Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031266 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 1.6e-146 522.7 259 100.0
Actinidia16265 Actinidia chinensis HOM05D006328 ORTHO05D007721 6.8e-97 357.8 260 73.1
Dinv13426 Davidia involucrata HOM05D006328 ORTHO05D007721 8.1e-90 334.3 244 72.1
Oeu029372.1 Olea europaea HOM05D006328 ORTHO05D007721 6.9e-89 331.3 260 68.1
Cc01_g01550 Coffea canephora HOM05D006328 ORTHO05D007721 4.9e-87 325.1 266 65.8
Hma1.2p1_0062F.1_g034170 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 6.4e-87 324.7 185 84.3
Manes.03G088400 Manihot esculenta HOM05D006328 ORTHO05D007721 1.1e-86 323.9 258 66.3
TWI60G0846 Tripterygium wilfordii HOM05D006328 ORTHO05D007721 1.1e-86 323.9 254 66.5
HanXRQChr07g0196761 Helianthus annuus HOM05D006328 ORTHO05D007721 1.9e-86 323.2 249 68.3
Lj1A460T3 Lonicera japonica HOM05D006328 ORTHO05D007721 1.9e-86 323.2 260 66.2
ECA238G4721 Erigeron canadensis HOM05D006328 ORTHO05D007721 4.2e-86 322.0 233 69.1
QL01p007982 Quercus lobata HOM05D006328 ORTHO05D007721 5.4e-86 321.6 262 66.8
Nitab4.5_0000775g0140 Nicotiana tabacum HOM05D006328 ORTHO05D007721 9.3e-86 320.9 265 65.7
COL.COLO4_34990 Corchorus olitorius HOM05D001240 ORTHO05D002450 1.2e-85 320.5 188 84.0
Nitab4.5_0011368g0030 Nicotiana tabacum HOM05D006328 ORTHO05D007721 1.6e-85 320.1 266 66.9
Ciclev10016391m.g Citrus clementina HOM05D006328 ORTHO05D007721 1.3e-84 317.0 192 81.2
BraA09t36060Z Brassica rapa HOM05D006328 ORTHO05D007721 2.3e-84 316.2 255 64.3
THA.LOC104811061 Tarenaya hassleriana HOM05D006328 ORTHO05D007721 2.3e-84 316.2 194 79.4
TAR633G0950 Trochodendron aralioides HOM05D006328 ORTHO05D007721 2.3e-84 316.2 265 67.2
MSTRG.18860 Avicennia marina HOM05D006328 ORTHO05D007721 3.0e-84 315.8 184 82.1
Peaxi162Scf00100g00716 Petunia axillaris HOM05D006328 ORTHO05D007721 3.0e-84 315.8 264 67.0
Thecc.09G213100 Theobroma cacao HOM05D006328 ORTHO05D007721 3.0e-84 315.8 222 74.3
Atru.chr3.2259 Acer truncatum HOM05D006328 ORTHO05D007721 3.9e-84 315.5 192 80.2
Atru.chr3.2265 Acer truncatum HOM05D006328 ORTHO05D007721 3.9e-84 315.5 192 80.2
CiPaw.13G173100 Carya illinoinensis HOM05D006328 ORTHO05D007721 3.9e-84 315.5 187 81.8
Lsat_1_v5_gn_2_101560 Lactuca sativa HOM05D006328 ORTHO05D007721 3.9e-84 315.5 243 66.7
PGSC0003DMG400032183 Solanum tuberosum HOM05D006328 ORTHO05D007721 3.9e-84 315.5 265 64.9
CAN.G158.4 Capsicum annuum HOM05D006328 ORTHO05D007721 5.1e-84 315.1 265 63.8
GSVIVG01025405001 Vitis vinifera HOM05D006328 ORTHO05D007721 5.1e-84 315.1 192 79.7
EL10Ac4g10350 Beta vulgaris HOM05D006328 ORTHO05D007721 6.6e-84 314.7 263 61.6
AL5G20530 Arabidopsis lyrata HOM05D006328 ORTHO05D007721 8.7e-84 314.3 250 65.6
TAR633G1956 Trochodendron aralioides HOM05D006328 ORTHO05D007721 8.7e-84 314.3 265 66.8
