Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030580 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 2.1e-58 229.2 151 100.0
MSTRG.19534 Avicennia marina HOM05D002859 ORTHO05D003120 5.7e-27 124.8 63 88.9
SalBow7G1391 Salvia bowleyana HOM05D002859 ORTHO05D003120 2.4e-25 119.4 63 87.3
Migut.C00325 Erythranthe guttata HOM05D002859 ORTHO05D003120 3.1e-25 119.0 63 87.3
TAR622G0268 Trochodendron aralioides HOM05D002859 ORTHO05D003120 3.1e-25 119.0 145 47.6
Oeu020000.2 Olea europaea HOM05D002859 ORTHO05D003120 4.5e-24 115.2 63 82.5
Hma1.2p1_0562F.1_g179040 Hydrangea macrophylla HOM05D002859 ORTHO05D003120 1.3e-23 113.6 64 82.8
Manes.08G097900 Manihot esculenta HOM05D002859 ORTHO05D003120 1.7e-23 113.2 68 80.9
Peaxi162Scf00760g00025 Petunia axillaris HOM05D002859 ORTHO05D003120 2.9e-23 112.5 66 83.3
MSTRG.6038 Avicennia marina HOM05D002859 ORTHO05D003120 3.8e-23 112.1 63 81.0
SGA_v2.0_scaffold43G16338 Striga asiatica HOM05D002859 ORTHO05D003120 6.5e-23 111.3 63 81.0
DCAR_024637 Daucus carota HOM05D001551 ORTHO05D003120 8.5e-23 110.9 70 81.4
Sopen11g017270 Solanum pennellii HOM05D002859 ORTHO05D003120 8.5e-23 110.9 67 82.1
PGSC0003DMG400027997 Solanum tuberosum HOM05D002859 ORTHO05D003120 8.5e-23 110.9 67 82.1
Aqoxy5G02902 Aquilegia oxysepala HOM05D002859 ORTHO05D003120 1.1e-22 110.5 64 81.2
Actinidia13520 Actinidia chinensis HOM05D002859 ORTHO05D003120 1.4e-22 110.2 69 82.6
Sabra03G0115000 Salix brachista HOM05D002859 ORTHO05D003120 1.4e-22 110.2 67 79.1
Solyc11g040110.2 Solanum lycopersicum HOM05D002859 ORTHO05D003120 1.9e-22 109.8 68 83.8
Thecc.01G233400 Theobroma cacao HOM05D002859 ORTHO05D003120 1.9e-22 109.8 67 79.1
PGR119G1480 Punica granatum HOM05D002859 ORTHO05D003120 4.2e-22 108.6 76 73.7
unitig_749.g13863 Utricularia gibba HOM05D002859 ORTHO05D003120 4.2e-22 108.6 60 81.7
CiPaw.06G112300 Carya illinoinensis HOM05D002859 ORTHO05D003120 5.5e-22 108.2 76 75.0
vmacro15978 Vaccinium macrocarpon HOM05D002859 ORTHO05D003120 5.5e-22 108.2 147 46.9
Nitab4.5_0002113g0060 Nicotiana tabacum HOM05D002859 ORTHO05D003120 7.2e-22 107.8 63 84.1
RcHm_v2.0_Chr4g0428171 Rosa chinensis HOM05D002859 ORTHO05D003120 7.2e-22 107.8 67 80.6
Cfa009482 Carpinus fangiana HOM05D002859 ORTHO05D003120 1.2e-21 107.1 75 73.3
Haze_12545 Corylus avellana HOM05D002859 ORTHO05D003120 1.2e-21 107.1 75 73.3
QL03p046958 Quercus lobata HOM05D002859 ORTHO05D003120 1.2e-21 107.1 72 75.0
Potri.003G158500 Populus trichocarpa HOM05D002859 ORTHO05D003120 1.6e-21 106.7 67 76.1
Cpa.g.sc125.35 Carica papaya HOM05D002859 ORTHO05D003120 2.1e-21 106.3 71 76.1
Potri.001G072300 Populus trichocarpa HOM05D002859 ORTHO05D003120 2.1e-21 106.3 67 76.1
