.8 212 64.2
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 1.4e-68 263.8 264 53.8
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 9.0e-68 261.2 197 67.5
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 3.2e-65 252.7 267 50.2
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 9.3e-65 251.1 198 65.2
Duzib093G2193 Durio zibethinus HOM05D003201 ORTHO05D008805 1.5e-62 243.8 267 51.7
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 3.3e-62 242.7 194 66.0
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 4.3e-62 242.3 283 51.6
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 7.3e-62 241.5 260 50.0
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 3.1e-60 236.1 258 51.9
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 1.5e-59 233.8 270 48.9
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.7e-58 230.3 190 62.6
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.3e-55 220.7 203 57.1
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 1.3e-55 220.7 262 46.9
AUR62004843 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.8e-55 220.3 144 71.5
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 1.1e-54 217.6 208 56.7
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 1.9e-54 216.9 191 58.6
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 4.0e-52 209.1 277 44.8
FAN21G2623 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.2e-43 181.0 161 59.6
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 4.5e-43 179.1 138 67.4
Ca_25246_v3 Cicer arietinum L. HOM05D003201 ORTHO05D008805 3.8e-42 176.0 159 57.9
COL.COLO4_24749 Corchorus olitorius HOM05D003201 ORTHO05D008805 3.2e-41 172.9 268 41.8
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 6.0e-40 168.7 178 50.6
Lj1A555G38 Lonicera japonica HOM05D003201 ORTHO05D008805 2.8e-37 159.8 171 56.1
Nitab4.5_0005125g0010 Nicotiana tabacum HOM05D003201 ORTHO05D008805 2.4e-36 156.8 153 58.8
PGSC0003DMG400026601 Solanum tuberosum HOM05D003201 ORTHO05D008805 2.4e-36 156.8 161 55.3
Hund07019 Selenicereus undatus HOM05D003201 ORTHO05D008805 3.1e-36 156.4 159 56.6
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 2.2e-29 133.7 253 36.0
CBR_g45550 Chara braunii HOM05D000019 ORTHO05D000353 6.3e-29 132.1 107 54.2
FAN11G4037 Fragaria x ananassa HOM05D003201 ORTHO05D008805 6.7e-23 112.1 70 72.9
FAN25G1903 Fragaria x ananassa HOM05D003201 ORTHO05D008805 4.8e-21 105.9 71 70.4
Cre14.g632791 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008805 4.1e-20 102.8 177 33.9
Cfa026017 Carpinus fangiana HOM05D003201 ORTHO05D124792 8.0e-16 88.6 137 36.5
MCO08G131 Micromonas commoda HOM05D003201 ORTHO05D008805 1.4e-15 87.8 210 31.9
PRCOL_00004726 Prasinoderma coloniale HOM05D003201 ORTHO05D008805 1.3e-13 81.3 178 33.1
BcaC07g37753 Brassica carinata HOM05D007105 ORTHO05D009304 1.6e-08 64.3 212 25.0
BolC8t48138H Brassica oleracea HOM05D007105 ORTHO05D009304 1.6e-08 64.3 212 25.0
CAN.G947.23 Capsicum annuum HOM05D007105 ORTHO05D009304 5.2e-07 59.3 197 23.9
BcaB04g18148 Brassica carinata HOM05D007105 ORTHO05D009304 6.7e-07 58.9 208 25.0
ATR0568G201 Amborella trichopoda HOM05D007105 ORTHO05D009304 8.8e-07 58.5 212 25.0
Sopen12g032090 Solanum pennellii HOM05D007105 ORTHO05D009304 1.5e-06 57.8 197 23.9
PGSC0003DMG400029377 Solanum tuberosum HOM05D007105 ORTHO05D009304 2.0e-06 57.4 201 23.9
A08p10520 Brassica napus HOM05D007105 ORTHO05D006179 9.7e-06 55.1 136 29.4
BraA08t33052Z Brassica rapa HOM05D007105 ORTHO05D009304 9.7e-06 55.1 136 29.4


User provided reference genes

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