Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031759 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.6e-25 118.6 61 100.0
Actinidia22894 Actinidia chinensis HOM05D004017 ORTHO05D004612 4.2e-21 104.0 60 88.3
vmacro20628 Vaccinium macrocarpon HOM05D004017 ORTHO05D004612 5.5e-21 103.6 60 85.0
Dinv28320 Davidia involucrata HOM05D004017 ORTHO05D004612 3.9e-19 97.4 60 81.7
HanXRQChr14g0442551 Helianthus annuus HOM05D004017 ORTHO05D004612 5.1e-19 97.1 60 80.0
MD02G1114700 Malus domestica HOM05D004017 ORTHO05D004612 8.7e-19 96.3 60 80.0
Lj2A500T36 Lonicera japonica HOM05D004017 ORTHO05D004612 1.1e-18 95.9 57 86.0
Hma1.2p1_0300F.1_g117960 Hydrangea macrophylla HOM05D004017 ORTHO05D004612 1.5e-18 95.5 60 80.0
TWI09G1144 Tripterygium wilfordii HOM05D004017 ORTHO05D004612 1.9e-18 95.1 60 80.0
GSVIVG01026635001 Vitis vinifera HOM05D004017 ORTHO05D004612 3.3e-18 94.4 60 81.7
QL06p053019 Quercus lobata HOM05D004017 ORTHO05D004612 4.3e-18 94.0 60 78.3
Lsat_1_v5_gn_2_73681 Lactuca sativa HOM05D004017 ORTHO05D004612 7.4e-18 93.2 60 78.3
ECA238G2486 Erigeron canadensis HOM05D004017 ORTHO05D004612 9.7e-18 92.8 60 76.7
Rhsim10G0195200 Rhododendron simsii HOM05D004017 ORTHO05D004612 2.2e-17 91.7 65 76.9
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 3.7e-17 90.9 60 78.3
Prupe.7G183500 Prunus persica HOM05D004017 ORTHO05D004612 6.3e-17 90.1 60 71.7
Migut.L00849 Erythranthe guttata HOM05D004017 ORTHO05D004612 8.2e-17 89.7 60 68.3
Nn6g31689 Nelumbo nucifera HOM05D004017 ORTHO05D004612 8.2e-17 89.7 60 68.3
FvH4_1g10270 Fragaria vesca HOM05D004017 ORTHO05D004612 1.1e-16 89.4 60 71.7
FAN19G1215 Fragaria x ananassa HOM05D004017 ORTHO05D004612 1.1e-16 89.4 60 71.7
FAN26G0543 Fragaria x ananassa HOM05D004017 ORTHO05D004612 1.1e-16 89.4 60 71.7
Lj2g0020546 Lotus japonicus HOM05D004017 ORTHO05D004612 1.1e-16 89.4 57 80.7
Manes.02G114300 Manihot esculenta HOM05D004017 ORTHO05D004612 1.4e-16 89.0 60 75.0
Oeu045735.2 Olea europaea HOM05D004017 ORTHO05D004612 1.4e-16 89.0 60 76.7
RcHm_v2.0_Chr2g0097091 Rosa chinensis HOM05D004017 ORTHO05D004612 1.4e-16 89.0 60 68.3
Thecc.01G005000 Theobroma cacao HOM05D004017 ORTHO05D004612 1.4e-16 89.0 60 76.7
Cpa.g.sc6.367 Carica papaya HOM05D004017 ORTHO05D004612 2.4e-16 88.2 60 75.0
Migut.L00851 Erythranthe guttata HOM05D004017 ORTHO05D004612 2.4e-16 88.2 60 66.7
Atru.chr3.128 Acer truncatum HOM05D004017 ORTHO05D004612 3.1e-16 87.8 60 73.3
Cc07_g11910 Coffea canephora HOM05D004017 ORTHO05D004612 3.1e-16 87.8 60 75.0