AUR62005721 Chenopodium quinoa HOM05D002859 ORTHO05D003120 2.7e-21 105.9 63 82.5
AUR62028836 Chenopodium quinoa HOM05D002859 ORTHO05D003120 2.7e-21 105.9 63 82.5
AUR62032914 Chenopodium quinoa HOM05D002859 ORTHO05D003120 2.7e-21 105.9 63 82.5
COL.COLO4_15649 Corchorus olitorius HOM05D002859 ORTHO05D003120 2.7e-21 105.9 69 76.8
Prupe.1G209900 Prunus persica HOM05D002859 ORTHO05D003120 2.7e-21 105.9 71 76.1
Duzib147G0632 Durio zibethinus HOM05D002859 ORTHO05D003120 3.6e-21 105.5 69 75.4
Rhsim12G0090700 Rhododendron simsii HOM05D002859 ORTHO05D003120 3.6e-21 105.5 59 83.1
Sabra01G0050900 Salix brachista HOM05D002859 ORTHO05D003120 3.6e-21 105.5 66 75.8
ATR0582G250 Amborella trichopoda HOM05D002859 ORTHO05D003120 4.7e-21 105.1 65 80.0
Dinv07615 Davidia involucrata HOM05D002859 ORTHO05D003120 4.7e-21 105.1 79 70.9
SEGI_41282 Sequoiadendron giganteum HOM05D002859 ORTHO05D003120 4.7e-21 105.1 68 73.5
FvH4_4g21981 Fragaria vesca HOM05D002859 ORTHO05D003120 6.1e-21 104.8 68 77.9
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 6.1e-21 104.8 68 77.9
Aa31LG3G14170 Aethionema arabicum HOM05D002859 ORTHO05D003120 7.9e-21 104.4 70 74.3
Carub.0008s0730 Capsella rubella HOM05D002859 ORTHO05D003120 7.9e-21 104.4 70 74.3
PSO017G4346 Papaver somniferum HOM05D002859 ORTHO05D003120 7.9e-21 104.4 67 77.6
PSO478G1678 Papaver somniferum HOM05D002859 ORTHO05D003120 7.9e-21 104.4 67 77.6
EL10Ac6g13615 Beta vulgaris HOM05D002859 ORTHO05D003120 1.0e-20 104.0 62 82.3
Cc11_g14830 Coffea canephora HOM05D002859 ORTHO05D003120 1.0e-20 104.0 62 82.3
Lsat_1_v5_gn_3_33360 Lactuca sativa HOM05D002859 ORTHO05D003120 1.0e-20 104.0 68 77.9
A06p39500 Brassica napus HOM05D002859 ORTHO05D003120 1.4e-20 103.6 70 74.3
C07p38770 Brassica napus HOM05D002859 ORTHO05D003120 1.4e-20 103.6 70 74.3
BolC7t44396H Brassica oleracea HOM05D002859 ORTHO05D003120 1.4e-20 103.6 70 74.3
BraA06t26865Z Brassica rapa HOM05D002859 ORTHO05D003120 1.4e-20 103.6 70 74.3
Thhalv10004932m.g Eutrema salsugineum HOM05D002859 ORTHO05D003120 1.4e-20 103.6 70 74.3
Gohir.A06G110404 Gossypium hirsutum HOM05D002859 ORTHO05D003120 1.4e-20 103.6 67 74.6
Gohir.D06G123600 Gossypium hirsutum HOM05D002859 ORTHO05D003120 1.4e-20 103.6 67 74.6
Gorai.010G143800 Gossypium raimondii HOM05D002859 ORTHO05D003120 1.4e-20 103.6 67 74.6
THA.LOC104801415 Tarenaya hassleriana HOM05D002859 ORTHO05D003120 1.4e-20 103.6 70 72.9
AL8G19860 Arabidopsis lyrata HOM05D002859 ORTHO05D003120 1.8e-20 103.2 70 72.9
Nitab4.5_0007261g0050 Nicotiana tabacum HOM05D002859 ORTHO05D003120 1.8e-20 103.2 63 81.0
AT5G47870 Arabidopsis thaliana HOM05D002859 ORTHO05D003120 2.3e-20 102.8 71 71.8
