Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031166 Camellia sinensis var. sinensis HOM05D001179 ORTHO05D043304 1.4e-33 145.6 68 100.0
CSS0033570 Camellia sinensis var. sinensis HOM05D001179 ORTHO05D043304 1.4e-33 145.6 68 100.0
Aqoxy2G00698 Aquilegia oxysepala HOM05D001179 ORTHO05D003685 5.9e-08 60.5 27 92.6
EL10Ac2g02625 Beta vulgaris HOM05D001179 ORTHO05D003685 5.9e-08 60.5 27 92.6
Ca_16879_v3 Cicer arietinum L. HOM05D001179 ORTHO05D003685 5.9e-08 60.5 27 92.6
Dinv21838 Davidia involucrata HOM05D001179 ORTHO05D003685 5.9e-08 60.5 27 92.6
ECA233G6173 Erigeron canadensis HOM05D001179 ORTHO05D003685 5.9e-08 60.5 27 92.6
Eucgr.G03132 Eucalyptus grandis HOM05D001179 ORTHO05D003685 5.9e-08 60.5 27 92.6
Glyma.04G221300 Glycine max HOM05D001179 ORTHO05D003685 5.9e-08 60.5 27 92.6
Glyma.06G144500 Glycine max HOM05D001179 ORTHO05D003685 5.9e-08 60.5 27 92.6
Gohir.A10G178700 Gossypium hirsutum HOM05D001179 ORTHO05D003685 5.9e-08 60.5 27 92.6
Gohir.D10G185400 Gossypium hirsutum HOM05D001179 ORTHO05D003685 5.9e-08 60.5 27 92.6
Gorai.011G207900 Gossypium raimondii HOM05D001179 ORTHO05D003685 5.9e-08 60.5 27 92.6
HanXRQChr14g0460121 Helianthus annuus HOM05D001179 ORTHO05D003685 5.9e-08 60.5 27 92.6
Lsat_1_v5_gn_1_9140 Lactuca sativa HOM05D001179 ORTHO05D003685 5.9e-08 60.5 27 92.6
Lsat_1_v5_gn_8_13581 Lactuca sativa HOM05D001179 ORTHO05D003685 5.9e-08 60.5 27 92.6
MD01G1164700 Malus domestica HOM05D001179 ORTHO05D003685 5.9e-08 60.5 27 92.6
MD07G1232200 Malus domestica HOM05D001179 ORTHO05D003685 5.9e-08 60.5 27 92.6
PSO339G1613 Papaver somniferum HOM05D001179 ORTHO05D003685 5.9e-08 60.5 27 92.6
PSO384G4860 Papaver somniferum HOM05D001179 ORTHO05D003685 5.9e-08 60.5 27 92.6
Prupe.2G262400 Prunus persica HOM05D001179 ORTHO05D003685 5.9e-08 60.5 27 92.6
TPR.G16129 Trifolium pratense HOM05D001179 ORTHO05D003685 5.9e-08 60.5 27 92.6
Aa31LG3G3910 Aethionema arabicum HOM05D001179 ORTHO05D003685 7.7e-08 60.1 27 88.9
BcaB04g21165 Brassica carinata HOM05D001179 ORTHO05D003685 7.7e-08 60.1 27 88.9
Thhalv10021449m.g Eutrema salsugineum HOM05D001179 ORTHO05D003685 7.7e-08 60.1 27 88.9
Gohir.A05G278100 Gossypium hirsutum HOM05D001179 ORTHO05D003685 7.7e-08 60.1 27 88.9
Gohir.D05G279800 Gossypium hirsutum HOM05D001179 ORTHO05D003685 7.7e-08 60.1 27 88.9
Gorai.009G293300 Gossypium raimondii HOM05D001179 ORTHO05D003685 7.7e-08 60.1 27 88.9
HanXRQChr08g0221521 Helianthus annuus HOM05D001179 ORTHO05D003685 7.7e-08 60.1 27 88.9
Thecc.10G182900 Theobroma cacao HOM05D001179 ORTHO05D003685 7.7e-08 60.1 27 92.6
vmacro06882 Vaccinium macrocarpon HOM05D001179 ORTHO05D003685 7.7e-08 60.1 27 92.6
Actinidia31620 Actinidia chinensis HOM05D001179 ORTHO05D003685 1.0e-07 59.7 27 92.6
Ah.12g064220 Amaranthus hybridus HOM05D001179 ORTHO05D003685 1.0e-07 59.7 27 92.6
