Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 2.5e-75 285.4 150 100.0
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 2.3e-52 209.1 110 99.1
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.9e-52 208.4 110 99.1
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 8.1e-50 200.7 110 97.3
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 4.0e-49 198.4 120 88.3
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 6.9e-49 197.6 110 92.7
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.2e-48 196.8 110 90.9
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 2.6e-48 195.7 115 88.7
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 3.4e-48 195.3 110 90.0
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 5.8e-48 194.5 117 85.5
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 5.8e-48 194.5 117 85.5
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 5.8e-48 194.5 117 85.5
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 5.8e-48 194.5 117 85.5
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 7.6e-48 194.1 110 90.0
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 9.9e-48 193.7 129 80.6
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.3e-47 193.4 110 89.1
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.3e-47 193.4 110 89.1
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 1.3e-47 193.4 110 89.1
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 2.2e-47 192.6 110 90.0
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 2.9e-47 192.2 110 88.2
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 2.9e-47 192.2 110 88.2
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 3.8e-47 191.8 109 89.9
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 1.1e-46 190.3 106 92.5
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 1.9e-46 189.5 110 87.3
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 1.9e-46 189.5 110 88.2
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 2.4e-46 189.1 115 89.6
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 3.2e-46 188.7 110 87.3
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 5.4e-46 188.0 106 90.6
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 9.3e-46 187.2 110 86.4
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 9.3e-46 187.2 110 86.4
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 9.3e-46 187.2 110 86.4
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 9.3e-46 187.2 110 88.2
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 1.2e-45 186.8 110 87.3
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 1.2e-45 186.8 117 85.5
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 1.6e-45 186.4 121 84.3
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 1.6e-45 186.4 111 88.3
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 1.6e-45 186.4 110 87.3
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 2.1e-45 186.0 110 88.2
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 2.7e-45 185.7 106 88.7
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 3.5e-45 185.3 110 86.4
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 4.6e-45 184.9 109 86.2
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 7.8e-45 184.1 113 84.1
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 1.0e-44 183.7 118 85.6
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 1.0e-44 183.7 110 86.4
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 1.3e-44 183.3 107 86.9
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 1.7e-44 183.0 110 87.3
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 3.9e-44 181.8 131 74.8
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 5.1e-44 181.4 110 80.9
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 5.1e-44 181.4 111 85.6
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 8.7e-44 180.6 109 83.5
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 8.7e-44 180.6 109 83.5
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 8.7e-44 180.6 109 83.5
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 1.1e-43 180.3 102 89.2
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 1.1e-43 180.3 110 81.8
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 1.1e-43 180.3 110 83.6
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 1.1e-43 180.3 110 81.8
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 1.5e-43 179.9 105 85.7
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 3.3e-43 178.7 102 89.2
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 4.3e-43 178.3 108 85.2
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 4.3e-43 178.3 108 86.1
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 4.3e-43 178.3 112 83.9
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 9.6e-43 177.2 109 81.7
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 1.6e-42 176.4 110 80.0
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 3.6e-42 175.3 113 81.4
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 3.6e-42 175.3 102 85.3
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 4.8e-42 174.9 112 82.1
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 4.8e-42 174.9 107 86.9
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 8.1e-42 174.1 110 82.7
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 8.1e-42 174.1 110 81.8
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 8.1e-42 174.1 110 82.7
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 8.1e-42 174.1 110 82.7
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 8.1e-42 174.1 110 81.8
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 8.1e-42 174.1 110 81.8
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 8.1e-42 174.1 110 82.7
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 8.1e-42 174.1 137 70.8
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 1.1e-41 173.7 110 81.8
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 1.1e-41 173.7 110 81.8