CiPaw.05G096600 Carya illinoinensis HOM05D002859 ORTHO05D003120 2.3e-20 102.8 74 74.3
Sp2g18370 Schrenkiella parvula HOM05D002859 ORTHO05D003120 2.3e-20 102.8 70 72.9
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 3.0e-20 102.4 68 76.5
Gohir.A09G003000 Gossypium hirsutum HOM05D002859 ORTHO05D003120 3.0e-20 102.4 68 75.0
Gohir.D09G002800 Gossypium hirsutum HOM05D002859 ORTHO05D003120 3.0e-20 102.4 68 75.0
Gorai.006G003500 Gossypium raimondii HOM05D002859 ORTHO05D003120 3.0e-20 102.4 68 75.0
HanXRQChr06g0175341 Helianthus annuus HOM05D002859 ORTHO05D003120 3.0e-20 102.4 66 78.8
Atru.chr12.1488 Acer truncatum HOM05D002859 ORTHO05D003120 6.7e-20 101.3 67 73.1
LjContig00470g0013393 Lotus japonicus HOM05D002859 ORTHO05D003120 6.7e-20 101.3 71 71.8
Phvul.007G000200 Phaseolus vulgaris HOM05D002859 ORTHO05D003120 6.7e-20 101.3 71 71.8
VMungo0720G1303 Vigna mungo HOM05D002859 ORTHO05D003120 6.7e-20 101.3 71 71.8
MELO3C017029.2 Cucumis melo HOM05D002859 ORTHO05D003120 8.8e-20 100.9 74 70.3
Duzib264G1276 Durio zibethinus HOM05D002859 ORTHO05D003120 1.1e-19 100.5 74 70.3
A09p04270 Brassica napus HOM05D002859 ORTHO05D003120 1.5e-19 100.1 70 71.4
Glyma.20G249700 Glycine max HOM05D002859 ORTHO05D003120 1.5e-19 100.1 64 79.7
BcaC04g18597 Brassica carinata HOM05D002859 ORTHO05D003120 2.0e-19 99.8 68 73.5
C07p05140 Brassica napus HOM05D002859 ORTHO05D003120 2.6e-19 99.4 70 72.9
C09p57160 Brassica napus HOM05D002859 ORTHO05D003120 2.6e-19 99.4 68 73.5
BolC7t40912H Brassica oleracea HOM05D002859 ORTHO05D003120 2.6e-19 99.4 70 72.9
CsaV3_4G037320 Cucumis sativus L. HOM05D002859 ORTHO05D003120 2.6e-19 99.4 74 68.9
TWI18G0030 Tripterygium wilfordii HOM05D002859 ORTHO05D003120 2.6e-19 99.4 73 71.2
Eucgr.J01700 Eucalyptus grandis HOM05D002859 ORTHO05D003120 3.3e-19 99.0 80 65.0
TWI36G1325 Tripterygium wilfordii HOM05D002859 ORTHO05D003120 3.3e-19 99.0 73 67.1
BcaB04g19538 Brassica carinata HOM05D002859 ORTHO05D003120 5.7e-19 98.2 71 69.0
Nn3g16168 Nelumbo nucifera HOM05D002859 ORTHO05D003120 5.7e-19 98.2 62 74.2
unitig_26.g9853 Utricularia gibba HOM05D002859 ORTHO05D003120 5.7e-19 98.2 60 75.0
BcaB04g19541 Brassica carinata HOM05D002859 ORTHO05D003120 7.4e-19 97.8 70 71.4
BcaC04g23802 Brassica carinata HOM05D002859 ORTHO05D003120 7.4e-19 97.8 70 71.4
CARHR184440 Cardamine hirsuta HOM05D002859 ORTHO05D003120 9.7e-19 97.4 69 71.0
Ah.02g131400 Amaranthus hybridus HOM05D002859 ORTHO05D003120 1.3e-18 97.1 63 76.2
BolC9t53381H Brassica oleracea HOM05D002859 ORTHO05D003120 1.3e-18 97.1 70 70.0
BraA09t36064Z Brassica rapa HOM05D002859 ORTHO05D003120 1.3e-18 97.1 70 70.0