Carub.0003s3500 Capsella rubella HOM05D006328 ORTHO05D007721 1.5e-83 313.5 231 68.8
SGA_v2.0_scaffold6G03437 Striga asiatica HOM05D006328 ORTHO05D007721 1.5e-83 313.5 187 81.3
Cpa.g.sc119.81 Carica papaya HOM05D006328 ORTHO05D007721 1.9e-83 313.2 240 67.5
FAN16G1952 Fragaria x ananassa HOM05D006328 ORTHO05D007721 1.9e-83 313.2 264 65.2
Sopen01g002030 Solanum pennellii HOM05D006328 ORTHO05D007721 1.9e-83 313.2 261 65.9
A06p39560 Brassica napus HOM05D006328 ORTHO05D007721 2.5e-83 312.8 191 80.6
BraA06t26871Z Brassica rapa HOM05D006328 ORTHO05D007721 2.5e-83 312.8 191 80.6
Sp2g18300 Schrenkiella parvula HOM05D006328 ORTHO05D007721 2.5e-83 312.8 242 66.5
Nn7g35935 Nelumbo nucifera HOM05D006328 ORTHO05D007721 3.3e-83 312.4 263 65.8
Solyc01g006020.4 Solanum lycopersicum HOM05D006328 ORTHO05D007721 3.3e-83 312.4 265 64.5
Eucgr.B03625 Eucalyptus grandis HOM05D006328 ORTHO05D007721 4.3e-83 312.0 187 81.8
A09p04230 Brassica napus HOM05D006328 ORTHO05D007721 5.6e-83 311.6 255 64.3
C07p38710 Brassica napus HOM05D006328 ORTHO05D007721 5.6e-83 311.6 191 80.1
ClCG08G005770 Citrullus lanatus HOM05D006328 ORTHO05D007721 7.3e-83 311.2 268 63.4
MD08G1205200 Malus domestica HOM05D006328 ORTHO05D007721 7.3e-83 311.2 200 78.5
Rhsim13G0229700 Rhododendron simsii HOM05D006328 ORTHO05D007721 9.6e-83 310.8 299 58.9
CARHR153570 Cardamine hirsuta HOM05D006328 ORTHO05D007721 1.3e-82 310.5 239 66.5
Migut.D02532 Erythranthe guttata HOM05D006328 ORTHO05D007721 1.3e-82 310.5 272 62.9
PGR102G1639 Punica granatum HOM05D006328 ORTHO05D007721 1.3e-82 310.5 264 64.4
BcaC04g23807 Brassica carinata HOM05D006328 ORTHO05D007721 1.6e-82 310.1 252 64.3
C09p04470 Brassica napus HOM05D006328 ORTHO05D007721 1.6e-82 310.1 252 64.3
BolC9t53377H Brassica oleracea HOM05D006328 ORTHO05D007721 1.6e-82 310.1 252 64.3
FvH4_3g44830 Fragaria vesca HOM05D006328 ORTHO05D007721 2.1e-82 309.7 262 64.9
Gohir.D13G217500 Gossypium hirsutum HOM05D006328 ORTHO05D007721 2.1e-82 309.7 188 80.3
Aa31LG4G12590 Aethionema arabicum HOM05D006328 ORTHO05D007721 2.8e-82 309.3 188 80.3
Gorai.013G248000 Gossypium raimondii HOM05D006328 ORTHO05D007721 2.8e-82 309.3 188 80.3
MELO3C015648.2 Cucumis melo HOM05D006328 ORTHO05D007721 3.6e-82 308.9 269 63.2
FAN11G1794 Fragaria x ananassa HOM05D006328 ORTHO05D007721 3.6e-82 308.9 262 64.9
ClCG03G013990 Citrullus lanatus HOM05D006328 ORTHO05D007721 4.8e-82 308.5 266 63.5
BcaB04g19533 Brassica carinata HOM05D006328 ORTHO05D007721 6.2e-82 308.1 243 66.3
Potri.003G216700 Populus trichocarpa HOM05D006328 ORTHO05D007721 6.2e-82 308.1 265 63.8
Gohir.A13G213700 Gossypium hirsutum HOM05D006328 ORTHO05D007721 1.1e-81 307.4 188 79.8
RcHm_v2.0_Chr5g0081531 Rosa chinensis HOM05D006328 ORTHO05D007721 1.4e-81 307.0 191 79.6
Actinidia06854 Actinidia chinensis HOM05D001240 ORTHO05D002450 1.8e-81 306.6 206 74.8
