Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030827 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 3.5e-307 1057.4 503 100.0
CSS0013347 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.3e-229 799.7 521 77.9
Rhsim01G0191500 Rhododendron simsii HOM05D002268 ORTHO05D006937 1.9e-172 609.8 447 69.8
GSVIVG01025274001 Vitis vinifera HOM05D002268 ORTHO05D006937 1.0e-168 597.4 442 69.0
vmacro19340 Vaccinium macrocarpon HOM05D002268 ORTHO05D006937 2.7e-166 589.3 447 66.7
CsaV3_4G024220 Cucumis sativus L. HOM05D002268 ORTHO05D006937 4.8e-163 578.6 444 66.7
COL.COLO4_24897 Corchorus olitorius HOM05D002268 ORTHO05D006937 1.4e-162 577.0 443 65.9
Atru.chr3.2733 Acer truncatum HOM05D002268 ORTHO05D006937 1.8e-162 576.6 445 67.0
QL01p004788 Quercus lobata HOM05D002268 ORTHO05D006937 1.8e-162 576.6 441 66.9
CiPaw.14G119300 Carya illinoinensis HOM05D002268 ORTHO05D006937 6.9e-162 574.7 444 66.2
Nitab4.5_0006994g0060 Nicotiana tabacum HOM05D002268 ORTHO05D006937 6.9e-162 574.7 434 67.1
arahy.Tifrunner.gnm1.ann1.6XYC84 Arachis hypogaea HOM05D002268 ORTHO05D006937 9.0e-162 574.3 435 67.6
MELO3C014598.2 Cucumis melo HOM05D002268 ORTHO05D006937 1.2e-161 573.9 444 66.0
TWI60G0297 Tripterygium wilfordii HOM05D002268 ORTHO05D006937 5.9e-161 571.6 444 65.5
Sed0017829 Sechium edule HOM05D002268 ORTHO05D006937 7.6e-161 571.2 442 66.3
Ca_11284_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 1.3e-160 570.5 441 66.9
Ca_30227_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 1.3e-160 570.5 441 66.9
Duzib168G2040 Durio zibethinus HOM05D002268 ORTHO05D006937 1.3e-160 570.5 443 65.2
Haze_23130 Corylus avellana HOM05D002268 ORTHO05D006937 1.7e-160 570.1 444 66.7
Lj3g0006923 Lotus japonicus HOM05D002268 ORTHO05D006937 1.7e-160 570.1 441 66.2
Nitab4.5_0005819g0070 Nicotiana tabacum HOM05D002268 ORTHO05D006937 2.9e-160 569.3 430 66.5
arahy.Tifrunner.gnm1.ann1.02894U Arachis hypogaea HOM05D002268 ORTHO05D006937 6.5e-160 568.2 435 66.7
arahy.Tifrunner.gnm1.ann1.8VL3CN Arachis hypogaea HOM05D002268 ORTHO05D006937 6.5e-160 568.2 435 66.9
Lalb_Chr19g0138111 Lupinus albus HOM05D002268 ORTHO05D006937 2.5e-159 566.2 440 65.9
Cpa.g.sc84.62 Carica papaya HOM05D002268 ORTHO05D006937 1.2e-158 563.9 441 64.9
PGSC0003DMG400003844 Solanum tuberosum HOM05D002268 ORTHO05D006937 1.2e-158 563.9 434 65.9
arahy.Tifrunner.gnm1.ann1.VSBS4R Arachis hypogaea HOM05D002268 ORTHO05D006937 4.6e-158 562.0 435 66.2
Sc16g0011510 Simmondsia chinensis HOM05D002268 ORTHO05D006937 4.6e-158 562.0 432 67.1
arahy.Tifrunner.gnm1.ann1.AYE0CN Arachis hypogaea HOM05D002268 ORTHO05D006937 7.9e-158 561.2 435 65.7
Gorai.009G073000 Gossypium raimondii HOM05D002268 ORTHO05D006937 7.9e-158 561.2 433 65.4
Actinidia06337 Actinidia chinensis HOM05D002268 ORTHO05D006937 1.0e-157 560.8 411 69.1
DCAR_000723 Daucus carota HOM05D002268 ORTHO05D006937 1.0e-157 560.8 430 65.8
Solyc09g074100.4 Solanum lycopersicum HOM05D002268 ORTHO05D006937 3.9e-157 558.9 434 64.5
Glyma.11G133500 Glycine max HOM05D002268 ORTHO05D006937 5.1e-157 558.5 441 65.3
Potri.001G259000 Populus trichocarpa HOM05D002268 ORTHO05D006937 8.7e-157 557.8 444 64.0