THA.LOC104826834 Tarenaya hassleriana HOM05D001179 ORTHO05D003685 1.0e-07 59.7 27 88.9
GSVIVG01032675001 Vitis vinifera HOM05D001179 ORTHO05D003685 1.0e-07 59.7 27 88.9
CANSAT56G3903 Cannabis sativa HOM05D001179 ORTHO05D003685 1.3e-07 59.3 27 88.9
Haze_24459 Corylus avellana HOM05D001179 ORTHO05D003685 1.3e-07 59.3 27 88.9
ECA238G4669 Erigeron canadensis HOM05D001179 ORTHO05D003685 1.3e-07 59.3 27 88.9
Peaxi162Scf00739g00213 Petunia axillaris HOM05D001179 ORTHO05D003685 1.3e-07 59.3 27 88.9
Prupe.6G042300 Prunus persica HOM05D001179 ORTHO05D003685 1.3e-07 59.3 27 88.9
Rhsim03G0151400 Rhododendron simsii HOM05D001179 ORTHO05D003685 1.3e-07 59.3 27 92.6
RcHm_v2.0_Chr1g0371971 Rosa chinensis HOM05D001179 ORTHO05D003685 1.3e-07 59.3 27 88.9
TWI09G0424 Tripterygium wilfordii HOM05D001179 ORTHO05D003685 1.3e-07 59.3 27 92.6
CANSAT56G1791 Cannabis sativa HOM05D001179 ORTHO05D003685 1.7e-07 58.9 27 85.2
Cc02_g05460 Coffea canephora HOM05D001179 ORTHO05D003685 1.7e-07 58.9 27 85.2
DCAR_019807 Daucus carota HOM05D001179 ORTHO05D003685 1.7e-07 58.9 27 88.9
Duzib106G1949 Durio zibethinus HOM05D001179 ORTHO05D003685 1.7e-07 58.9 27 88.9
Migut.F00601 Erythranthe guttata HOM05D001179 ORTHO05D003685 1.7e-07 58.9 27 88.9
FvH4_7g25730 Fragaria vesca HOM05D001179 ORTHO05D003685 1.7e-07 58.9 27 88.9
FAN01G2567 Fragaria x ananassa HOM05D001179 ORTHO05D003685 1.7e-07 58.9 27 88.9
Lj1g0015160 Lotus japonicus HOM05D001179 ORTHO05D003685 1.7e-07 58.9 27 88.9
PGR044G0674 Punica granatum HOM05D001179 ORTHO05D003685 1.7e-07 58.9 27 88.9
PGR044G2534 Punica granatum HOM05D001179 ORTHO05D003685 1.7e-07 58.9 27 88.9
Sp3g09250 Schrenkiella parvula HOM05D001179 ORTHO05D003685 1.7e-07 58.9 27 85.2
Actinidia07798 Actinidia chinensis HOM05D001179 ORTHO05D003685 2.3e-07 58.5 33 75.8
AL3G22460 Arabidopsis lyrata HOM05D001179 ORTHO05D003685 2.3e-07 58.5 27 85.2
AT3G10920 Arabidopsis thaliana HOM05D001179 ORTHO05D003685 2.3e-07 58.5 27 85.2
arahy.Tifrunner.gnm1.ann1.PB70UC Arachis hypogaea HOM05D001179 ORTHO05D003685 2.3e-07 58.5 27 88.9
arahy.Tifrunner.gnm1.ann1.R3C42M Arachis hypogaea HOM05D001179 ORTHO05D003685 2.3e-07 58.5 27 88.9
BcaC09g48138 Brassica carinata HOM05D001179 ORTHO05D003685 2.3e-07 58.5 27 85.2
BolC1t05344H Brassica oleracea HOM05D001179 ORTHO05D003685 2.3e-07 58.5 27 85.2
BraA01t04214Z Brassica rapa HOM05D001179 ORTHO05D003685 2.3e-07 58.5 27 85.2
CARHR085500 Cardamine hirsuta HOM05D001179 ORTHO05D003685 2.3e-07 58.5 27 85.2
Cpa.g.sc2.301 Carica papaya HOM05D001179 ORTHO05D003685 2.3e-07 58.5 26 92.3
Duzib114G0343 Durio zibethinus HOM05D001179 ORTHO05D003685 2.3e-07 58.5 27 88.9
Eucgr.J00124 Eucalyptus grandis HOM05D001179 ORTHO05D003685 2.3e-07 58.5 30 80.0
Medtr3g094250 Medicago truncatula HOM05D001179 ORTHO05D003685 2.3e-07 58.5 26 92.3
Nitab4.5_0000375g0200 Nicotiana tabacum HOM05D001179 ORTHO05D003685 2.3e-07 58.5 27 88.9
