Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 5.0e-108 394.4 197 100.0
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 2.0e-88 329.3 196 84.2
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 1.0e-84 317.0 198 80.8
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 8.6e-84 313.9 198 78.8
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 2.7e-77 292.4 198 73.7
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 1.0e-76 290.4 198 73.2
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 1.0e-76 290.4 198 73.2
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 5.6e-75 284.6 198 71.2
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 9.6e-75 283.9 200 71.5
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 1.6e-74 283.1 199 71.4
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 2.8e-74 282.3 199 69.3
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 8.1e-74 280.8 199 69.3
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.5e-72 276.6 200 70.5
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.5e-72 276.6 200 70.5
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.5e-72 276.6 200 70.5
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.5e-72 276.6 200 70.5
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 3.4e-72 275.4 196 72.4
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 7.6e-72 274.2 199 66.3
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 7.6e-72 274.2 198 69.2
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 1.3e-71 273.5 198 71.7
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 1.7e-71 273.1 199 69.3
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 2.9e-71 272.3 199 66.8
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 2.9e-71 272.3 196 71.9
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 8.4e-71 270.8 198 65.7
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.1e-70 270.4 198 69.2
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.1e-70 270.4 202 65.8
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 1.9e-70 269.6 199 66.8
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 4.2e-70 268.5 198 67.7
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 4.2e-70 268.5 198 68.7
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 5.4e-70 268.1 202 65.3
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 7.1e-70 267.7 198 68.2
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 7.1e-70 267.7 199 66.3
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 3.5e-69 265.4 199 65.8
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 3.5e-69 265.4 197 66.0
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 4.6e-69 265.0 196 67.3
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 4.6e-69 265.0 199 66.3
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 6.0e-69 264.6 196 68.9
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 7.8e-69 264.2 198 66.7
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.7e-68 263.1 196 66.3
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 1.7e-68 263.1 198 65.7
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.3e-68 262.7 199 64.8
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 2.3e-68 262.7 198 63.6
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 3.0e-68 262.3 197 66.0
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 3.0e-68 262.3 199 64.8
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 3.9e-68 261.9 197 66.0
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 3.9e-68 261.9 198 67.2
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 3.9e-68 261.9 199 64.8
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 5.1e-68 261.5 197 65.5
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 6.6e-68 261.2 198 64.1
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 6.6e-68 261.2 199 64.8
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 1.5e-67 260.0 197 64.0
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 1.5e-67 260.0 199 64.3
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 3.3e-67 258.8 199 64.3
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 3.3e-67 258.8 197 65.5
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 7.3e-67 257.7 198 66.7
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 9.6e-67 257.3 198 63.6
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 9.6e-67 257.3 199 64.8
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 9.6e-67 257.3 198 63.6
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 1.3e-66 256.9 199 63.3
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 1.6e-66 256.5 196 63.3
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 1.6e-66 256.5 198 63.6
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 2.8e-66 255.8 198 65.2
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 3.6e-66 255.4 197 62.4
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 3.6e-66 255.4 198 63.1
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 4.8e-66 255.0 198 61.6
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 4.8e-66 255.0 198 65.2
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 6.2e-66 254.6 198 63.1
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 2.4e-65 252.7 198 63.6
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 5.3e-65 251.5 197 62.9
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 5.8e-64 248.1 198 59.6
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 7.6e-64 247.7 198 60.1
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 9.9e-64 247.3 198 63.6
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 4.9e-63 245.0 197 61.4
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 1.4e-62 243.4 198 61.1
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 3.2e-62 242.3 196 60.2
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 6.0e-61 238.0 201 60.2
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 7.8e-61 237.7 203 60.1
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 5.1e-60 235.0 198 58.6
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 8.7e-60 234.2 198 59.1
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 4.3e-59 231.9 196 59.2
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 9.6e-59 230.7 195 56.4
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 1.3e-58 230.3 196 58.7
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 1.1e-57 227.3 198 58.1
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 1.1e-57 227.3 200 57.0
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 6.9e-57 224.6 201 56.2
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.2e-56 223.8 199 56.3
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.5e-56 223.4 201 55.2
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 2.0e-56 223.0 198 55.6
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 1.7e-55 219.9 200 55.0
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 1.7e-55 219.9 199 55.8
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 1.7e-55 219.9 200 54.0
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 2.2e-55 219.5 200 55.0
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 3.8e-55 218.8 200 54.5
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 4.9e-55 218.4 198 54.0
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 8.4e-55 217.6 201 53.7
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 8.4e-55 217.6 198 53.5
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 1.4e-54 216.9 199 54.3
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 1.4e-54 216.9 202 54.0
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 1.9e-54 216.5 200 52.5
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 5.4e-54 214.9 185 56.2
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 1.0e-52 210.7 199 52.3
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.8e-52 209.9 192 52.1
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 5.1e-52 208.4 199 52.3
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 5.1e-52 208.4 200 54.5
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 1.1e-51 207.2 197 50.3
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 1.5e-51 206.8 176 59.1
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.9e-51 206.5 198 53.5
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 3.3e-51 205.7 195 50.8
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 5.6e-51 204.9 204 53.9
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 5.6e-51 204.9 204 53.9
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 7.4e-51 204.5 202 54.5
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 9.6e-51 204.1 197 50.8
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 9.6e-51 204.1 200 51.0
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 2.1e-50 203.0 201 54.2
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 2.8e-50 202.6 199 54.3
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.8e-50 202.6 202 53.0
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 2.8e-50 202.6 201 54.7
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.8e-49 199.9 198 51.0
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 2.4e-49 199.5 130 79.2
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.5e-48 196.8 170 57.1
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 2.6e-48 196.1 168 56.0
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 2.6e-48 196.1 201 50.2
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 4.9e-47 191.8 201 48.8
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 8.4e-47 191.0 199 50.3
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 1.1e-46 190.7 194 51.0
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 7.4e-43 177.9 183 53.0
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 2.6e-40 169.5 198 44.9
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.2e-39 166.4 197 44.7
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 8.4e-39 164.5 192 42.2
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 1.4e-38 163.7 199 46.2
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 3.5e-37 159.1 195 43.1
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.1e-35 154.1 200 42.5
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.5e-35 153.7 206 41.3
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 3.3e-35 152.5 195 43.1
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.4e-33 146.4 198 43.4
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 9.0e-33 144.4 202 40.1
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 3.4e-32 142.5 98 74.5
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 2.5e-27 126.3 97 63.9
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 9.4e-22 107.8 124 43.5
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 1.0e-20 104.4 97 51.5
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.3e-20 103.2 197 34.0
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 1.3e-18 97.4 90 46.7
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 6.5e-15 85.1 133 38.3
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 3.2e-14 82.8 193 32.6
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 6.7e-12 75.1 192 29.7
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 9.7e-11 71.2 194 27.8


User provided reference genes

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