FAN23G1226 Fragaria x ananassa HOM05D004017 ORTHO05D004612 3.1e-16 87.8 60 68.3
FAN28G2227 Fragaria x ananassa HOM05D004017 ORTHO05D004612 4.1e-16 87.4 60 70.0
SGA_v2.0_scaffold61G21182 Striga asiatica HOM05D004017 ORTHO05D004612 6.9e-16 86.7 60 70.0
CiPaw.07G002300 Carya illinoinensis HOM05D004017 ORTHO05D004612 9.0e-16 86.3 60 71.7
Nitab4.5_0001467g0040 Nicotiana tabacum HOM05D004017 ORTHO05D004612 9.0e-16 86.3 60 68.3
Aa31LG6G12480 Aethionema arabicum HOM05D004017 ORTHO05D004612 1.2e-15 85.9 60 68.3
Peaxi162Scf00121g02447 Petunia axillaris HOM05D004017 ORTHO05D004612 1.2e-15 85.9 60 68.3
TAR628G0231 Trochodendron aralioides HOM05D004017 ORTHO05D004612 1.2e-15 85.9 59 72.9
Duzib147G1448 Durio zibethinus HOM05D004017 ORTHO05D004612 1.5e-15 85.5 60 73.3
TPR.G33889 Trifolium pratense HOM05D004017 ORTHO05D004612 1.5e-15 85.5 60 70.0
Glyma.01G158400 Glycine max HOM05D004017 ORTHO05D004612 2.0e-15 85.1 60 73.3
Gohir.A02G178100 Gossypium hirsutum HOM05D004017 ORTHO05D004612 2.0e-15 85.1 60 71.7
Psat2g148040 Pisum sativum HOM05D004017 ORTHO05D004612 2.0e-15 85.1 60 68.3
arahy.Tifrunner.gnm1.ann1.BKHX3W Arachis hypogaea HOM05D004017 ORTHO05D004612 3.4e-15 84.3 57 75.4
arahy.Tifrunner.gnm1.ann1.LHXL5N Arachis hypogaea HOM05D004017 ORTHO05D004612 3.4e-15 84.3 57 75.4
CsaV3_3G000200 Cucumis sativus L. HOM05D004017 ORTHO05D004612 3.4e-15 84.3 60 60.0
Thhalv10024245m.g Eutrema salsugineum HOM05D004017 ORTHO05D004612 3.4e-15 84.3 60 68.3
Gohir.D03G001700 Gossypium hirsutum HOM05D004017 ORTHO05D004612 3.4e-15 84.3 60 71.7
Aqoxy6G01621 Aquilegia oxysepala HOM05D004017 ORTHO05D004612 4.5e-15 84.0 60 68.3
DCAR_016694 Daucus carota HOM05D004017 ORTHO05D004612 4.5e-15 84.0 57 73.7
Lalb_Chr16g0380081 Lupinus albus HOM05D004017 ORTHO05D004612 4.5e-15 84.0 57 73.7
Gorai.003G002000 Gossypium raimondii HOM05D004017 ORTHO05D004612 5.9e-15 83.6 60 70.0
Phvul.002G116900 Phaseolus vulgaris HOM05D004017 ORTHO05D004612 5.9e-15 83.6 60 71.7
Nitab4.5_0004608g0010 Nicotiana tabacum HOM05D004017 ORTHO05D004612 7.7e-15 83.2 59 69.5
PSO541G0703 Papaver somniferum HOM05D004017 ORTHO05D004612 7.7e-15 83.2 60 70.0
C07p61210 Brassica napus HOM05D004017 ORTHO05D004612 1.0e-14 82.8 60 68.3
BolC7t46547H Brassica oleracea HOM05D004017 ORTHO05D004612 1.0e-14 82.8 60 68.3
CARHR243850 Cardamine hirsuta HOM05D004017 ORTHO05D004612 1.0e-14 82.8 60 68.3
Sp7g33300 Schrenkiella parvula HOM05D004017 ORTHO05D004612 1.0e-14 82.8 60 68.3
CAN.G1238.14 Capsicum annuum HOM05D004017 ORTHO05D004612 1.3e-14 82.4 60 61.7