Nitab4.5_0001743g0010 Nicotiana tabacum HOM05D001179 ORTHO05D003685 2.3e-07 58.5 27 88.9
Nitab4.5_0002279g0090 Nicotiana tabacum HOM05D001179 ORTHO05D003685 2.3e-07 58.5 27 88.9
Nitab4.5_0004599g0060 Nicotiana tabacum HOM05D001179 ORTHO05D003685 2.3e-07 58.5 27 88.9
Psat5g067840 Pisum sativum HOM05D001179 ORTHO05D003685 2.3e-07 58.5 27 88.9
Hund15827 Selenicereus undatus HOM05D001179 ORTHO05D003685 2.3e-07 58.5 27 88.9
BcaC05g29410 Brassica carinata HOM05D001179 ORTHO05D003685 2.9e-07 58.2 26 88.5
A05p38320 Brassica napus HOM05D001179 ORTHO05D003685 2.9e-07 58.2 26 88.5
C05p57140 Brassica napus HOM05D001179 ORTHO05D003685 2.9e-07 58.2 26 88.5
BolC5t34377H Brassica oleracea HOM05D001179 ORTHO05D003685 2.9e-07 58.2 26 88.5
BraA05t22623Z Brassica rapa HOM05D001179 ORTHO05D003685 2.9e-07 58.2 26 88.5
Carub.0003s1019 Capsella rubella HOM05D001179 ORTHO05D003685 2.9e-07 58.2 27 81.5
Lj8C56G4 Lonicera japonica HOM05D001179 ORTHO05D003685 2.9e-07 58.2 27 88.9
Peaxi162Scf00167g01325 Petunia axillaris HOM05D001179 ORTHO05D003685 2.9e-07 58.2 27 88.9
Phvul.009G141600 Phaseolus vulgaris HOM05D001179 ORTHO05D003685 2.9e-07 58.2 27 85.2
TAR623G0689 Trochodendron aralioides HOM05D001179 ORTHO05D003685 2.9e-07 58.2 27 88.9
VMungo1309G2082 Vigna mungo HOM05D001179 ORTHO05D003685 2.9e-07 58.2 27 85.2
MSTRG.27266 Avicennia marina HOM05D001179 ORTHO05D003685 3.8e-07 57.8 28 82.1
Lalb_Chr11g0067941 Lupinus albus HOM05D001179 ORTHO05D003685 3.8e-07 57.8 27 85.2
TWI53G1486 Tripterygium wilfordii HOM05D001179 ORTHO05D003685 3.8e-07 57.8 27 85.2
CAN.G203.48 Capsicum annuum HOM05D001179 ORTHO05D003685 5.0e-07 57.4 27 85.2
AUR62030627 Chenopodium quinoa HOM05D001179 ORTHO05D003685 5.0e-07 57.4 27 85.2
DCAR_010472 Daucus carota HOM05D001179 ORTHO05D003685 5.0e-07 57.4 27 85.2
Manes.07G140500 Manihot esculenta HOM05D001179 ORTHO05D003685 5.0e-07 57.4 27 88.9
PSO017G6218 Papaver somniferum HOM05D001179 ORTHO05D003685 5.0e-07 57.4 27 85.2
PSO170G0286 Papaver somniferum HOM05D001179 ORTHO05D003685 5.0e-07 57.4 27 85.2
MSTRG.8897 Avicennia marina HOM05D001179 ORTHO05D003685 6.6e-07 57.0 27 85.2
Cfa001218 Carpinus fangiana HOM05D001179 ORTHO05D003685 6.6e-07 57.0 27 85.2
Haze_17344 Corylus avellana HOM05D001179 ORTHO05D003685 6.6e-07 57.0 27 85.2
Lalb_Chr08g0239041 Lupinus albus HOM05D001179 ORTHO05D003685 6.6e-07 57.0 26 88.5
Potri.013G092600 Populus trichocarpa HOM05D001179 ORTHO05D003685 6.6e-07 57.0 27 85.2
Sabra13G0072300 Salix brachista HOM05D001179 ORTHO05D003685 6.6e-07 57.0 27 85.2
Sc10g0002960 Simmondsia chinensis HOM05D001179 ORTHO05D003685 6.6e-07 57.0 27 85.2
BcaB06g25656 Brassica carinata HOM05D001179 ORTHO05D003685 8.6e-07 56.6 27 81.5
BcaB06g25661 Brassica carinata HOM05D001179 ORTHO05D003685 8.6e-07 56.6 27 81.5
QL08p064627 Quercus lobata HOM05D001179 ORTHO05D003685 8.6e-07 56.6 27 85.2
