Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031311 Camellia sinensis var. sinensis HOM05D003175 ORTHO05D003591 4.0e-47 191.0 94 100.0
CSS0031089 Camellia sinensis var. sinensis HOM05D003175 ORTHO05D003591 1.5e-38 162.5 81 98.8
CSS0001019 Camellia sinensis var. sinensis HOM05D003175 ORTHO05D003591 1.1e-36 156.4 80 95.0
CSS0037416 Camellia sinensis var. sinensis HOM05D003175 ORTHO05D003591 4.2e-36 154.5 80 95.0
CSS0022912 Camellia sinensis var. sinensis HOM05D003175 ORTHO05D003591 3.9e-34 147.9 89 85.4
Actinidia38453 Actinidia chinensis HOM05D003175 ORTHO05D003591 2.2e-29 132.1 71 87.3
Dinv42332 Davidia involucrata HOM05D003175 ORTHO05D003591 1.1e-28 129.8 81 82.7
Rhsim03G0087900 Rhododendron simsii HOM05D003175 ORTHO05D003591 9.3e-28 126.7 70 84.3
vmacro23436 Vaccinium macrocarpon HOM05D003175 ORTHO05D003591 2.3e-26 122.1 77 79.2
QL02p062322 Quercus lobata HOM05D003175 ORTHO05D003591 3.0e-26 121.7 79 72.2
Actinidia29908 Actinidia chinensis HOM05D003175 ORTHO05D003591 1.9e-25 119.0 78 76.9
Dinv36778 Davidia involucrata HOM05D003175 ORTHO05D003591 5.6e-25 117.5 81 75.3
vmacro06300 Vaccinium macrocarpon HOM05D003175 ORTHO05D003591 2.1e-24 115.5 74 75.7
TAR371G0179 Trochodendron aralioides HOM05D003175 ORTHO05D003591 6.2e-24 114.0 81 69.1
CiPaw.08G005200 Carya illinoinensis HOM05D003175 ORTHO05D003591 8.2e-24 113.6 76 71.1
Hma1.2p1_1838F.1_g304840 Hydrangea macrophylla HOM05D003175 ORTHO05D003591 8.2e-24 113.6 78 70.5
QL01p015391 Quercus lobata HOM05D003175 ORTHO05D003591 8.2e-24 113.6 69 73.9
DCAR_003521 Daucus carota HOM05D003175 ORTHO05D003591 1.4e-23 112.8 64 79.7
Haze_21391 Corylus avellana HOM05D003175 ORTHO05D003591 1.8e-23 112.5 73 72.6
Haze_04011 Corylus avellana HOM05D003175 ORTHO05D003591 2.4e-23 112.1 73 72.6
Prupe.7G207200 Prunus persica HOM05D003175 ORTHO05D003591 2.4e-23 112.1 71 70.4
THA.LOC104811748 Tarenaya hassleriana HOM05D003175 ORTHO05D003591 2.4e-23 112.1 66 75.8
Hma1.2p1_1453F.1_g284310 Hydrangea macrophylla HOM05D003175 ORTHO05D003591 3.1e-23 111.7 78 69.2
CARHR270680 Cardamine hirsuta HOM05D003175 ORTHO05D003591 5.3e-23 110.9 71 76.1
Aa31LG1G18310 Aethionema arabicum HOM05D003175 ORTHO05D003591 1.5e-22 109.4 78 67.9
TAR629G2636 Trochodendron aralioides HOM05D003175 ORTHO05D003591 1.5e-22 109.4 76 65.8
GSVIVG01015186001 Vitis vinifera HOM05D003175 ORTHO05D003591 1.5e-22 109.4 81 69.1
MD02G1081900 Malus domestica HOM05D003175 ORTHO05D003591 2.0e-22 109.0 67 73.1
Nn7g37004 Nelumbo nucifera HOM05D003175 ORTHO05D003591 2.0e-22 109.0 76 69.7
Carub.0008s1742 Capsella rubella HOM05D003175 ORTHO05D003591 2.6e-22 108.6 67 76.1
MD15G1209200 Malus domestica HOM05D003175 ORTHO05D003591 2.6e-22 108.6 67 73.1
RcHm_v2.0_Chr2g0093641 Rosa chinensis HOM05D003175 ORTHO05D003591 3.4e-22 108.2 66 74.2