Haze_22985 Corylus avellana HOM05D006328 ORTHO05D007721 2.4e-81 306.2 317 56.8
Prupe.1G537200 Prunus persica HOM05D006328 ORTHO05D007721 3.1e-81 305.8 192 79.7
AT3G32930 Arabidopsis thaliana HOM05D006328 ORTHO05D007721 4.0e-81 305.4 232 67.7
CsaV3_1G042230 Cucumis sativus L. HOM05D006328 ORTHO05D007721 4.0e-81 305.4 269 62.5
FAN25G2838 Fragaria x ananassa HOM05D006328 ORTHO05D007721 4.0e-81 305.4 264 64.4
MBI13_g29633_MAGBIO Magnolia biondii HOM05D006328 ORTHO05D007721 5.3e-81 305.1 221 69.7
Thhalv10004835m.g Eutrema salsugineum HOM05D006328 ORTHO05D007721 6.9e-81 304.7 224 69.6
ATR0598G038 Amborella trichopoda HOM05D006328 ORTHO05D007721 9.0e-81 304.3 234 67.1
DCAR_001992 Daucus carota HOM05D006328 ORTHO05D007721 9.0e-81 304.3 188 78.2
FAN21G0799 Fragaria x ananassa HOM05D006328 ORTHO05D007721 9.0e-81 304.3 272 62.1
unitig_746.g26630 Utricularia gibba HOM05D006328 ORTHO05D007721 2.6e-80 302.8 181 79.6
Glyma.08G315600 Glycine max HOM05D006328 ORTHO05D007721 3.4e-80 302.4 244 66.0
Hund07572 Selenicereus undatus HOM05D006328 ORTHO05D007721 3.4e-80 302.4 254 65.0
SalBow6G6014 Salvia bowleyana HOM05D006328 ORTHO05D007721 4.5e-80 302.0 184 79.3
Sed0015335 Sechium edule HOM05D006328 ORTHO05D007721 7.6e-80 301.2 192 78.1
Phvul.006G042800 Phaseolus vulgaris HOM05D006328 ORTHO05D007721 9.9e-80 300.8 245 67.3
CANSAT11G2432 Cannabis sativa HOM05D006328 ORTHO05D007721 2.9e-79 299.3 271 60.1
AUR62019196 Chenopodium quinoa HOM05D006328 ORTHO05D007721 3.8e-79 298.9 255 62.0
Lj6g0000665 Lotus japonicus HOM05D006328 ORTHO05D007721 1.4e-78 297.0 252 66.3
arahy.Tifrunner.gnm1.ann1.6HD85A Arachis hypogaea HOM05D006328 ORTHO05D007721 5.4e-78 295.0 230 68.3
Glyma.18G097300 Glycine max HOM05D006328 ORTHO05D007721 7.1e-78 294.7 244 64.8
Sabra03G0161800 Salix brachista HOM05D006328 ORTHO05D007721 2.1e-77 293.1 282 59.2
TPR.G19330 Trifolium pratense HOM05D006328 ORTHO05D007721 7.9e-77 291.2 192 75.5
Lalb_Chr10g0091951 Lupinus albus HOM05D006328 ORTHO05D007721 1.0e-76 290.8 225 67.1
HPP92_009650 Vanilla planifolia HOM05D006328 ORTHO05D007721 1.8e-76 290.0 221 67.4
Manes.15G105600 Manihot esculenta HOM05D006328 ORTHO05D007721 3.9e-76 288.9 260 62.7
PSO339G5084 Papaver somniferum HOM05D006328 ORTHO05D007721 1.5e-75 287.0 204 69.1
Medtr3g083310 Medicago truncatula HOM05D006328 ORTHO05D007721 1.9e-75 286.6 262 58.8
AUR62000025 Chenopodium quinoa HOM05D006328 ORTHO05D007721 1.1e-73 280.8 173 78.6
Duzib150G1371 Durio zibethinus HOM05D006328 ORTHO05D007721 1.1e-73 280.8 238 64.3
PSO384G1580 Papaver somniferum HOM05D006328 ORTHO05D007721 3.1e-73 279.3 204 67.2
Aqoxy1G00065 Aquilegia oxysepala HOM05D006328 ORTHO05D007721 5.8e-72 275.0 256 58.2
CDE06G2606 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 8.4e-71 271.2 222 63.1