MELO3C013715.2 Cucumis melo HOM05D004017 ORTHO05D004612 1.3e-14 82.4 60 58.3
PGR142G4352 Punica granatum HOM05D004017 ORTHO05D004612 1.3e-14 82.4 60 71.7
Carub.0007s0481 Capsella rubella HOM05D004017 ORTHO05D004612 2.9e-14 81.3 60 66.7
Sed0025898 Sechium edule HOM05D004017 ORTHO05D004612 2.9e-14 81.3 57 61.4
THA.LOC104819715 Tarenaya hassleriana HOM05D004017 ORTHO05D004612 2.9e-14 81.3 60 65.0
A03p63640 Brassica napus HOM05D004017 ORTHO05D004612 3.8e-14 80.9 60 66.7
Medtr5g024250 Medicago truncatula HOM05D004017 ORTHO05D004612 3.8e-14 80.9 60 63.3
Solyc02g082660.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 5.0e-14 80.5 60 63.3
Sopen02g027400 Solanum pennellii HOM05D004017 ORTHO05D004612 6.5e-14 80.1 60 61.7
AT4G35520 Arabidopsis thaliana HOM05D004017 ORTHO05D004612 1.1e-13 79.3 60 65.0
AL7G15650 Arabidopsis lyrata HOM05D004017 ORTHO05D004612 1.4e-13 79.0 60 63.3
Sabra05G0084300 Salix brachista HOM05D004017 ORTHO05D004612 1.4e-13 79.0 57 68.4
BraA03t15435Z Brassica rapa HOM05D004017 ORTHO05D004612 1.9e-13 78.6 60 65.0
CANSAT25G1082 Cannabis sativa HOM05D004017 ORTHO05D004612 2.5e-13 78.2 60 61.7
Ciclev10024702m.g Citrus clementina HOM05D004017 ORTHO05D004612 3.2e-13 77.8 60 68.3
COL.COLO4_22554 Corchorus olitorius HOM05D004017 ORTHO05D004612 3.2e-13 77.8 59 64.4
MD15G1230500 Malus domestica HOM05D004017 ORTHO05D004612 3.2e-13 77.8 55 74.5
Potri.005G101900 Populus trichocarpa HOM05D004017 ORTHO05D004612 3.2e-13 77.8 57 68.4
Ca_24985_v3 Cicer arietinum L. HOM05D004017 ORTHO05D004612 5.5e-13 77.0 59 62.7
Sc03g0003980 Simmondsia chinensis HOM05D004017 ORTHO05D004612 1.2e-12 75.9 60 60.0
ATR0807G072 Amborella trichopoda HOM05D004017 ORTHO05D004612 2.1e-12 75.1 60 61.7
Os09g0551900 Oryza sativa ssp. japonica HOM05D004017 ORTHO05D004612 1.4e-11 72.4 60 55.0
Zm00001eb104360 Zea mays HOM05D004017 ORTHO05D004612 1.4e-11 72.4 60 53.3
Eucgr.J02538 Eucalyptus grandis HOM05D004017 ORTHO05D004612 2.3e-11 71.6 60 60.0
HPP92_020507 Vanilla planifolia HOM05D004017 ORTHO05D004612 3.0e-11 71.2 60 56.7
Hund03598 Selenicereus undatus HOM05D004017 ORTHO05D004612 1.1e-10 69.3 60 60.0
MBI05_g14359_MAGBIO Magnolia biondii HOM05D004017 ORTHO05D004612 5.7e-10 67.0 44 75.0
unitig_747.g21784 Utricularia gibba HOM05D004017 ORTHO05D004612 2.6e-07 58.2 55 50.9
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 4.5e-07 57.4 60 53.3


User provided reference genes

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