Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 4.4e-109 397.9 191 100.0
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 1.9e-96 355.9 191 92.1
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.6e-95 351.7 188 91.5
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.6e-95 351.7 188 91.5
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.6e-95 351.7 188 91.5
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 6.2e-95 350.9 189 91.5
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 8.9e-94 347.1 203 86.7
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 1.5e-93 346.3 189 89.4
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 1.5e-93 346.3 189 91.5
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 2.0e-93 345.9 189 89.4
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 5.8e-93 344.4 189 87.8
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 5.8e-93 344.4 189 88.9
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 1.3e-92 343.2 183 91.8
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 1.7e-92 342.8 183 91.3
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 1.7e-92 342.8 187 89.8
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 1.7e-92 342.8 191 88.0
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 2.2e-92 342.4 186 89.8
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 2.2e-92 342.4 186 89.8
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 2.2e-92 342.4 187 88.8
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 2.9e-92 342.0 183 91.3
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 3.7e-92 341.7 187 89.3
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 3.7e-92 341.7 183 91.3
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 4.9e-92 341.3 189 89.4
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 4.9e-92 341.3 187 89.3
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 4.9e-92 341.3 187 87.7
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 6.4e-92 340.9 189 88.9
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 6.4e-92 340.9 186 87.6
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.4e-92 340.9 189 88.4
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 6.4e-92 340.9 183 90.2
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 8.3e-92 340.5 187 89.8
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 8.3e-92 340.5 188 87.8
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 8.3e-92 340.5 188 87.8
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 8.3e-92 340.5 188 87.8
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 8.3e-92 340.5 187 88.8
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 1.1e-91 340.1 187 87.7
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.1e-91 340.1 183 89.6
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 1.4e-91 339.7 184 90.8
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 1.9e-91 339.3 189 88.9
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.9e-91 339.3 187 89.3
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 3.2e-91 338.6 183 89.6
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 4.1e-91 338.2 188 87.2
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 4.1e-91 338.2 187 88.2
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 4.1e-91 338.2 187 88.2
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 4.1e-91 338.2 187 88.2
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 4.1e-91 338.2 187 88.2
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 4.1e-91 338.2 187 88.2
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 4.1e-91 338.2 187 88.2
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 5.4e-91 337.8 187 88.2
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 5.4e-91 337.8 191 86.4
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 7.1e-91 337.4 183 89.1
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 7.1e-91 337.4 189 87.3
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 7.1e-91 337.4 184 90.2
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 9.2e-91 337.0 183 89.6
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 9.2e-91 337.0 183 89.6
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 9.2e-91 337.0 187 88.8
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 9.2e-91 337.0 187 88.8
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 9.2e-91 337.0 186 88.2
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 9.2e-91 337.0 186 88.2
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 9.2e-91 337.0 183 89.1
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 9.2e-91 337.0 183 88.5
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 1.2e-90 336.7 183 88.5
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.2e-90 336.7 183 88.5
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 1.2e-90 336.7 183 88.0
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 1.2e-90 336.7 188 87.2
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.2e-90 336.7 187 87.7
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.2e-90 336.7 187 87.7
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 1.6e-90 336.3 186 88.2
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 1.6e-90 336.3 186 87.6
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 1.6e-90 336.3 187 88.8
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 2.1e-90 335.9 189 88.4
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 2.1e-90 335.9 187 87.7
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 2.7e-90 335.5 183 88.5
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 2.7e-90 335.5 183 88.5
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 2.7e-90 335.5 183 88.5
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 2.7e-90 335.5 183 88.5
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 3.5e-90 335.1 187 87.7
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 3.5e-90 335.1 187 87.7
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 4.6e-90 334.7 187 87.7
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 4.6e-90 334.7 186 87.6
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 4.6e-90 334.7 186 88.2
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 6.0e-90 334.3 183 88.5
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 6.0e-90 334.3 183 88.5
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 6.0e-90 334.3 187 87.2
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 6.0e-90 334.3 183 88.0
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 6.0e-90 334.3 183 88.0
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 7.8e-90 334.0 183 88.5
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 7.8e-90 334.0 183 88.5
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 1.0e-89 333.6 189 85.2
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 1.3e-89 333.2 186 87.1
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 1.3e-89 333.2 183 87.4
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 1.3e-89 333.2 187 87.2
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 1.3e-89 333.2 190 86.8
