Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031692 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D024695 8.4e-46 186.8 104 100.0
CSS0044228 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D024695 3.0e-43 178.3 104 98.1
CSS0035942 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D008248 8.1e-41 170.2 104 87.5
CSS0020734 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D024695 1.1e-37 159.8 104 90.4
Hma1.2p1_0112F.1_g054935 Hydrangea macrophylla HOM05D000032 ORTHO05D008248 3.8e-22 108.2 101 60.4
Rhsim09G0043500 Rhododendron simsii HOM05D000032 ORTHO05D008248 1.6e-20 102.8 76 71.1
Dinv29787 Davidia involucrata HOM05D000032 ORTHO05D008248 3.5e-20 101.7 80 68.8
vmacro00534 Vaccinium macrocarpon HOM05D000032 ORTHO05D008248 2.3e-19 99.0 93 60.2
Lj3C638G9 Lonicera japonica HOM05D000032 ORTHO05D008248 4.3e-18 94.7 81 65.4
Nitab4.5_0003474g0040 Nicotiana tabacum HOM05D000032 ORTHO05D008248 4.8e-17 91.3 102 51.0
Nitab4.5_0002937g0050 Nicotiana tabacum HOM05D000032 ORTHO05D008248 1.4e-16 89.7 102 50.0
CANSAT78G0248 Cannabis sativa HOM05D000032 ORTHO05D008248 2.6e-15 85.5 100 56.0
Cc03_g06800 Coffea canephora HOM05D000032 ORTHO05D008248 5.9e-15 84.3 101 51.5
Atru.chr4.1879 Acer truncatum HOM05D000032 ORTHO05D008248 1.0e-14 83.6 79 55.7
Lalb_Chr10g0097291 Lupinus albus HOM05D000032 ORTHO05D008248 1.0e-14 83.6 82 56.1
Sabra10G0043300 Salix brachista HOM05D000032 ORTHO05D008248 1.3e-14 83.2 77 64.9
Glyma.07G074800 Glycine max HOM05D000032 ORTHO05D008248 3.8e-14 81.6 77 55.8
Oeu023144.1 Olea europaea HOM05D000032 ORTHO05D008248 3.8e-14 81.6 106 50.9
TAR365G0107 Trochodendron aralioides HOM05D000032 ORTHO05D008248 8.5e-14 80.5 86 51.2
Potri.010G063600 Populus trichocarpa HOM05D000032 ORTHO05D008248 1.1e-13 80.1 81 59.3
TPR.G9295 Trifolium pratense HOM05D000032 ORTHO05D008248 1.4e-13 79.7 81 59.3
GSVIVG01027957001 Vitis vinifera HOM05D000032 ORTHO05D008248 1.4e-13 79.7 77 59.7
Medtr7g057250 Medicago truncatula HOM05D000032 ORTHO05D008248 3.2e-13 78.6 83 54.2
TWI73G0114 Tripterygium wilfordii HOM05D000032 ORTHO05D008248 5.5e-13 77.8 105 46.7
Phvul.010G094600 Phaseolus vulgaris HOM05D000032 ORTHO05D008248 7.2e-13 77.4 82 53.7
Ciclev10004340m.g Citrus clementina HOM05D000032 ORTHO05D008248 9.4e-13 77.0 73 58.9
Actinidia32966 Actinidia chinensis HOM05D000032 ORTHO05D008248 1.2e-12 76.6 52 75.0
Ca_03626_v3 Cicer arietinum L. HOM05D000032 ORTHO05D008248 1.2e-12 76.6 80 55.0
Duzib151G1189 Durio zibethinus HOM05D000032 ORTHO05D008248 3.6e-12 75.1 90 48.9
Lsat_1_v5_gn_2_42041 Lactuca sativa HOM05D000032 ORTHO05D008248 6.1e-12 74.3 85 55.3
MD12G1094500 Malus domestica HOM05D000032 ORTHO05D008248 7.9e-12 73.9 107 51.4
VMungo0331G1285 Vigna mungo HOM05D000032 ORTHO05D008248 7.9e-12 73.9 78 53.8
SGA_v2.0_scaffold86G26859 Striga asiatica HOM05D000032 ORTHO05D008248 1.8e-11 72.8 88 51.1
Cfa014812 Carpinus fangiana HOM05D000032 ORTHO05D008248 3.0e-11 72.0 99 46.5
Psat3g146960 Pisum sativum HOM05D000032 ORTHO05D008248 3.0e-11 72.0 85 49.4
Prupe.5G037600 Prunus persica HOM05D000032 ORTHO05D008248 3.9e-11 71.6 76 53.9
CiPaw.01G175600 Carya illinoinensis HOM05D000032 ORTHO05D008248 8.8e-11 70.5 74 54.1
ClCG06G007360 Citrullus lanatus HOM05D000032 ORTHO05D024695 8.8e-11 70.5 77 54.5
Manes.15G047300 Manihot esculenta HOM05D000032 ORTHO05D008248 8.8e-11 70.5 107 46.7
MD14G1084300 Malus domestica HOM05D000032 ORTHO05D008248 1.1e-10 70.1 90 46.7
Sopen09g033680 Solanum pennellii HOM05D000032 ORTHO05D008248 1.1e-10 70.1 100 48.0
