Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 4.9e-220 767.7 446 100.0
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.2e-202 709.9 446 88.8
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 2.8e-162 575.9 450 71.3
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.9e-156 555.8 446 68.2
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.3e-147 525.8 452 65.5
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 1.6e-146 523.5 458 71.0
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 2.8e-146 522.7 446 69.7
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 6.2e-146 521.5 502 62.0
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 1.5e-144 516.9 449 69.0
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 2.9e-143 512.7 466 64.8
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 2.4e-142 509.6 469 63.1
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 7.0e-142 508.1 457 70.2
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 3.0e-140 502.7 483 62.5
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.1e-139 500.7 446 65.0
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 7.3e-139 498.0 452 64.4
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.8e-138 496.1 458 64.6
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 2.8e-138 496.1 443 65.5
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 1.1e-137 494.2 463 62.9
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 1.4e-137 493.8 453 69.5
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 9.9e-136 487.6 456 61.6
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 1.7e-135 486.9 467 57.8
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 4.9e-135 485.3 457 63.2
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.1e-134 484.2 450 69.1
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 2.3e-132 476.5 454 62.3
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 2.3e-132 476.5 475 67.6
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.1e-132 475.3 499 61.7
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 6.6e-132 474.9 460 64.3
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 6.6e-132 474.9 451 66.5
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 8.6e-132 474.6 457 61.5
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.1e-131 474.2 491 60.1
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.9e-131 473.4 484 57.0
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 2.5e-131 473.0 453 65.6
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.3e-131 472.2 476 58.6
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.3e-131 472.2 476 58.4
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 4.3e-131 472.2 476 58.4
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 5.6e-131 471.9 460 63.7
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.6e-131 471.9 497 60.6
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 7.3e-131 471.5 494 61.9
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 1.2e-130 470.7 458 64.8
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 2.8e-130 469.5 497 59.6
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 3.6e-130 469.2 455 65.3
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 8.1e-130 468.0 468 59.0
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 1.8e-129 466.8 466 61.8
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 5.2e-129 465.3 496 61.1
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 6.8e-129 464.9 477 56.6
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.6e-128 463.0 444 64.4
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 3.4e-128 462.6 473 63.0
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 7.6e-128 461.5 505 59.6
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.7e-127 460.3 447 61.3
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 6.4e-127 458.4 497 60.6
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 8.4e-127 458.0 465 58.9
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 1.1e-126 457.6 482 63.7
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 2.4e-126 456.4 449 59.2
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 7.1e-126 454.9 443 62.8
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 1.3e-124 450.7 449 60.4
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 1.9e-123 446.8 469 60.3
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 1.9e-123 446.8 443 63.4
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 7.3e-123 444.9 459 63.0
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 1.3e-122 444.1 454 63.0
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 1.4e-121 440.7 414 69.1
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 6.9e-121 438.3 446 66.6
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 6.9e-121 438.3 529 53.3
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 2.0e-120 436.8 491 59.9
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 4.4e-120 435.6 525 55.8
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 2.2e-119 433.3 483 58.2
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 1.9e-118 430.3 459 53.8
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 1.9e-118 430.3 454 60.6
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 4.2e-118 429.1 447 55.7
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 7.1e-118 428.3 531 51.6
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 3.5e-117 426.0 518 55.8
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 3.9e-116 422.5 449 58.1
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.1e-113 414.5 456 53.1
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 1.1e-113 414.5 470 54.3
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 4.0e-113 412.5 456 60.7
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 4.0e-113 412.5 455 53.8
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 2.6e-112 409.8 480 55.8
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 3.4e-112 409.5 478 55.2
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 9.9e-112 407.9 453 57.8
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 1.3e-111 407.5 476 58.4
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 1.1e-110 404.4 466 57.5
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 2.4e-110 403.3 450 59.1
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 3.2e-110 402.9 464 62.9