Sed0008431 Sechium edule HOM05D001179 ORTHO05D003685 8.6e-07 56.6 27 85.2
SGA_v2.0_scaffold247G44849 Striga asiatica HOM05D001179 ORTHO05D003685 8.6e-07 56.6 34 67.6
HPP92_002074 Vanilla planifolia HOM05D001179 ORTHO05D003685 8.6e-07 56.6 26 88.5
HPP92_002085 Vanilla planifolia HOM05D001179 ORTHO05D003685 8.6e-07 56.6 26 88.5
MSTRG.8372 Avicennia marina HOM05D001179 ORTHO05D003685 1.1e-06 56.2 26 88.5
Oeu044161.2 Olea europaea HOM05D001179 ORTHO05D003685 1.1e-06 56.2 27 81.5
RcHm_v2.0_Chr5g0072741 Rosa chinensis HOM05D001179 ORTHO05D003685 1.1e-06 56.2 27 88.9
Solyc06g049080.3 Solanum lycopersicum HOM05D001179 ORTHO05D003685 1.1e-06 56.2 26 84.6
Sopen06g015450 Solanum pennellii HOM05D001179 ORTHO05D003685 1.1e-06 56.2 26 84.6
PGSC0003DMG400016647 Solanum tuberosum HOM05D001179 ORTHO05D003685 1.1e-06 56.2 26 84.6
CANSAT54G3050 Cannabis sativa HOM05D001179 ORTHO05D003685 1.5e-06 55.8 27 81.5
CiPaw.01G305300 Carya illinoinensis HOM05D001179 ORTHO05D003685 1.5e-06 55.8 30 76.7
PSO339G6355 Papaver somniferum HOM05D001179 ORTHO05D003685 1.5e-06 55.8 27 81.5
RcHm_v2.0_Chr5g0072711 Rosa chinensis HOM05D001179 ORTHO05D003685 1.5e-06 55.8 27 85.2
Zm00001eb285090 Zea mays HOM05D001179 ORTHO05D003685 1.5e-06 55.8 28 82.1
Zm00001eb347200 Zea mays HOM05D001179 ORTHO05D003685 1.5e-06 55.8 28 82.1
ClCG03G000100 Citrullus lanatus HOM05D001179 ORTHO05D003685 1.9e-06 55.5 29 75.9
Oeu036535.1 Olea europaea HOM05D001179 ORTHO05D003685 1.9e-06 55.5 27 81.5
Potri.019G057300 Populus trichocarpa HOM05D001179 ORTHO05D003685 1.9e-06 55.5 27 81.5
PGR142G2939 Punica granatum HOM05D001179 ORTHO05D003685 1.9e-06 55.5 27 81.5
COL.COLO4_19443 Corchorus olitorius HOM05D001179 ORTHO05D003685 2.5e-06 55.1 26 84.6
Lsat_1_v5_gn_3_61900 Lactuca sativa HOM05D001179 ORTHO05D003685 3.3e-06 54.7 26 80.8
MBI15_g08969_MAGBIO Magnolia biondii HOM05D001179 ORTHO05D003685 3.3e-06 54.7 27 77.8
QL01p025028 Quercus lobata HOM05D001179 ORTHO05D003685 3.3e-06 54.7 27 81.5
Ciclev10032324m.g Citrus clementina HOM05D001179 ORTHO05D003685 4.2e-06 54.3 27 77.8
CsaV3_1G004740 Cucumis sativus L. HOM05D001179 ORTHO05D003685 4.2e-06 54.3 29 72.4
Lsat_1_v5_gn_3_110340 Lactuca sativa HOM05D001179 ORTHO05D003685 4.2e-06 54.3 35 65.7
Os05g0323900 Oryza sativa ssp. japonica HOM05D001179 ORTHO05D003685 4.2e-06 54.3 26 84.6
GSVIVG01024575001 Vitis vinifera HOM05D001179 ORTHO05D003685 4.2e-06 54.3 27 81.5
Lsat_1_v5_gn_1_73681 Lactuca sativa HOM05D001179 ORTHO05D003685 7.2e-06 53.5 26 84.6
unitig_736.g22963 Utricularia gibba HOM05D001179 ORTHO05D003685 7.2e-06 53.5 27 74.1
Cfa011821 Carpinus fangiana HOM05D001179 ORTHO05D003685 9.5e-06 53.1 27 77.8
PSO832G1696 Papaver somniferum HOM05D001179 ORTHO05D003685 9.5e-06 53.1 27 77.8


User provided reference genes

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