Psat7g212760 Pisum sativum HOM05D002268 ORTHO05D006937 1.1e-156 557.4 441 65.8
CAN.G956.10 Capsicum annuum HOM05D002268 ORTHO05D006937 1.9e-156 556.6 434 64.7
TPR.G35035 Trifolium pratense HOM05D002268 ORTHO05D006937 1.9e-156 556.6 438 66.2
ClCG02G023280 Citrullus lanatus HOM05D002268 ORTHO05D006937 2.5e-156 556.2 478 61.1
Sopen09g028920 Solanum pennellii HOM05D002268 ORTHO05D006937 2.5e-156 556.2 434 64.3
Nn7g36125 Nelumbo nucifera HOM05D002268 ORTHO05D006937 5.7e-156 555.1 442 64.3
Medtr4g065023 Medicago truncatula HOM05D002268 ORTHO05D006937 7.4e-156 554.7 439 65.1
Gohir.D05G072000 Gossypium hirsutum HOM05D002268 ORTHO05D006937 9.7e-156 554.3 433 64.2
Prupe.5G028600 Prunus persica HOM05D002268 ORTHO05D006937 1.3e-155 553.9 442 65.2
MD03G1176400 Malus domestica HOM05D002268 ORTHO05D006937 1.6e-155 553.5 441 64.6
Eucgr.B03681 Eucalyptus grandis HOM05D002268 ORTHO05D006937 2.2e-155 553.1 435 65.7
Hma1.2p1_0861F.1_g229700 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 2.8e-155 552.7 429 65.5
Lj2A631G13 Lonicera japonica HOM05D002268 ORTHO05D006937 8.2e-155 551.2 466 62.2
AUR62019294 Chenopodium quinoa HOM05D002268 ORTHO05D006937 1.8e-154 550.1 435 64.8
MD11G1196700 Malus domestica HOM05D002268 ORTHO05D006937 5.3e-154 548.5 441 63.9
Phvul.011G059600 Phaseolus vulgaris HOM05D002268 ORTHO05D006937 9.1e-154 547.7 441 64.4
PGR102G0832 Punica granatum HOM05D002268 ORTHO05D006937 1.2e-153 547.4 430 64.4
VMungo1127G0743 Vigna mungo HOM05D002268 ORTHO05D006937 1.5e-153 547.0 440 64.1
Oeu043297.4 Olea europaea HOM05D002268 ORTHO05D006937 5.9e-153 545.0 450 62.7
Cc09_g04150 Coffea canephora HOM05D002268 ORTHO05D006937 7.7e-153 544.7 443 62.8
HanXRQChr07g0197481 Helianthus annuus HOM05D002268 ORTHO05D006937 7.7e-153 544.7 440 62.3
Aqoxy1G00300 Aquilegia oxysepala HOM05D002268 ORTHO05D006937 2.5e-151 539.7 444 62.2
BcaB02g11231 Brassica carinata HOM05D002268 ORTHO05D006937 2.7e-150 536.2 441 62.1
Ah.04g161910 Amaranthus hybridus HOM05D002268 ORTHO05D006937 3.6e-150 535.8 436 64.0
SalBow5G0100 Salvia bowleyana HOM05D002268 ORTHO05D006937 1.4e-149 533.9 448 61.4
Thhalv10011432m.g Eutrema salsugineum HOM05D002268 ORTHO05D006937 3.9e-149 532.3 454 61.0
Aa31LG10G3500 Aethionema arabicum HOM05D002268 ORTHO05D006937 5.1e-149 531.9 440 61.8
CARHR041380 Cardamine hirsuta HOM05D002268 ORTHO05D006937 8.8e-149 531.2 429 63.2
Lsat_1_v5_gn_2_97721 Lactuca sativa HOM05D002268 ORTHO05D006937 1.1e-148 530.8 462 59.3
PSO339G2995 Papaver somniferum HOM05D002268 ORTHO05D006937 2.6e-148 529.6 445 62.2
Carub.0001s4017 Capsella rubella HOM05D002268 ORTHO05D006937 4.4e-148 528.9 429 62.9
ECA238G2081 Erigeron canadensis HOM05D002268 ORTHO05D006937 4.4e-148 528.9 442 60.6
PSO384G3396 Papaver somniferum HOM05D002268 ORTHO05D006937 7.4e-148 528.1 445 62.0
Carub.0008s0647 Capsella rubella HOM05D002268 ORTHO05D006937 1.7e-147 526.9 430 62.6
AL1G59110 Arabidopsis lyrata HOM05D002268 ORTHO05D006937 2.8e-147 526.2 429 62.9
AT1G51310 Arabidopsis thaliana HOM05D002268 ORTHO05D006937 2.8e-147 526.2 430 62.6
Sp1g37990 Schrenkiella parvula HOM05D002268 ORTHO05D006937 8.2e-147 524.6 443 60.9