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 4.2e-110 402.5 454 52.6
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 5.4e-110 402.1 453 54.7
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 7.1e-110 401.7 450 53.3
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 7.1e-110 401.7 450 58.7
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 1.6e-109 400.6 456 56.1
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.3e-108 397.5 450 58.7
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 4.3e-107 392.5 457 61.7
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 9.6e-107 391.3 466 51.9
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 1.4e-105 387.5 466 56.0
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 9.0e-105 384.8 465 56.8
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 2.2e-103 380.2 458 58.1
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 3.8e-103 379.4 501 49.3
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 3.2e-102 376.3 456 56.8
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 3.2e-102 376.3 433 58.0
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 1.0e-100 371.3 458 57.0
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 5.7e-99 365.5 513 55.6
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 6.2e-98 362.1 502 54.0
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 1.0e-95 354.8 459 49.7
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.5e-94 350.1 414 51.0
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 7.1e-94 348.6 481 50.1
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 1.3e-92 344.4 411 54.0
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.1e-91 341.3 449 48.8
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 1.5e-91 340.9 495 46.5
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 2.5e-91 340.1 197 85.3
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.3e-90 337.8 457 47.5
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 7.2e-86 322.0 401 50.1
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 3.6e-85 319.7 452 46.2
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 1.0e-84 318.2 475 53.1
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 3.3e-83 313.2 437 52.2
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 1.4e-81 307.8 437 46.2
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 2.0e-80 303.9 171 87.7
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 2.7e-77 293.5 167 86.8
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 6.1e-77 292.4 511 40.3
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 1.8e-76 290.8 490 51.2
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.1e-75 288.1 191 76.4
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 3.3e-75 286.6 472 44.7
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 4.1e-73 279.6 387 53.7
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 9.1e-73 278.5 347 51.0
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.9e-71 273.5 333 55.9
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 2.6e-67 260.4 395 47.1
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 1.7e-58 231.1 496 40.7
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 5.4e-57 226.1 128 84.4
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 1.2e-51 208.4 171 64.9
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 4.9e-50 203.0 398 37.9
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 5.6e-38 162.9 157 52.2
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.8e-36 157.9 414 34.8
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 1.5e-35 154.8 454 32.4
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 5.8e-35 152.9 173 48.0
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 6.0e-32 142.9 96 75.0
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 3.6e-29 133.7 147 45.6
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.4e-28 131.7 345 33.3
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 3.4e-27 127.1 156 50.6
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 5.4e-25 119.8 65 90.8
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 2.1e-21 107.8 97 61.9
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 7.6e-19 99.4 112 51.8
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 7.6e-19 99.4 112 51.8
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.3e-18 98.6 116 50.9
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 4.6e-16 90.1 60 76.7
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 8.6e-15 85.9 416 27.4
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 8.6e-15 85.9 416 27.4
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 3.3e-14 84.0 197 34.0
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.2e-13 82.0 74 62.2
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 1.5e-11 75.1 90 45.6
ECA238G0891 Erigeron canadensis HOM05D000230 ORTHO05D000176 3.3e-06 57.4 139 24.5
Mapoly0183s0015 Marchantia polymorpha HOM05D000230 ORTHO05D000176 4.3e-06 57.0 128 30.5
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 5.6e-06 56.6 126 31.0
Sp5g03890 Schrenkiella parvula HOM05D000230 ORTHO05D000176 5.6e-06 56.6 127 24.4
Aa31LG10G13570 Aethionema arabicum HOM05D000230 ORTHO05D000176 7.3e-06 56.2 127 24.4
AT3G59100 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 7.3e-06 56.2 127 24.4
EL10Ac4g10331 Beta vulgaris HOM05D000230 ORTHO05D000176 7.3e-06 56.2 119 28.6
BcaB02g06841 Brassica carinata HOM05D000230 ORTHO05D000176 7.3e-06 56.2 137 27.7
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 7.3e-06 56.2 127 24.4
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 7.3e-06 56.2 127 24.4
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 7.3e-06 56.2 127 24.4
Carub.0005s2586 Capsella rubella HOM05D000230 ORTHO05D000176 7.3e-06 56.2 127 24.4
AUR62000045 Chenopodium quinoa HOM05D000230 ORTHO05D000176 7.3e-06 56.2 119 28.6
AUR62019215 Chenopodium quinoa HOM05D000230 ORTHO05D000176 7.3e-06 56.2 119 28.6
Hund21655 Selenicereus undatus HOM05D000230 ORTHO05D000176 7.3e-06 56.2 133 29.3
SEGI_09680 Sequoiadendron giganteum HOM05D000230 ORTHO05D000176 7.3e-06 56.2 150 28.7
Thhalv10005734m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 9.6e-06 55.8 127 24.4


User provided reference genes

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