THA.LOC104813493 Tarenaya hassleriana HOM05D003175 ORTHO05D003591 3.4e-22 108.2 64 76.6
Atru.chr8.2333 Acer truncatum HOM05D003175 ORTHO05D003591 4.5e-22 107.8 62 75.8
ClCG03G015450 Citrullus lanatus HOM05D003175 ORTHO05D003591 4.5e-22 107.8 70 70.0
DCAR_031336 Daucus carota HOM05D003175 ORTHO05D003591 7.6e-22 107.1 64 76.6
Gohir.D05G031900 Gossypium hirsutum HOM05D003175 ORTHO05D003591 1.3e-21 106.3 66 72.7
Gorai.009G032100 Gossypium raimondii HOM05D003175 ORTHO05D003591 1.3e-21 106.3 66 72.7
PGR102G2971 Punica granatum HOM05D003175 ORTHO05D003591 1.3e-21 106.3 70 65.7
Cfa006747 Carpinus fangiana HOM05D003175 ORTHO05D003591 1.7e-21 105.9 73 69.9
Duzib168G1627 Durio zibethinus HOM05D003175 ORTHO05D003591 2.2e-21 105.5 66 72.7
SGA_v2.0_scaffold40G15473 Striga asiatica HOM05D003175 ORTHO05D003591 4.9e-21 104.4 75 72.0
HPP92_004704 Vanilla planifolia HOM05D003175 ORTHO05D003591 4.9e-21 104.4 67 74.6
SGA_v2.0_scaffold337G49169 Striga asiatica HOM05D003175 ORTHO05D003591 6.5e-21 104.0 90 62.2
Duzib150G0820 Durio zibethinus HOM05D003175 ORTHO05D003591 8.4e-21 103.6 57 78.9
Oeu011490.1 Olea europaea HOM05D003175 ORTHO05D003591 8.4e-21 103.6 75 73.3
Potri.004G217400 Populus trichocarpa HOM05D003175 ORTHO05D003591 8.4e-21 103.6 79 62.0
Thecc.09G086900 Theobroma cacao HOM05D003175 ORTHO05D003591 8.4e-21 103.6 79 65.8
AT5G56940 Arabidopsis thaliana HOM05D003175 ORTHO05D003591 1.1e-20 103.2 69 71.0
Cpa.g.sc128.7 Carica papaya HOM05D003175 ORTHO05D003591 1.1e-20 103.2 79 69.6
ECA234G4558 Erigeron canadensis HOM05D003175 ORTHO05D003591 1.4e-20 102.8 66 69.7
Thhalv10014987m.g Eutrema salsugineum HOM05D003175 ORTHO05D003591 1.4e-20 102.8 72 69.4
Sp6g18640 Schrenkiella parvula HOM05D003175 ORTHO05D003591 1.4e-20 102.8 72 69.4
MSTRG.5776 Avicennia marina HOM05D003175 ORTHO05D003591 1.9e-20 102.4 79 65.8
Hma1.2p1_3088F.1_g332510 Hydrangea macrophylla HOM05D003175 ORTHO05D003591 1.9e-20 102.4 78 65.4
Phvul.009G231300 Phaseolus vulgaris HOM05D003175 ORTHO05D003591 1.9e-20 102.4 66 75.8
Sabra04G0148100 Salix brachista HOM05D003175 ORTHO05D003591 1.9e-20 102.4 55 80.0
Gohir.A10G064800 Gossypium hirsutum HOM05D003175 ORTHO05D003591 2.5e-20 102.1 76 65.8
FAN23G2612 Fragaria x ananassa HOM05D003175 ORTHO05D003591 3.2e-20 101.7 78 61.5
FAN26G0002 Fragaria x ananassa HOM05D003175 ORTHO05D003591 3.2e-20 101.7 78 61.5
Glyma.15G170800 Glycine max HOM05D003175 ORTHO05D003591 3.2e-20 101.7 58 79.3
HanXRQChr10g0319441 Helianthus annuus HOM05D003175 ORTHO05D003591 3.2e-20 101.7 56 78.6
SGA_v2.0_scaffold49G18150 Striga asiatica HOM05D003175 ORTHO05D003591 3.2e-20 101.7 58 82.8
VMungo0251G0584 Vigna mungo HOM05D003175 ORTHO05D003591 3.2e-20 101.7 66 75.8
AL8G32800 Arabidopsis lyrata HOM05D003175 ORTHO05D003591 4.2e-20 101.3 69 69.6