EL10Ac4g10259 Beta vulgaris HOM05D002268 ORTHO05D006937 1.8e-146 523.5 436 63.5
EL10Ac4g10275 Beta vulgaris HOM05D002268 ORTHO05D006937 1.8e-146 523.5 436 63.5
BcaC05g27353 Brassica carinata HOM05D002268 ORTHO05D006937 2.0e-145 520.0 428 62.1
A08p02940 Brassica napus HOM05D002268 ORTHO05D006937 1.7e-144 516.9 441 60.8
Migut.N02313 Erythranthe guttata HOM05D002268 ORTHO05D006937 2.9e-144 516.2 430 61.6
BraA08t32327Z Brassica rapa HOM05D002268 ORTHO05D006937 5.0e-144 515.4 441 60.5
BcaC01g01260 Brassica carinata HOM05D002268 ORTHO05D006937 2.7e-142 509.6 430 60.9
ATR0605G089 Amborella trichopoda HOM05D002268 ORTHO05D006937 6.1e-142 508.4 439 59.9
C03p89920 Brassica napus HOM05D002268 ORTHO05D006937 7.9e-142 508.1 441 59.6
BolC3t21311H Brassica oleracea HOM05D002268 ORTHO05D006937 7.9e-142 508.1 441 59.6
HPP92_009580 Vanilla planifolia HOM05D002268 ORTHO05D006937 1.0e-141 507.7 431 58.5
RcHm_v2.0_Chr7g0231131 Rosa chinensis HOM05D002268 ORTHO05D006937 3.9e-141 505.8 441 60.5
Manes.06G165000 Manihot esculenta HOM05D002268 ORTHO05D006937 5.2e-141 505.4 457 58.9
AUR62000114 Chenopodium quinoa HOM05D002268 ORTHO05D006937 2.0e-140 503.4 487 56.5
FvH4_5g33050 Fragaria vesca HOM05D002268 ORTHO05D006937 2.2e-139 500.0 437 59.7
FAN18G3947 Fragaria x ananassa HOM05D002268 ORTHO05D006937 2.8e-139 499.6 440 59.3
MBI04_g17077_MAGBIO Magnolia biondii HOM05D002268 ORTHO05D006937 1.4e-138 497.3 447 57.5
Sabra16G0158600 Salix brachista HOM05D002268 ORTHO05D006937 1.4e-138 497.3 447 58.2
A05p19700 Brassica napus HOM05D002268 ORTHO05D006937 1.0e-136 491.1 403 62.0
Os03g0174600 Oryza sativa ssp. japonica HOM05D002268 ORTHO05D006937 6.5e-136 488.4 441 56.0
Hund22033 Selenicereus undatus HOM05D002268 ORTHO05D006937 3.3e-132 476.1 445 59.1
Zm00001eb005670 Zea mays HOM05D002268 ORTHO05D006937 1.7e-131 473.8 443 53.0
SGA_v2.0_scaffold42G16104 Striga asiatica HOM05D002268 ORTHO05D006937 2.1e-126 456.8 442 54.1
CDE04G2511 Ceratophyllum demersum HOM05D002268 ORTHO05D006937 5.4e-122 442.2 430 54.7
Lsat_1_v5_gn_2_132680 Lactuca sativa HOM05D002268 ORTHO05D006937 5.4e-122 442.2 433 53.6
TAR369G0718 Trochodendron aralioides HOM05D002268 ORTHO05D006937 1.5e-119 434.1 344 65.4
BolC5t32017H Brassica oleracea HOM05D002268 ORTHO05D006937 1.2e-118 431.0 467 51.0
SEGI_13867 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 2.1e-118 430.3 408 54.2
Thecc.09G232700 Theobroma cacao HOM05D002268 ORTHO05D006937 2.8e-115 419.9 344 62.2
Peaxi162Scf00004g00224 Petunia axillaris HOM05D002268 ORTHO05D006937 9.5e-111 404.8 418 53.8
C05p32860 Brassica napus HOM05D002268 ORTHO05D006937 3.4e-108 396.4 446 49.3
Ciclev10006706m.g Citrus clementina HOM05D002268 ORTHO05D006937 2.1e-102 377.1 509 45.4
Actinidia26439 Actinidia chinensis HOM05D002268 ORTHO05D006937 4.9e-99 365.9 312 63.1
Dinv22182 Davidia involucrata HOM05D002268 ORTHO05D006937 2.3e-96 357.1 276 65.9
Pp3c15_1840 Physcomitrium patens HOM05D002268 ORTHO05D006937 1.2e-94 351.3 428 46.7
SMO331G0070 Selaginella moellendorffii HOM05D002268 ORTHO05D006937 1.8e-93 347.4 415 46.5
Mapoly0129s0019 Marchantia polymorpha HOM05D002268 ORTHO05D006937 2.6e-92 343.6 441 42.9
