Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 4.8e-101 371.3 208 100.0
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 5.2e-71 271.6 208 76.4
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 1.1e-65 253.8 207 70.5
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 2.1e-64 249.6 208 71.6
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 3.3e-57 225.7 200 66.5
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 2.8e-56 222.6 183 67.8
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 6.8e-55 218.0 207 64.3
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.2e-54 217.2 206 65.0
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 1.7e-50 203.4 211 59.7
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 3.9e-50 202.2 163 69.9
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 9.5e-49 197.6 210 61.0
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 1.2e-48 197.2 206 59.2
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 2.8e-48 196.1 160 70.6
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 3.6e-48 195.7 166 68.7
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 4.7e-48 195.3 166 62.7
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 8.0e-48 194.5 174 65.5
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 8.0e-48 194.5 214 59.3
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 5.2e-47 191.8 173 67.1
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 1.2e-46 190.7 183 60.7
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 2.0e-46 189.9 207 56.5
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 2.6e-46 189.5 210 58.1
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 2.6e-46 189.5 215 60.5
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 4.4e-46 188.7 211 57.3
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.7e-45 186.8 208 57.2
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.7e-45 186.8 210 57.1
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 2.2e-45 186.4 211 57.3
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 2.9e-45 186.0 204 58.8
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 3.7e-45 185.7 199 59.8
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 4.9e-45 185.3 201 58.7
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 8.3e-45 184.5 201 59.7
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 8.3e-45 184.5 210 57.1
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 8.3e-45 184.5 211 55.9
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 1.4e-44 183.7 209 54.1
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 2.4e-44 183.0 212 57.1
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 2.4e-44 183.0 206 58.3
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 3.2e-44 182.6 221 54.8
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.2e-44 182.6 182 61.5
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 4.1e-44 182.2 211 55.5
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 5.4e-44 181.8 206 58.7
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 9.2e-44 181.0 209 50.7
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 1.2e-43 180.6 205 53.7
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.2e-43 180.6 209 56.5
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.2e-43 180.6 209 56.5
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 1.2e-43 180.6 207 57.5
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 2.7e-43 179.5 206 52.9
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 3.5e-43 179.1 209 56.0
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 6.0e-43 178.3 209 57.4
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 1.3e-42 177.2 208 53.4
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 1.3e-42 177.2 164 62.8
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.3e-42 177.2 209 58.4
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 2.3e-42 176.4 173 61.8
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 3.9e-42 175.6 199 54.8
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 3.9e-42 175.6 162 61.7
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 5.1e-42 175.3 163 63.8
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 5.1e-42 175.3 163 63.8
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 5.1e-42 175.3 207 56.5
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 6.6e-42 174.9 162 61.7
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 1.9e-41 173.3 200 48.5
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 2.5e-41 172.9 150 67.3
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 5.6e-41 171.8 202 50.5
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 7.3e-41 171.4 222 52.3
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 1.2e-40 170.6 171 57.3
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 1.6e-40 170.2 164 64.0
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 1.6e-40 170.2 164 64.0
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 2.1e-40 169.9 173 57.2
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 2.8e-40 169.5 149 65.1
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 4.7e-40 168.7 212 54.7
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 4.7e-40 168.7 148 69.6
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 6.2e-40 168.3 148 66.2
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 6.2e-40 168.3 191 56.5
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 6.8e-39 164.9 164 59.1
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 6.8e-39 164.9 220 55.5
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 5.8e-38 161.8 243 46.9
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 9.9e-38 161.0 165 57.0
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 1.7e-37 160.2 206 53.9
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 6.4e-37 158.3 221 53.8
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 1.9e-36 156.8 105 68.6
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 1.9e-36 156.8 208 52.4
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 1.6e-35 153.7 109 68.8
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 4.6e-35 152.1 195 54.9
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 1.7e-34 150.2 165 59.4
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 1.7e-34 150.2 103 73.8