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 1.1e-41 173.7 110 81.8
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 1.1e-41 173.7 110 81.8
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 1.1e-41 173.7 110 82.7
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 1.8e-41 172.9 129 73.6
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 1.8e-41 172.9 142 71.8
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 2.4e-41 172.6 110 80.9
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 2.4e-41 172.6 110 80.9
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 2.4e-41 172.6 110 80.9
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 2.4e-41 172.6 105 81.0
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 3.1e-41 172.2 106 83.0
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 6.9e-41 171.0 110 80.0
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 6.9e-41 171.0 113 76.1
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 6.9e-41 171.0 109 86.2
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 9.0e-41 170.6 110 80.0
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 1.5e-40 169.9 110 80.9
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 2.0e-40 169.5 110 80.0
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 2.0e-40 169.5 111 80.2
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 2.0e-40 169.5 110 80.0
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 2.6e-40 169.1 117 77.8
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 3.4e-40 168.7 113 83.2
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 4.5e-40 168.3 110 78.2
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 7.6e-40 167.5 115 78.3
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 9.9e-40 167.2 113 76.1
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 2.2e-39 166.0 93 89.2
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 2.2e-39 166.0 96 88.5
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 2.2e-39 166.0 96 88.5
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 3.8e-39 165.2 117 76.1
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 4.9e-39 164.9 110 77.3
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 4.9e-39 164.9 100 84.0
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 5.4e-38 161.4 96 85.4
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 7.1e-38 161.0 104 77.9
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 6.0e-37 157.9 104 76.0
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 6.0e-37 157.9 104 76.0
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 1.3e-36 156.8 110 76.4
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 3.3e-35 152.1 101 72.3
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 4.3e-35 151.8 182 51.6
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 1.6e-34 149.8 104 73.1
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 2.8e-34 149.1 119 71.4
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.4e-33 146.7 135 62.2
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 9.0e-33 144.1 110 70.0
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 3.4e-32 142.1 97 70.1
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 1.7e-31 139.8 79 93.7
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 1.8e-28 129.8 118 65.3
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 6.7e-28 127.9 100 70.0
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 8.7e-28 127.5 74 86.5
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 8.7e-28 127.5 100 68.0
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 8.7e-28 127.5 97 64.9
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 3.4e-24 115.5 106 63.2
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 2.2e-23 112.8 94 63.8
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 6.0e-21 104.8 53 90.6
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 6.7e-20 101.3 53 86.8
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 1.6e-18 96.7 56 92.9
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 2.2e-18 96.3 78 62.8
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 2.2e-18 96.3 57 91.2
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 2.8e-18 95.9 58 87.9
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 2.8e-18 95.9 57 93.0
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 3.7e-18 95.5 52 82.7
QL12p013723 Quercus lobata HOM05D005002 ORTHO05D006016 8.2e-18 94.4 92 62.0
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 1.1e-17 94.0 102 54.9
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 4.1e-17 92.0 96 50.0
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 5.3e-17 91.7 61 77.0
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 9.0e-17 90.9 61 77.0
Duzib187G1493 Durio zibethinus HOM05D005002 ORTHO05D006016 2.6e-16 89.4 66 77.3
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 1.7e-15 86.7 77 59.7
CARHR239610 Cardamine hirsuta HOM05D005002 ORTHO05D006016 3.2e-14 82.4 57 84.2
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 4.2e-14 82.0 45 82.2
MBI15_g18374_MAGBIO Magnolia biondii HOM05D005002 ORTHO05D006016 2.1e-13 79.7 105 50.5
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 5.1e-12 75.1 110 38.2
Actinidia25736 Actinidia chinensis HOM05D005002 ORTHO05D006016 8.8e-12 74.3 88 51.1
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 5.7e-11 71.6 112 42.9
Lalb_Chr08g0233981 Lupinus albus HOM05D005002 ORTHO05D006016 5.9e-08 61.6 38 81.6
Nitab4.5_0000668g0030 Nicotiana tabacum HOM05D005002 ORTHO05D006016 5.9e-08 61.6 37 83.8
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 5.0e-07 58.5 55 58.2
SEGI_34318 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 5.0e-07 58.5 41 73.2
SEGI_02469 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 4.2e-06 55.5 35 82.9


User provided reference genes

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