Glyma.09G064500 Glycine max HOM05D003175 ORTHO05D003591 4.2e-20 101.3 71 70.4
TWI09G0130 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 4.2e-20 101.3 66 68.2
Ah.03g147100 Amaranthus hybridus HOM05D003175 ORTHO05D003591 5.5e-20 100.9 66 72.7
A10p14260 Brassica napus HOM05D003175 ORTHO05D003591 5.5e-20 100.9 68 73.5
BraA10t43517Z Brassica rapa HOM05D003175 ORTHO05D003591 5.5e-20 100.9 68 73.5
COL.COLO4_18186 Corchorus olitorius HOM05D003175 ORTHO05D003591 5.5e-20 100.9 70 68.6
MELO3C015489.2 Cucumis melo HOM05D003175 ORTHO05D003591 5.5e-20 100.9 76 65.8
CsaV3_1G040590 Cucumis sativus L. HOM05D003175 ORTHO05D003591 7.1e-20 100.5 73 67.1
FvH4_1g07750 Fragaria vesca HOM05D003175 ORTHO05D003591 7.1e-20 100.5 78 60.3
FAN19G2985 Fragaria x ananassa HOM05D003175 ORTHO05D003591 7.1e-20 100.5 78 60.3
TWI73G0679 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 7.1e-20 100.5 66 66.7
Ah.14g083830 Amaranthus hybridus HOM05D003175 ORTHO05D003591 9.3e-20 100.1 79 64.6
Eucgr.C03473 Eucalyptus grandis HOM05D003175 ORTHO05D003591 9.3e-20 100.1 65 69.2
CANSAT11G2123 Cannabis sativa HOM05D003175 ORTHO05D003591 1.2e-19 99.8 79 60.8
Cc06_g11550 Coffea canephora HOM05D003175 ORTHO05D003591 1.2e-19 99.8 75 70.7
FAN26G2348 Fragaria x ananassa HOM05D003175 ORTHO05D003591 1.2e-19 99.8 78 60.3
Gorai.011G070400 Gossypium raimondii HOM05D003175 ORTHO05D003591 1.2e-19 99.8 74 66.2
Manes.01G198600 Manihot esculenta HOM05D003175 ORTHO05D003591 1.2e-19 99.8 72 68.1
Ciclev10013100m.g Citrus clementina HOM05D003175 ORTHO05D003591 1.6e-19 99.4 70 68.6
FAN28G0810 Fragaria x ananassa HOM05D003175 ORTHO05D003591 1.6e-19 99.4 78 60.3
Gohir.A05G030500 Gossypium hirsutum HOM05D003175 ORTHO05D003591 1.6e-19 99.4 76 64.5
Gohir.D10G066300 Gossypium hirsutum HOM05D003175 ORTHO05D003591 1.6e-19 99.4 76 64.5
Eucgr.C03471 Eucalyptus grandis HOM05D003175 ORTHO05D003591 2.1e-19 99.0 55 76.4
EL10Ac6g15408 Beta vulgaris HOM05D003175 ORTHO05D003591 2.7e-19 98.6 79 63.3
BcaB08g36038 Brassica carinata HOM05D003175 ORTHO05D003591 2.7e-19 98.6 71 69.0
HanXRQChr12g0354621 Helianthus annuus HOM05D003175 ORTHO05D003591 2.7e-19 98.6 56 75.0
Nitab4.5_0002593g0030 Nicotiana tabacum HOM05D003175 ORTHO05D003591 2.7e-19 98.6 74 71.6
AL52U10030 Arabidopsis lyrata HOM05D001215 ORTHO05D003591 3.5e-19 98.2 80 63.8
Lalb_Chr08g0232311 Lupinus albus HOM05D003175 ORTHO05D003591 3.5e-19 98.2 79 64.6
Nitab4.5_0001519g0020 Nicotiana tabacum HOM05D003175 ORTHO05D003591 3.5e-19 98.2 70 68.6
Sed0010998 Sechium edule HOM05D003175 ORTHO05D003591 3.5e-19 98.2 58 74.1
Lsat_1_v5_gn_5_142921 Lactuca sativa HOM05D003175 ORTHO05D003591 6.0e-19 97.4 68 66.2
Nitab4.5_0001586g0160 Nicotiana tabacum HOM05D003175 ORTHO05D003591 6.0e-19 97.4 70 67.1
