Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 3.7e-296 1020.8 514 100.0
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 7.1e-255 883.6 514 85.4
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 4.0e-250 867.8 527 82.9
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 1.1e-247 859.8 504 86.7
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 7.4e-244 847.0 514 81.7
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 1.5e-241 839.3 515 81.0
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 8.4e-240 833.6 527 79.3
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 5.5e-239 830.9 527 78.6
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 7.1e-239 830.5 514 80.9
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 3.0e-237 825.1 529 78.8
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 5.1e-237 824.3 514 78.8
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 9.7e-236 820.1 527 77.6
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 9.7e-236 820.1 527 77.6
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 1.3e-235 819.7 516 78.5
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 1.1e-234 816.6 514 78.2
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 6.9e-234 813.9 527 78.2
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 1.2e-233 813.1 514 79.6
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 2.9e-232 808.5 528 77.3
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 3.8e-232 808.1 525 77.3
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 1.4e-231 806.2 514 77.4
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 5.5e-231 804.3 518 79.0
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 1.2e-230 803.1 512 77.3
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.6e-230 802.7 514 78.2
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 1.6e-230 802.7 515 77.9
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 1.4e-229 799.7 514 77.4
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 3.0e-229 798.5 527 75.5
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 3.9e-229 798.1 512 77.9
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 5.1e-229 797.7 512 77.7
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 1.5e-228 796.2 517 78.5
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 2.5e-228 795.4 520 76.2
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 7.4e-228 793.9 512 77.3
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 2.2e-227 792.3 517 77.4
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 2.8e-227 792.0 517 76.6
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 3.7e-227 791.6 514 76.8
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 5.3e-226 787.7 514 77.0
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 6.9e-226 787.3 527 75.1
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 2.0e-225 785.8 514 75.9
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 2.0e-225 785.8 507 76.5
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 3.4e-225 785.0 557 71.3
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 4.5e-225 784.6 525 75.2
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 1.0e-224 783.5 527 74.8
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 8.5e-224 780.4 557 71.3
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 1.1e-223 780.0 516 74.6
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 1.4e-223 779.6 486 81.1
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 9.4e-223 776.9 515 75.0
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 1.2e-222 776.5 533 71.9
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 2.3e-221 772.3 514 74.1
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 2.6e-220 768.8 528 72.7
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 3.3e-220 768.5 504 76.0
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 1.3e-219 766.5 529 72.0
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 1.1e-218 763.5 515 74.2
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 1.8e-218 762.7 516 73.4
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 3.1e-218 761.9 530 73.8
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 3.1e-218 761.9 516 73.4
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 9.1e-218 760.4 518 73.7
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 1.5e-217 759.6 504 76.2
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 2.0e-217 759.2 530 73.8
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 2.9e-216 755.4 546 71.1
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 6.3e-211 737.6 468 78.2
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 3.1e-210 735.3 538 69.1
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 1.6e-209 733.0 512 70.3
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 5.9e-209 731.1 515 70.5
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 4.2e-207 724.9 512 70.3
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 5.5e-207 724.5 515 70.7
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 7.2e-207 724.2 514 70.2
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 8.0e-206 720.7 514 69.3
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 1.2e-204 716.8 517 71.2
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 5.0e-200 701.4 514 70.4
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 3.2e-199 698.7 506 70.4
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 7.2e-199 697.6 514 68.7
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 9.4e-199 697.2 514 68.3
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 2.7e-198 695.7 517 68.1
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 6.1e-198 694.5 513 68.0
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 1.0e-197 693.7 503 69.8
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 1.4e-197 693.3 514 68.5
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 1.8e-197 693.0 516 68.4
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 2.3e-197 692.6 514 68.9
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 5.2e-197 691.4 516 68.2
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 6.8e-197 691.0 514 68.1
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 8.8e-197 690.6 524 66.2
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 5.7e-196 688.0 535 66.5
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 3.7e-195 685.3 513 67.3
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 3.1e-194 682.2 514 67.1
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 1.2e-193 680.2 526 65.8
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 1.6e-193 679.9 518 67.8
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 2.7e-193 679.1 506 68.6
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 5.9e-193 677.9 526 65.8
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 5.9e-193 677.9 536 65.7
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 8.6e-192 674.1 509 68.0
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 5.5e-191 671.4 514 65.2
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 7.2e-191 671.0 512 67.6
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 1.6e-190 669.8 537 64.6
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 3.6e-190 668.7 527 64.9
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 4.7e-190 668.3 431 77.7
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 3.4e-188 662.1 514 66.9
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 3.5e-185 652.1 511 64.0
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 7.8e-185 651.0 528 63.8
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 1.7e-184 649.8 528 64.2
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 6.6e-184 647.9 528 63.6
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 5.6e-183 644.8 528 63.4
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 4.7e-182 641.7 527 63.0
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 2.0e-180 636.3 442 73.5
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 4.9e-179 631.7 514 63.6
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 2.4e-178 629.4 514 62.3
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 2.1e-174 616.3 517 59.4
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 2.1e-174 616.3 514 60.5
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 1.5e-164 583.6 449 67.5
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 2.2e-163 579.7 442 66.7
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 1.9e-159 566.6 497 60.0
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 2.6e-156 556.2 355 77.7
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 2.4e-141 506.5 452 60.0
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 9.0e-133 478.0 400 62.2
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 1.5e-127 460.7 515 48.0
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 3.4e-124 449.5 529 46.5
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 7.6e-124 448.4 388 58.5
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 7.9e-121 438.3 502 45.4
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 4.2e-114 416.0 470 50.9
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 1.1e-103 381.3 474 44.9
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 1.2e-65 255.0 139 89.9
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 3.7e-62 243.4 441 38.8
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 1.2e-47 195.3 123 76.4
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 6.8e-40 169.5 137 67.2
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 2.9e-30 137.5 79 81.0
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 6.4e-30 136.3 273 36.3
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 1.8e-24 118.2 78 71.8
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 3.1e-24 117.5 73 74.0
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 5.8e-23 113.2 72 76.4
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 8.4e-22 109.4 143 39.9
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 9.3e-21 105.9 104 55.8
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 9.3e-21 105.9 97 53.6
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 1.3e-14 85.5 242 28.1
Actinidia18430 Actinidia chinensis HOM05D020173 ORTHO05D007020 1.2e-12 79.0 60 63.3
Actinidia18436 Actinidia chinensis HOM05D005650 ORTHO05D007020 1.8e-11 75.1 56 64.3
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 4.3e-10 70.5 53 56.6
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 7.4e-10 69.7 117 39.3
MCO11G935 Micromonas commoda HOM05D005650 ORTHO05D007020 5.3e-08 63.5 137 31.4
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 9.0e-08 62.8 40 80.0


User provided reference genes

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