Psat1g053360 Pisum sativum HOM05D002859 ORTHO05D003120 1.3e-18 97.1 70 71.4
PGR102G2374 Punica granatum HOM05D002859 ORTHO05D003120 1.7e-18 96.7 70 71.4
arahy.Tifrunner.gnm1.ann1.8K0JZH Arachis hypogaea HOM05D002859 ORTHO05D003120 2.2e-18 96.3 65 69.2
Ciclev10029280m.g Citrus clementina HOM05D002859 ORTHO05D003120 2.8e-18 95.9 68 72.1
Eucgr.B03576 Eucalyptus grandis HOM05D002859 ORTHO05D003120 2.8e-18 95.9 73 67.1
Os09g0512800 Oryza sativa ssp. japonica HOM05D002859 ORTHO05D003120 6.3e-18 94.7 61 72.1
Ca_04133_v3 Cicer arietinum L. HOM05D002859 ORTHO05D003120 1.1e-17 94.0 79 62.0
Sed0008148 Sechium edule HOM05D002859 ORTHO05D003120 1.1e-17 94.0 74 66.2
TPR.G25234 Trifolium pratense HOM05D002859 ORTHO05D003120 1.1e-17 94.0 80 62.5
Lsat_1_v5_gn_9_83061 Lactuca sativa HOM05D002859 ORTHO05D003120 1.4e-17 93.6 67 70.1
Lalb_Chr02g0144701 Lupinus albus HOM05D002859 ORTHO05D003120 1.4e-17 93.6 72 70.8
Medtr6g004130 Medicago truncatula HOM05D002859 ORTHO05D003120 1.4e-17 93.6 74 66.2
ECA246G3705 Erigeron canadensis HOM05D002859 ORTHO05D003120 1.8e-17 93.2 58 77.6
CDE02G1285 Ceratophyllum demersum HOM05D002859 ORTHO05D003120 4.1e-17 92.0 64 67.2
Lj3A1079G49 Lonicera japonica HOM05D002859 ORTHO05D003120 4.1e-17 92.0 78 62.8
HPP92_001279 Vanilla planifolia HOM05D002859 ORTHO05D003120 4.1e-17 92.0 62 74.2
Zm00001eb318170 Zea mays HOM05D002859 ORTHO05D003120 7.0e-17 91.3 61 70.5
CDE02G4248 Ceratophyllum demersum HOM05D002859 ORTHO05D003120 2.0e-16 89.7 58 72.4
SMO358G0157 Selaginella moellendorffii HOM05D002859 ORTHO05D003120 3.5e-16 89.0 68 63.2
Zm00001eb064620 Zea mays HOM05D002859 ORTHO05D003120 4.5e-16 88.6 68 66.2
GSVIVG01001140001 Vitis vinifera HOM05D002859 ORTHO05D003120 2.2e-15 86.3 49 85.7
Ah.03g135470 Amaranthus hybridus HOM05D002859 ORTHO05D003120 5.0e-15 85.1 64 71.9
C09p04510 Brassica napus HOM05D002859 ORTHO05D003120 5.0e-15 85.1 98 51.0
AagrBONN_evm.TU.Sc2ySwM_117.3205 Anthoceros agrestis HOM05D002859 ORTHO05D003120 1.1e-14 84.0 64 62.5
Mapoly0077s0052 Marchantia polymorpha HOM05D002859 ORTHO05D003120 1.1e-14 84.0 64 64.1
HPP92_007177 Vanilla planifolia HOM05D002859 ORTHO05D003120 1.1e-14 84.0 60 71.7
Os03g0851500 Oryza sativa ssp. japonica HOM05D002859 ORTHO05D003120 5.5e-14 81.6 60 66.7
Pp3c1_32560 Physcomitrium patens HOM05D002859 ORTHO05D003120 5.5e-14 81.6 69 56.5
SEGI_07111 Sequoiadendron giganteum HOM05D002859 ORTHO05D003120 2.7e-13 79.3 66 62.1
BcaB04g19542 Brassica carinata HOM05D002859 ORTHO05D003120 8.0e-13 77.8 65 69.2
Sc14g0009280 Simmondsia chinensis HOM05D002859 ORTHO05D003120 1.1e-09 67.4 40 82.5
Glyma.10G298500 Glycine max HOM05D002859 ORTHO05D003120 4.1e-09 65.5 43 76.7