Peaxi162Scf01425g00001 Petunia axillaris HOM05D003175 ORTHO05D003591 6.0e-19 97.4 73 64.4
Sed0014824 Sechium edule HOM05D003175 ORTHO05D003591 6.0e-19 97.4 70 67.1
Peaxi162Scf01604g00008 Petunia axillaris HOM05D003175 ORTHO05D003591 7.9e-19 97.1 54 77.8
TPR.G13431 Trifolium pratense HOM05D003175 ORTHO05D003591 7.9e-19 97.1 61 72.1
PSO017G4091 Papaver somniferum HOM05D003175 ORTHO05D003591 1.3e-18 96.3 65 67.7
VMungo0251G0230 Vigna mungo HOM05D003175 ORTHO05D003591 1.3e-18 96.3 66 72.7
AUR62003470 Chenopodium quinoa HOM05D003175 ORTHO05D003591 1.8e-18 95.9 81 65.4
Aqoxy7G02783 Aquilegia oxysepala HOM05D003175 ORTHO05D003591 2.3e-18 95.5 67 62.7
BcaC03g14195 Brassica carinata HOM05D003175 ORTHO05D003591 3.0e-18 95.1 73 64.4
A02p08860 Brassica napus HOM05D003175 ORTHO05D003591 3.0e-18 95.1 73 64.4
C02p14770 Brassica napus HOM05D003175 ORTHO05D003591 3.0e-18 95.1 73 64.4
BolC2t07606H Brassica oleracea HOM05D003175 ORTHO05D003591 3.0e-18 95.1 73 64.4
BraA02t05955Z Brassica rapa HOM05D003175 ORTHO05D003591 3.0e-18 95.1 73 64.4
MBI16_g10338_MAGBIO Magnolia biondii HOM05D003175 ORTHO05D003591 3.9e-18 94.7 77 61.0
AUR62017777 Chenopodium quinoa HOM05D003175 ORTHO05D003591 5.1e-18 94.4 80 65.0
Lj6g0021196 Lotus japonicus HOM05D003175 ORTHO05D003591 6.7e-18 94.0 67 68.7
Sopen07g004590 Solanum pennellii HOM05D003175 ORTHO05D003591 6.7e-18 94.0 72 63.9
PGSC0003DMG400022985 Solanum tuberosum HOM05D003175 ORTHO05D003591 6.7e-18 94.0 72 65.3
arahy.Tifrunner.gnm1.ann1.24WPAI Arachis hypogaea HOM05D003175 ORTHO05D003591 1.1e-17 93.2 73 67.1
arahy.Tifrunner.gnm1.ann1.TVN50Z Arachis hypogaea HOM05D003175 ORTHO05D003591 1.1e-17 93.2 73 67.1
PSO170G4980 Papaver somniferum HOM05D003175 ORTHO05D003591 1.5e-17 92.8 65 63.1
Sc18g0002200 Simmondsia chinensis HOM05D003175 ORTHO05D003591 1.9e-17 92.4 81 60.5
Solyc07g008660.3 Solanum lycopersicum HOM05D003175 ORTHO05D003591 1.9e-17 92.4 72 63.9
Os09g0498100 Oryza sativa ssp. japonica HOM05D003175 ORTHO05D003591 2.5e-17 92.0 51 82.4
SEGI_17182 Sequoiadendron giganteum HOM05D003175 ORTHO05D003591 2.5e-17 92.0 49 81.6
CDE06G2360 Ceratophyllum demersum HOM05D003175 ORTHO05D003591 3.3e-17 91.7 73 61.6
Medtr2g039750 Medicago truncatula HOM05D003175 ORTHO05D003591 5.7e-17 90.9 56 73.2
Hund04301 Selenicereus undatus HOM05D003175 ORTHO05D003591 5.7e-17 90.9 71 64.8
TPR.G10463 Trifolium pratense HOM05D003175 ORTHO05D003591 5.7e-17 90.9 49 83.7
Nitab4.5_0004056g0030 Nicotiana tabacum HOM05D003175 ORTHO05D003591 7.4e-17 90.5 70 64.3
Medtr5g014070 Medicago truncatula HOM05D003175 ORTHO05D003591 9.7e-17 90.1 58 70.7
Os08g0517900 Oryza sativa ssp. japonica HOM05D003175 ORTHO05D003591 9.7e-17 90.1 70 62.9
CDE02G0210 Ceratophyllum demersum HOM05D003175 ORTHO05D003591 1.3e-16 89.7 54 74.1
PSO063G6037 Papaver somniferum HOM05D003175 ORTHO05D003591 1.3e-16 89.7 66 60.6