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 4.7e-32 142.1 285 41.4
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 2.9e-29 132.9 99 67.7
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 4.9e-29 132.1 224 41.1
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 1.9e-28 130.2 167 52.1
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 2.1e-27 126.7 94 66.0
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 2.7e-27 126.3 170 55.9
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 3.0e-26 122.9 91 68.1
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 1.5e-25 120.6 140 64.3
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 4.3e-25 119.0 74 77.0
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 8.1e-24 114.8 131 58.0
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 5.3e-23 112.1 73 74.0
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 5.3e-23 112.1 156 55.1
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 5.8e-22 108.6 203 37.4
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 3.8e-21 105.9 110 51.8
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 3.8e-21 105.9 110 51.8
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 6.4e-21 105.1 141 45.4
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 8.4e-21 104.8 114 61.4
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 3.2e-20 102.8 111 52.3
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 3.2e-20 102.8 110 50.9
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 5.4e-20 102.1 110 50.9
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 5.4e-20 102.1 87 58.6
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 1.2e-19 100.9 148 40.5
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 1.2e-19 100.9 87 57.5
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.6e-19 100.5 205 36.6
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 2.1e-19 100.1 87 54.0
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 2.7e-19 99.8 111 48.6
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 3.5e-19 99.4 211 37.4
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 6.0e-19 98.6 110 50.9
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 7.8e-19 98.2 110 49.1
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.0e-18 97.8 87 55.2
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 1.3e-18 97.4 87 56.3
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 2.3e-18 96.7 87 56.3
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 3.0e-18 96.3 87 54.0
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 5.1e-18 95.5 60 75.0
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 5.1e-18 95.5 85 55.3
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 5.1e-18 95.5 111 50.5
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 8.7e-18 94.7 110 47.3
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 8.7e-18 94.7 110 46.4
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 2.5e-17 93.2 85 54.1
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 2.5e-17 93.2 85 54.1
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 2.5e-17 93.2 87 50.6
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 3.3e-17 92.8 87 50.6
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 3.3e-17 92.8 87 51.7
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 5.6e-17 92.0 111 48.6
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 5.6e-17 92.0 88 54.5
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 5.6e-17 92.0 108 48.1
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 7.3e-17 91.7 89 59.6
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 7.3e-17 91.7 107 47.7
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 9.6e-17 91.3 179 36.3
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 1.6e-16 90.5 183 37.7
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 2.1e-16 90.1 121 53.7
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 2.8e-16 89.7 86 52.3
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 2.8e-16 89.7 90 48.9
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 3.6e-16 89.4 86 54.7
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 3.6e-16 89.4 86 54.7
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 4.8e-16 89.0 86 51.2
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 4.8e-16 89.0 86 51.2
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 4.8e-16 89.0 86 51.2
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 6.2e-16 88.6 87 49.4
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 8.1e-16 88.2 85 49.4
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 1.1e-15 87.8 86 51.2
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 1.1e-15 87.8 86 51.2
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.1e-15 87.8 90 46.7
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 1.1e-15 87.8 85 51.8
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 1.4e-15 87.4 87 51.7
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 2.4e-15 86.7 91 53.8
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 4.0e-15 85.9 85 48.2
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 4.0e-15 85.9 110 46.4
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 1.2e-14 84.3 85 47.1
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 2.2e-13 80.1 110 42.7
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 3.8e-13 79.3 76 52.6
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 3.8e-13 79.3 110 41.8
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 7.9e-11 71.6 87 43.7
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 3.0e-10 69.7 99 55.6
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 6.7e-10 68.6 85 37.6
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 1.1e-09 67.8 99 54.5
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 2.1e-08 63.5 136 38.2
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 6.2e-08 62.0 65 50.8
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 1.8e-07 60.5 72 44.4
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 3.1e-07 59.7 63 49.2
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 4.5e-06 55.8 52 53.8
Lsat_1_v5_gn_5_182360 Lactuca sativa HOM05D004087 ORTHO05D004787 5.8e-06 55.5 66 60.6


User provided reference genes

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