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 2.3e-89 332.4 183 89.1
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 3.0e-89 332.0 183 87.4
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 3.9e-89 331.6 183 86.9
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 3.9e-89 331.6 183 86.9
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 3.9e-89 331.6 183 86.9
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 3.9e-89 331.6 183 88.5
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 3.9e-89 331.6 191 83.8
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 3.9e-89 331.6 187 86.1
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 5.1e-89 331.3 187 85.6
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 5.1e-89 331.3 190 86.3
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 5.1e-89 331.3 190 86.3
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 6.6e-89 330.9 183 86.9
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 6.6e-89 330.9 183 86.9
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 6.6e-89 330.9 183 86.9
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 1.1e-88 330.1 183 86.9
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.1e-88 330.1 190 86.3
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.1e-88 330.1 190 86.3
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 1.1e-88 330.1 183 86.9
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 1.1e-88 330.1 191 85.3
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 1.5e-88 329.7 183 86.9
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 1.5e-88 329.7 183 86.9
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.5e-88 329.7 183 87.4
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 1.9e-88 329.3 187 84.5
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 2.5e-88 328.9 189 82.5
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 2.5e-88 328.9 183 86.9
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 2.5e-88 328.9 183 86.9
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 2.5e-88 328.9 183 86.9
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 2.5e-88 328.9 190 85.8
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 3.3e-88 328.6 211 78.7
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 3.3e-88 328.6 183 86.3
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 7.3e-88 327.4 187 85.0
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 7.3e-88 327.4 187 85.0
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 7.3e-88 327.4 187 84.5
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 3.6e-87 325.1 186 85.5
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 8.1e-87 323.9 189 82.5
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 8.1e-87 323.9 183 85.2
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 8.1e-87 323.9 183 85.8
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 1.8e-86 322.8 183 84.7
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 3.1e-86 322.0 189 82.5
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 4.0e-86 321.6 188 81.9
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 8.9e-86 320.5 183 83.6
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 1.5e-85 319.7 188 82.4
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 2.6e-85 318.9 182 84.6
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 3.8e-84 315.1 183 83.6
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 1.7e-81 306.2 248 64.5
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 2.3e-81 305.8 191 75.4
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 1.4e-78 296.6 183 79.8
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 8.9e-78 293.9 191 78.5
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 1.2e-77 293.5 192 75.5
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.3e-76 290.0 162 87.0
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 1.7e-73 279.6 162 82.7
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 2.1e-66 256.1 144 85.4
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.5e-66 255.4 189 71.4
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 3.9e-65 251.9 131 92.4
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 1.9e-64 249.6 139 88.5
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 9.6e-64 247.3 137 87.6
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 4.8e-63 245.0 143 83.9
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 4.6e-58 228.4 189 66.7
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 1.3e-57 226.9 129 82.2
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 3.0e-57 225.7 164 72.6
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 3.3e-56 222.2 137 79.6
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 3.7e-55 218.8 153 73.9
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 9.0e-54 214.2 189 52.4
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 6.7e-49 198.0 188 52.1
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 2.8e-47 192.6 167 64.1
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.4e-46 189.5 100 88.0
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.2e-45 187.2 115 74.8
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 5.0e-44 181.8 115 73.9
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 2.1e-42 176.4 126 65.9
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 4.6e-42 175.3 126 65.9
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 7.9e-42 174.5 96 81.2
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 5.1e-41 171.8 96 81.2
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.7e-41 171.4 96 80.2
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.7e-41 171.0 87 87.4
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.7e-41 171.0 87 87.4
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 4.3e-40 168.7 158 59.5
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.1e-38 164.1 157 58.0
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.1e-38 162.5 126 63.5
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 9.4e-35 151.0 79 84.8
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 2.6e-29 132.9 66 84.8
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 6.5e-28 128.3 70 90.0
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.1e-27 127.5 101 59.4
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.1e-27 127.5 101 59.4
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.1e-27 127.5 101 59.4
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.1e-27 127.5 101 59.4
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.1e-27 127.5 101 59.4
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.9e-27 126.7 101 59.4
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 7.2e-27 124.8 86 75.6
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 1.0e-25 120.9 86 74.4
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 2.6e-16 89.7 44 90.9
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 1.4e-14 84.0 44 88.6
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 2.0e-13 80.1 44 90.9


User provided reference genes

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