Duzib187G0793 Durio zibethinus HOM05D003175 ORTHO05D003591 1.6e-16 89.4 66 63.6
Psat1g140000 Pisum sativum HOM05D003175 ORTHO05D003591 1.6e-16 89.4 65 66.2
ATR0724G037 Amborella trichopoda HOM05D003175 ORTHO05D003591 2.2e-16 89.0 66 62.1
Migut.J00455 Erythranthe guttata HOM05D003175 ORTHO05D003591 3.7e-16 88.2 79 60.8
Nn8g40845 Nelumbo nucifera HOM05D003175 ORTHO05D003591 4.8e-16 87.8 76 59.2
PSO384G0167 Papaver somniferum HOM05D003175 ORTHO05D003591 4.8e-16 87.8 48 77.1
PSO384G0269 Papaver somniferum HOM05D003175 ORTHO05D003591 4.8e-16 87.8 48 77.1
PSO063G1429 Papaver somniferum HOM05D003175 ORTHO05D003591 8.2e-16 87.0 66 59.1
Zm00001eb317180 Zea mays HOM05D003175 ORTHO05D003591 8.2e-16 87.0 68 63.2
PSO384G5082 Papaver somniferum HOM05D003175 ORTHO05D003591 2.4e-15 85.5 48 75.0
ATR0626G012 Amborella trichopoda HOM05D003175 ORTHO05D003591 3.1e-15 85.1 71 59.2
BcaC01g06456 Brassica carinata HOM05D003175 ORTHO05D003591 2.0e-14 82.4 72 59.7
BcaNung05244 Brassica carinata HOM05D003175 ORTHO05D003591 2.0e-14 82.4 72 59.7
C03p15250 Brassica napus HOM05D003175 ORTHO05D003591 2.0e-14 82.4 72 59.7
BolC9t57700H Brassica oleracea HOM05D003175 ORTHO05D003591 1.3e-13 79.7 46 78.3
Manes.05G131300 Manihot esculenta HOM05D003175 ORTHO05D003591 1.1e-12 76.6 48 70.8
TWI53G2020 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 1.0e-10 70.1 78 47.4
THA.LOC104804346 Tarenaya hassleriana HOM05D003175 ORTHO05D003591 2.3e-10 68.9 51 60.8
SEGI_09210 Sequoiadendron giganteum HOM05D003175 ORTHO05D003591 2.5e-09 65.5 64 53.1
AT4G34620 Arabidopsis thaliana HOM05D003175 ORTHO05D003591 1.4e-07 59.7 52 51.9
BcaB01g04434 Brassica carinata HOM05D003175 ORTHO05D003591 2.4e-07 58.9 82 47.6
Carub.0007s0566 Capsella rubella HOM05D003175 ORTHO05D003591 5.3e-07 57.8 52 51.9
Aa31LG2G15900 Aethionema arabicum HOM05D003175 ORTHO05D003591 9.1e-07 57.0 52 55.8
AL7G16580 Arabidopsis lyrata HOM05D003175 ORTHO05D003591 1.2e-06 56.6 52 50.0
BraA01t00374Z Brassica rapa HOM05D003175 ORTHO05D003591 2.0e-06 55.8 52 50.0
Thhalv10026606m.g Eutrema salsugineum HOM05D003175 ORTHO05D003591 2.0e-06 55.8 52 50.0
Sp7g32410 Schrenkiella parvula HOM05D003175 ORTHO05D003591 2.0e-06 55.8 52 50.0
BcaNung00682 Brassica carinata HOM05D003175 ORTHO05D003591 2.6e-06 55.5 52 50.0
BcaNung04917 Brassica carinata HOM05D003175 ORTHO05D003591 2.6e-06 55.5 52 48.1
BcaNung04920 Brassica carinata HOM05D003175 ORTHO05D003591 2.6e-06 55.5 52 48.1
C01p04180 Brassica napus HOM05D003175 ORTHO05D003591 2.6e-06 55.5 52 50.0
BolC1t00406H Brassica oleracea HOM05D003175 ORTHO05D003591 2.6e-06 55.5 52 50.0
A01p03870 Brassica napus HOM05D003175 ORTHO05D003591 4.5e-06 54.7 52 50.0


User provided reference genes

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