Thecc.04G268600 Theobroma cacao HOM05D000032 ORTHO05D008248 1.5e-10 69.7 90 47.8
Cpa.g.sc59.33 Carica papaya HOM05D000032 ORTHO05D024695 2.0e-10 69.3 105 47.6
Haze_11492 Corylus avellana HOM05D000032 ORTHO05D008248 2.0e-10 69.3 92 51.1
Gohir.D09G231300 Gossypium hirsutum HOM05D000032 ORTHO05D008248 2.5e-10 68.9 67 56.7
Peaxi162Scf00125g01324 Petunia axillaris HOM05D000032 ORTHO05D008248 2.5e-10 68.9 108 43.5
Ah.04g153530 Amaranthus hybridus HOM05D000032 ORTHO05D008248 3.3e-10 68.6 60 61.7
DCAR_024298 Daucus carota HOM05D000032 ORTHO05D008248 3.3e-10 68.6 105 49.5
ECA232G3455 Erigeron canadensis HOM05D000032 ORTHO05D008248 3.3e-10 68.6 69 56.5
Migut.G00589 Erythranthe guttata HOM05D000032 ORTHO05D008248 3.3e-10 68.6 85 50.6
Gorai.006G254000 Gossypium raimondii HOM05D000032 ORTHO05D008248 4.3e-10 68.2 85 47.1
Nn1g03022 Nelumbo nucifera HOM05D000032 ORTHO05D008248 4.3e-10 68.2 78 53.8
SalBow2G1692 Salvia bowleyana HOM05D000032 ORTHO05D008248 4.3e-10 68.2 110 44.5
CAN.G812.30 Capsicum annuum HOM05D000032 ORTHO05D008248 5.7e-10 67.8 98 43.9
Gohir.A09G230200 Gossypium hirsutum HOM05D000032 ORTHO05D008248 7.4e-10 67.4 68 55.9
arahy.Tifrunner.gnm1.ann1.W310LH Arachis hypogaea HOM05D000032 ORTHO05D008248 9.7e-10 67.0 73 52.1
COL.COLO4_15998 Corchorus olitorius HOM05D000032 ORTHO05D008248 1.3e-09 66.6 90 47.8
MELO3C023052.2 Cucumis melo HOM05D000032 ORTHO05D008248 1.3e-09 66.6 77 51.9
Lj3g0023133 Lotus japonicus HOM05D000032 ORTHO05D008248 2.2e-09 65.9 99 40.4
ECA232G1204 Erigeron canadensis HOM05D000032 ORTHO05D008248 2.8e-09 65.5 77 50.6
Sed0024548 Sechium edule HOM05D000032 ORTHO05D008248 3.7e-09 65.1 104 45.2
Solyc09g090740.4 Solanum lycopersicum HOM05D000032 ORTHO05D008248 4.8e-09 64.7 96 44.8
PGSC0003DMG400001506 Solanum tuberosum HOM05D000032 ORTHO05D008248 4.8e-09 64.7 96 44.8
EL10Ac3g06715 Beta vulgaris HOM05D000032 ORTHO05D008248 6.3e-09 64.3 60 58.3
CsaV3_2G012320 Cucumis sativus L. HOM05D000032 ORTHO05D008248 6.3e-09 64.3 75 49.3
arahy.Tifrunner.gnm1.ann1.15AJKM Arachis hypogaea HOM05D000032 ORTHO05D008248 8.2e-09 63.9 72 50.0
Eucgr.H02888 Eucalyptus grandis HOM05D000032 ORTHO05D008248 1.1e-08 63.5 105 44.8
FAN28G1398 Fragaria x ananassa HOM05D000032 ORTHO05D008248 4.1e-08 61.6 96 44.8
PGR142G3130 Punica granatum HOM05D000032 ORTHO05D008248 4.1e-08 61.6 79 55.7
FAN23G0160 Fragaria x ananassa HOM05D000032 ORTHO05D008248 6.9e-08 60.8 96 43.8
Sc13g0003050 Simmondsia chinensis HOM05D000032 ORTHO05D008248 6.9e-08 60.8 67 61.2
PSO339G1682 Papaver somniferum HOM05D000032 ORTHO05D008248 1.2e-07 60.1 85 43.5
RcHm_v2.0_Chr3g0492441 Rosa chinensis HOM05D000032 ORTHO05D008248 1.5e-07 59.7 106 46.2
Hund20473 Selenicereus undatus HOM05D000032 ORTHO05D008248 1.5e-07 59.7 90 41.1
THA.LOC104802593 Tarenaya hassleriana HOM05D000032 ORTHO05D008248 1.5e-07 59.7 80 46.2
MBI10_g26047_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D008248 2.6e-07 58.9 65 55.4
AT3G16840 Arabidopsis thaliana HOM05D000032 ORTHO05D008248 2.2e-06 55.8 75 48.0
Psat3g117880 Pisum sativum HOM05D000032 ORTHO05D008248 3.8e-06 55.1 44 63.6
Carub.0003s1655 Capsella rubella HOM05D000032 ORTHO05D008248 6.5e-06 54.3 108 38.0
unitig_899.g14854 Utricularia gibba HOM05D000032 ORTHO05D008248 6.5e-06 54.3 103 43.7
AL3G29800 Arabidopsis lyrata HOM05D000032 ORTHO05D008248 8.5e-06 53.9 76 43.4
CARHR092100 Cardamine hirsuta HOM05D000032 ORTHO05D008248 8.5e-06 53.9 76 48.7
CARHR247950 Cardamine hirsuta HOM05D000032 ORTHO05D008248 8.5e-06 53.9 76 44.7


User provided reference genes

Program Settings