Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.6e-106 388.3 197 100.0
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.2e-103 379.0 197 97.5
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.5e-101 371.3 197 95.4
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.7e-85 318.9 196 82.7
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 2.9e-79 298.9 191 77.0
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 2.1e-77 292.7 191 75.9
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 5.1e-76 288.1 190 73.7
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.5e-75 285.8 194 73.2
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 3.3e-75 285.4 187 74.9
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 3.4e-72 275.4 189 69.3
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 6.4e-71 271.2 185 69.7
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 1.4e-70 270.0 186 69.9
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 2.7e-69 265.8 185 72.4
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 3.5e-69 265.4 188 66.5
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 4.6e-69 265.0 190 68.9
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 6.0e-69 264.6 191 67.5
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 1.3e-68 263.5 191 66.0
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 1.3e-68 263.5 192 64.6
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 5.1e-68 261.5 194 64.9
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 1.1e-67 260.4 197 65.0
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.1e-67 260.4 195 63.1
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.5e-67 260.0 191 64.9
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 1.9e-67 259.6 190 67.9
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 2.5e-67 259.2 195 64.1
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 5.6e-67 258.1 191 64.9
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 7.3e-67 257.7 188 65.4
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.6e-66 256.5 187 65.2
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 6.2e-66 254.6 189 64.0
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 8.1e-66 254.2 194 64.4
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 1.1e-65 253.8 185 67.0
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.1e-65 253.8 193 63.7
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 1.8e-65 253.1 193 63.7
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 2.4e-65 252.7 190 66.8
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 3.1e-65 252.3 192 63.5
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 5.3e-65 251.5 190 63.2
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 6.9e-65 251.1 193 63.7
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 6.9e-65 251.1 194 63.4
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 6.9e-65 251.1 194 63.9
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.2e-64 250.4 193 62.2
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 1.5e-64 250.0 192 63.5
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 2.0e-64 249.6 193 63.2
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 3.4e-64 248.8 196 63.3
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.4e-64 248.8 189 64.0
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 5.8e-64 248.1 193 60.6
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 5.8e-64 248.1 191 63.4
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 7.6e-64 247.7 193 61.7
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 7.6e-64 247.7 191 62.3
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 9.9e-64 247.3 193 60.6
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 9.9e-64 247.3 188 63.8
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 9.9e-64 247.3 194 62.4
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 3.8e-63 245.4 187 63.6
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 3.8e-63 245.4 194 61.9
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 4.9e-63 245.0 195 63.6
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 8.4e-63 244.2 194 63.4
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 8.4e-63 244.2 190 63.7
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 1.1e-62 243.8 194 58.8
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.4e-62 243.4 193 62.2
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 2.4e-62 242.7 194 63.4
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.2e-62 242.3 195 61.5
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 3.2e-62 242.3 194 62.4
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.2e-62 241.9 192 59.9
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.6e-61 240.0 195 61.0
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 1.6e-61 240.0 191 61.8
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.1e-61 239.6 190 59.5
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 2.1e-61 239.6 193 61.1
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 2.7e-61 239.2 193 59.1
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 2.7e-61 239.2 193 60.6
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 4.6e-61 238.4 239 51.0
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 6.0e-61 238.0 194 56.7
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 1.0e-60 237.3 193 59.1
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.0e-60 237.3 194 59.8
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 1.0e-60 237.3 194 61.3
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 1.0e-60 237.3 192 59.9
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 1.7e-60 236.5 191 61.3
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 2.3e-60 236.1 187 63.6
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 3.9e-60 235.3 193 59.6
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 6.6e-60 234.6 189 61.4
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 6.6e-60 234.6 195 59.0
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 1.5e-59 233.4 193 56.0
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 1.5e-59 233.4 191 60.7
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 2.5e-59 232.6 192 59.4
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 3.3e-59 232.3 192 58.3
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 7.3e-59 231.1 193 56.0
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.6e-58 229.9 189 56.6
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 2.8e-58 229.2 194 58.8
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 6.9e-57 224.6 190 57.4
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 9.0e-57 224.2 193 56.0
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.2e-56 223.8 194 55.7
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.0e-56 223.0 193 58.5
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 2.6e-56 222.6 187 57.8
