Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 0.0e+00 1261.5 682 100.0
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 9.7e-292 1006.5 698 77.7
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 4.6e-286 987.6 682 82.7
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 3.8e-280 968.0 692 79.3
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 4.2e-279 964.5 684 79.4
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 5.3e-266 921.0 687 75.8
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 1.2e-265 919.8 685 75.3
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 8.8e-261 903.7 697 69.6
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 1.1e-258 896.7 714 74.2
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 4.1e-258 894.8 686 72.2
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 1.4e-253 879.8 699 70.8
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 5.7e-252 874.4 685 74.6
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 1.4e-250 869.8 685 72.0
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 2.1e-246 855.9 689 69.1
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 2.1e-246 855.9 696 67.2
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 3.6e-246 855.1 699 68.0
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 2.8e-243 845.5 696 67.0
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 6.3e-243 844.3 693 71.4
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 1.8e-242 842.8 699 66.8
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 5.4e-242 841.3 693 71.6
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 7.0e-242 840.9 697 70.7
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 9.2e-242 840.5 697 69.7
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 1.3e-240 836.6 700 65.3
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 2.9e-240 835.5 692 70.8
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 8.6e-240 833.9 696 67.8
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 1.5e-239 833.2 692 70.5
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 5.6e-239 831.2 738 67.8
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 5.6e-239 831.2 693 70.7
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 2.1e-238 829.3 688 68.8
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 2.1e-238 829.3 699 70.2
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 3.1e-237 825.5 700 67.0
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 6.8e-237 824.3 693 69.4
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 2.0e-236 822.8 692 70.4
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 4.9e-235 818.1 699 66.2
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 4.9e-235 818.1 702 64.2
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 2.4e-234 815.8 711 64.4
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 5.4e-234 814.7 682 67.0
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 6.0e-233 811.2 706 66.0
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.7e-232 809.7 695 69.1
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 3.9e-232 808.5 696 64.2
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 6.6e-232 807.7 698 69.3
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 3.3e-231 805.4 706 64.6
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 9.5e-231 803.9 695 67.9
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 6.2e-230 801.2 691 65.6
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 6.2e-230 801.2 696 64.2
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 3.1e-229 798.9 701 68.0
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 2.6e-228 795.8 717 64.9
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 2.2e-227 792.7 696 69.5
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 4.9e-227 791.6 692 66.8
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 1.6e-225 786.6 703 63.9
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 6.0e-225 784.6 689 67.1
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 7.8e-225 784.3 690 66.2
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.7e-224 783.1 646 68.9
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 2.3e-224 782.7 697 64.3
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 2.5e-223 779.2 698 65.0
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 2.8e-222 775.8 698 63.3
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 2.3e-221 772.7 701 63.8
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 5.2e-221 771.5 716 67.2
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 1.2e-220 770.4 706 64.3
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 2.9e-219 765.8 698 63.2
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 7.1e-218 761.1 695 65.5
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 2.1e-217 759.6 687 64.8
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 2.1e-214 749.6 690 63.6
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 1.4e-213 746.9 675 68.6
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 6.8e-213 744.6 738 60.8
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 2.2e-211 739.6 609 66.8
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 4.9e-211 738.4 686 64.6
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 1.9e-210 736.5 710 64.9
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 1.9e-210 736.5 698 63.5
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 3.2e-210 735.7 708 65.5
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 4.6e-209 731.9 694 64.8
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 1.7e-208 729.9 703 64.7
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 2.1e-206 723.0 696 59.1
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 2.8e-206 722.6 692 65.5
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 1.1e-205 720.7 710 58.6
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 1.1e-205 720.7 693 64.6
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 3.4e-204 715.7 703 60.7
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 4.4e-204 715.3 690 63.5
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 2.2e-203 713.0 522 71.1
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 6.4e-203 711.4 698 58.6
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.6e-201 706.8 697 60.3
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 6.0e-201 704.9 708 59.5
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 1.5e-199 700.3 696 61.6
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 1.3e-198 697.2 696 58.6
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 4.8e-198 695.3 689 63.9
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 2.4e-197 693.0 704 59.1
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 4.0e-197 692.2 749 60.1
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 4.9e-195 685.3 694 63.4
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.2e-188 664.1 690 57.7
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 7.1e-186 654.8 695 57.1
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 9.3e-186 654.4 695 57.1
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 1.8e-184 650.2 694 56.6
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 3.0e-184 649.4 640 63.9
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 1.1e-183 647.5 696 56.8
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 4.8e-182 642.1 539 66.2
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 2.4e-181 639.8 696 55.5
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 2.4e-181 639.8 565 63.5
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 4.9e-179 632.1 564 63.1
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 6.1e-177 625.2 707 54.7
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 2.2e-171 606.7 731 53.9
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 1.6e-169 600.5 534 63.1
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 2.7e-169 599.7 564 61.0
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 8.8e-168 594.7 556 59.9
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 1.3e-166 590.9 538 62.3
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 8.8e-160 568.2 439 77.4
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 8.8e-160 568.2 561 58.8
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 7.0e-149 531.9 495 62.2
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 2.7e-145 520.0 584 52.6
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 3.1e-141 506.5 611 51.9
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 1.4e-136 491.1 691 46.2
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 6.6e-131 472.2 353 72.5
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 4.7e-129 466.1 328 75.0
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 1.7e-126 457.6 320 74.4
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 7.3e-122 442.2 325 71.1
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 3.4e-111 406.8 403 57.1
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 9.8e-111 405.2 351 67.8
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 2.2e-110 404.1 351 67.2
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 6.8e-104 382.5 567 43.6
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 1.2e-92 345.1 793 34.7
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 1.9e-90 337.8 815 34.0
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 2.6e-87 327.4 369 52.6
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 8.1e-81 305.8 370 50.5
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 4.5e-71 273.5 357 53.2
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.6e-65 255.0 301 51.2
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-62 245.4 303 56.4
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 3.8e-62 243.8 286 52.4
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 5.7e-58 229.9 412 40.5
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 2.8e-57 227.6 215 60.9
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 1.0e-54 219.2 187 66.3
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 5.0e-54 216.9 140 80.7
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 2.2e-49 201.4 184 52.7
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.0e-42 178.3 125 75.2
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 7.0e-40 169.9 276 42.0
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 4.4e-34 150.6 137 62.8
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 5.5e-29 133.7 156 50.6
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 2.0e-23 115.2 375 28.0
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 2.3e-19 101.7 83 65.1
Actinidia02692 Actinidia chinensis HOM05D005511 ORTHO05D006616 6.8e-19 100.1 74 70.3
Sc03g0008960 Simmondsia chinensis HOM05D005511 ORTHO05D006616 2.6e-18 98.2 147 65.3
Actinidia02691 Actinidia chinensis HOM05D005511 ORTHO05D006616 1.2e-12 79.3 55 69.1
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 1.2e-07 62.8 50 58.0
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 3.5e-07 61.2 52 50.0
PRCOL_00003186 Prasinoderma coloniale HOM05D000032 ORTHO05D006970 1.7e-06 58.9 44 54.5
SEGI_09522 Sequoiadendron giganteum HOM05D000874 ORTHO05D001267 5.0e-06 57.4 63 47.6


User provided reference genes

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