Hma1.2p1_0861F.1_g229710 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 4.9e-91 339.3 276 63.0
AagrBONN_evm.TU.Sc2ySwM_340.361 Anthoceros agrestis HOM05D002268 ORTHO05D006937 1.2e-89 334.7 442 42.5
Glyma.12G057700 Glycine max HOM05D002268 ORTHO05D006937 1.1e-82 311.6 261 60.9
PRCOL_00001138 Prasinoderma coloniale HOM05D002268 ORTHO05D006937 7.6e-76 288.9 412 41.0
FAN08G3580 Fragaria x ananassa HOM05D002268 ORTHO05D006937 1.1e-74 285.0 276 54.3
AagrBONN_evm.TU.Sc2ySwM_368.606 Anthoceros agrestis HOM05D002268 ORTHO05D006937 7.1e-74 282.3 388 41.8
MCO02G416 Micromonas commoda HOM05D002268 ORTHO05D006937 6.6e-72 275.8 469 38.0
CBR_g40742 Chara braunii HOM05D002268 ORTHO05D006937 7.3e-71 272.3 479 38.0
BcaB04g17220 Brassica carinata HOM05D002268 ORTHO05D006937 7.6e-68 262.3 182 70.9
FAN04G1610 Fragaria x ananassa HOM05D002268 ORTHO05D006937 1.9e-66 257.7 276 50.0
unitig_21.g20902 Utricularia gibba HOM05D002268 ORTHO05D007950 1.0e-64 251.9 202 62.9
Cre14.g628000 Chlamydomonas reinhardtii HOM05D002268 ORTHO05D006937 2.6e-60 237.3 582 30.4
Hma1.2p1_0861F.1_g229720 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 2.1e-57 227.6 138 77.5
Gohir.A05G069100 Gossypium hirsutum HOM05D002268 ORTHO05D006937 3.4e-52 210.3 158 64.6
C03p89950 Brassica napus HOM05D002268 ORTHO05D001336 5.1e-48 196.4 226 50.4
BcaC01g01262 Brassica carinata HOM05D002268 ORTHO05D006937 1.3e-46 191.8 208 53.4
BolC3t21314H Brassica oleracea HOM05D002268 ORTHO05D006937 2.2e-43 181.0 226 47.8
unitig_21.g20901 Utricularia gibba HOM05D002268 ORTHO05D006937 1.4e-34 151.8 136 58.8
CSS0037797 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 7.9e-33 146.0 186 46.8
SEGI_07269 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 1.0e-32 145.6 97 70.1
CBR_g19922 Chara braunii HOM05D002268 ORTHO05D021278 4.7e-25 120.2 337 28.2
Nn3g21873 Nelumbo nucifera HOM05D002268 ORTHO05D006937 6.1e-25 119.8 91 67.0
MSTRG.17590 Avicennia marina HOM05D002268 ORTHO05D006937 3.7e-22 110.5 72 70.8
SEGI_39418 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 3.7e-22 110.5 112 47.3
Pp3c4_6690 Physcomitrium patens HOM05D002268 ORTHO05D021278 8.2e-22 109.4 400 25.2
Lsat_1_v5_gn_1_117501 Lactuca sativa HOM05D002268 ORTHO05D006937 1.1e-21 109.0 74 66.2
MCO12G105 Micromonas commoda HOM05D002268 ORTHO05D021278 3.1e-21 107.5 362 27.9
C03p89940 Brassica napus HOM05D002268 ORTHO05D040778 5.3e-21 106.7 106 56.6
PRCOL_00001597 Prasinoderma coloniale HOM05D002268 ORTHO05D021278 7.7e-20 102.8 384 25.5
BolC3t21313H Brassica oleracea HOM05D002268 ORTHO05D040778 6.5e-19 99.8 102 55.9
MELO3C029180.2 Cucumis melo HOM05D002268 ORTHO05D168145 1.1e-18 99.0 208 37.0
AagrBONN_evm.TU.Sc2ySwM_117.3752 Anthoceros agrestis HOM05D002268 ORTHO05D021278 1.5e-18 98.6 159 36.5
Mapoly0010s0199 Marchantia polymorpha HOM05D002268 ORTHO05D021278 8.8e-16 89.4 383 23.2
MELO3C032733.2 Cucumis melo HOM05D002268 ORTHO05D170637 5.7e-15 86.7 209 33.5
A08p02920 Brassica napus HOM05D002268 ORTHO05D099342 2.7e-12 77.8 112 45.5
MELO3C035704.2 Cucumis melo HOM05D002268 ORTHO05D166817 2.2e-11 74.7 128 37.5


User provided reference genes

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