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 2.6e-56 222.6 193 58.5
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.4e-56 222.2 190 55.8
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.4e-56 222.2 194 58.8
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 4.5e-56 221.9 188 56.9
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 5.8e-56 221.5 187 58.3
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 5.8e-56 221.5 193 58.0
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 7.6e-56 221.1 188 57.4
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 7.6e-56 221.1 194 57.2
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 1.3e-55 220.3 170 61.2
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.7e-55 219.9 194 56.7
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 2.2e-55 219.5 187 57.2
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 4.9e-55 218.4 145 69.7
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 1.1e-54 217.2 187 57.2
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 2.4e-54 216.1 196 54.6
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 3.2e-54 215.7 195 55.4
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 5.4e-54 214.9 192 54.2
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 5.4e-54 214.9 191 58.1
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 9.3e-54 214.2 192 54.2
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 9.3e-54 214.2 189 55.6
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 1.6e-53 213.4 193 56.0
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 2.7e-53 212.6 181 58.6
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 2.7e-53 212.6 193 56.5
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 3.5e-53 212.2 187 56.7
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 3.5e-53 212.2 188 56.4
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 7.9e-53 211.1 179 57.5
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 7.9e-53 211.1 188 55.9
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 2.3e-52 209.5 191 52.9
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 2.3e-52 209.5 164 62.2
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 2.3e-52 209.5 187 55.6
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 5.1e-52 208.4 175 60.0
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 8.7e-52 207.6 191 51.8
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 8.7e-52 207.6 196 56.1
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.9e-51 206.5 197 56.9
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 3.3e-51 205.7 192 52.1
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 7.4e-51 204.5 193 50.3
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 9.6e-51 204.1 193 48.2
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 3.7e-50 202.2 193 47.7
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 3.7e-50 202.2 194 50.0
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 6.2e-50 201.4 188 52.7
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.8e-49 199.9 194 50.0
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.4e-49 199.5 194 51.0
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 5.3e-49 198.4 192 52.6
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 1.5e-48 196.8 193 47.2
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 2.0e-48 196.4 193 47.2
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 3.4e-48 195.7 192 52.1
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 3.4e-48 195.7 174 58.0
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 8.4e-47 191.0 140 62.1
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.1e-46 190.7 165 60.6
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.9e-46 189.9 160 57.5
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.5e-46 188.3 188 48.4
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 1.6e-45 186.8 193 49.7
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 6.0e-45 184.9 187 47.1
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 1.3e-44 183.7 188 50.0
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 6.7e-44 181.4 191 47.6
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 1.9e-43 179.9 165 55.2
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 3.7e-42 175.6 193 43.5
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 3.7e-42 175.6 124 66.9
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.7e-42 175.6 159 54.7
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 8.2e-42 174.5 165 53.9
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.1e-41 172.6 193 46.1
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 4.0e-41 172.2 193 45.6
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.7e-39 166.8 180 49.4
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 2.9e-39 166.0 145 53.1
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 1.1e-38 164.1 194 48.5
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 4.2e-38 162.2 193 43.5
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 2.3e-36 156.4 126 57.9
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.1e-35 154.1 158 52.5
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 2.5e-35 152.9 188 42.0
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 9.7e-35 151.0 188 42.0
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 2.8e-34 149.4 193 42.5
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.7e-34 149.1 198 42.9
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 5.9e-32 141.7 128 53.1
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 2.3e-28 129.8 109 57.8
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.4e-25 119.8 189 38.6
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.7e-23 113.6 194 41.2
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.2e-22 109.4 192 35.4
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 1.2e-21 107.5 114 49.1
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 2.8e-18 96.3 84 56.0
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.5e-16 90.5 165 33.3
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.5e-16 89.4 102 49.0
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 4.5e-16 89.0 192 32.3
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 1.3e-15 87.4 177 33.3
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 2.2e-15 86.7 94 43.6
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 1.1e-14 84.3 206 27.2
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 8.0e-13 78.2 78 47.4
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 1.4e-12 77.4 161 35.4
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 8.5e-07 58.2 95 38.9
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 2.5e-06 56.6 81 42.0
Pp3c23_8370 Physcomitrium patens HOM05D003838 ORTHO05D004444 2.5e-06 56.6 162 29.6


User provided reference genes

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