Ah.06g193050 Amaranthus hybridus HOM05D001193 ORTHO05D007721 7.1e-70 268.1 249 56.6
vmacro04215 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 7.9e-69 264.6 184 73.9
Hma1.2p1_0062F.1_g034180 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 6.7e-68 261.5 139 87.8
Os07g0608100 Oryza sativa ssp. japonica HOM05D006328 ORTHO05D007721 5.6e-67 258.5 189 67.7
Zm00001eb108920 Zea mays HOM05D006328 ORTHO05D007721 5.8e-64 248.4 191 66.0
VMungo0540G0449 Vigna mungo HOM05D006328 ORTHO05D007721 5.9e-56 221.9 122 86.1
Psat5g101200 Pisum sativum HOM05D006328 ORTHO05D007721 3.0e-52 209.5 155 68.4
Mapoly0048s0070 Marchantia polymorpha HOM05D006328 ORTHO05D007721 3.7e-50 202.6 198 51.5
AagrBONN_evm.TU.Sc2ySwM_344.1649 Anthoceros agrestis HOM05D006328 ORTHO05D007721 1.4e-49 200.7 186 56.5
vmacro22566 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 1.4e-46 190.7 121 78.5
Sc06g0004300 Simmondsia chinensis HOM05D006328 ORTHO05D007721 3.6e-45 186.0 165 63.6
Pp3c11_23310 Physcomitrium patens HOM05D006328 ORTHO05D007721 7.9e-45 184.9 197 50.8
CBR_g50072 Chara braunii HOM05D006328 ORTHO05D007721 2.1e-37 160.2 163 50.9
CSS0049555 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 1.0e-36 157.9 105 78.1
CDE07G1106 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 1.1e-35 154.5 183 47.0
CSS0028438 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 4.4e-35 152.5 103 77.7
Duzib168G1709 Durio zibethinus HOM05D006328 ORTHO05D007721 8.5e-31 138.3 182 46.7
Nn2g15765 Nelumbo nucifera HOM05D006328 ORTHO05D007721 3.2e-30 136.3 71 88.7
Dinv15017 Davidia involucrata HOM05D006328 ORTHO05D007721 2.2e-26 123.6 136 53.7
HanXRQChr04g0113321 Helianthus annuus HOM05D006328 ORTHO05D007721 1.8e-25 120.6 108 61.1
Nn2g15764 Nelumbo nucifera HOM05D006328 ORTHO05D007721 6.1e-21 105.5 84 70.2
unitig_899.g15354 Utricularia gibba HOM05D006328 ORTHO05D007721 8.3e-18 95.1 182 36.8
HanXRQChr17g0560491 Helianthus annuus HOM05D006328 ORTHO05D007721 1.6e-16 90.9 53 79.2
VMungo0540G1370 Vigna mungo HOM05D006328 ORTHO05D007721 3.3e-14 83.2 120 46.7
Hma1.2p1_0062F.1_g034160 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 5.5e-14 82.4 116 50.0
arahy.Tifrunner.gnm1.ann1.VB18ZC Arachis hypogaea HOM05D006328 ORTHO05D007721 1.6e-13 80.9 97 51.5
arahy.Tifrunner.gnm1.ann1.C5G03I Arachis hypogaea HOM05D006328 ORTHO05D007721 8.0e-13 78.6 71 62.0
Zm00001eb327220 Zea mays HOM05D006328 ORTHO05D007721 1.5e-11 74.3 70 54.3
Dinv08842 Davidia involucrata HOM05D006328 ORTHO05D007721 1.4e-09 67.8 54 64.8
Sabra06G0010000 Salix brachista HOM05D006328 ORTHO05D007721 1.4e-09 67.8 119 41.2
arahy.Tifrunner.gnm1.ann1.RQ0K0U Arachis hypogaea HOM05D002734 ORTHO05D003035 3.5e-08 63.2 46 67.4


User provided reference genes

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