TAR381G0145 Trochodendron aralioides HOM05D002859 ORTHO05D003120 2.7e-08 62.8 63 46.0
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 1.0e-07 60.8 47 53.2
Carub.0002s1818 Capsella rubella HOM05D002859 ORTHO05D003120 2.2e-07 59.7 51 51.0
DCAR_014056 Daucus carota HOM05D002859 ORTHO05D003120 2.9e-07 59.3 64 43.8
SalBow7G1103 Salvia bowleyana HOM05D002859 ORTHO05D003120 2.9e-07 59.3 52 48.1
AT1G71310 Arabidopsis thaliana HOM05D002859 ORTHO05D003120 3.8e-07 58.9 51 49.0
AL2G30910 Arabidopsis lyrata HOM05D002859 ORTHO05D003120 6.5e-07 58.2 51 49.0
CiPaw.04G008400 Carya illinoinensis HOM05D002859 ORTHO05D003120 6.5e-07 58.2 57 47.4
Thhalv10019211m.g Eutrema salsugineum HOM05D002859 ORTHO05D003120 6.5e-07 58.2 51 49.0
Glyma.09G234000 Glycine max HOM05D002859 ORTHO05D003120 6.5e-07 58.2 54 50.0
Nn5g27200 Nelumbo nucifera HOM05D002859 ORTHO05D003120 6.5e-07 58.2 80 40.0
Eucgr.F04091 Eucalyptus grandis HOM05D002859 ORTHO05D003120 8.5e-07 57.8 51 47.1
Aa31LG4G9230 Aethionema arabicum HOM05D002859 ORTHO05D003120 1.5e-06 57.0 51 47.1
CARHR064600 Cardamine hirsuta HOM05D002859 ORTHO05D003120 1.5e-06 57.0 51 47.1
Ca_25698_v3 Cicer arietinum L. HOM05D002859 ORTHO05D003120 1.5e-06 57.0 67 41.8
VMungo1127G0800 Vigna mungo HOM05D002859 ORTHO05D003120 1.5e-06 57.0 52 48.1
Lalb_Chr01g0000171 Lupinus albus HOM05D002859 ORTHO05D003120 1.9e-06 56.6 53 45.3
QL09p001171 Quercus lobata HOM05D002859 ORTHO05D003120 1.9e-06 56.6 51 47.1
CANSAT54G1349 Cannabis sativa HOM05D002859 ORTHO05D003120 2.5e-06 56.2 51 47.1
Haze_14010 Corylus avellana HOM05D002859 ORTHO05D003120 2.5e-06 56.2 51 45.1
Prupe.8G001500 Prunus persica HOM05D002859 ORTHO05D003120 2.5e-06 56.2 51 47.1
arahy.Tifrunner.gnm1.ann1.FCJ5UL Arachis hypogaea HOM05D002859 ORTHO05D003120 3.2e-06 55.8 52 46.2
arahy.Tifrunner.gnm1.ann1.J0PFQP Arachis hypogaea HOM05D002859 ORTHO05D003120 3.2e-06 55.8 52 46.2
Manes.05G123347 Manihot esculenta HOM05D002859 ORTHO05D003120 3.2e-06 55.8 51 47.1
SEGI_34420 Sequoiadendron giganteum HOM05D002859 ORTHO05D003120 3.2e-06 55.8 69 44.9
BcaC08g45785 Brassica carinata HOM05D002859 ORTHO05D003120 4.2e-06 55.5 51 49.0
A07p30790 Brassica napus HOM05D002859 ORTHO05D003120 4.2e-06 55.5 51 49.0
C06p35690 Brassica napus HOM05D002859 ORTHO05D003120 4.2e-06 55.5 51 49.0
BolC6t38692H Brassica oleracea HOM05D002859 ORTHO05D003120 4.2e-06 55.5 51 49.0
BraA07t30716Z Brassica rapa HOM05D002859 ORTHO05D003120 4.2e-06 55.5 51 49.0
MD05G1000800 Malus domestica HOM05D002859 ORTHO05D003120 4.2e-06 55.5 51 45.1
Sc05g0005770 Simmondsia chinensis HOM05D002859 ORTHO05D003120 4.2e-06 55.5 50 46.0
ATR1089G066 Amborella trichopoda HOM05D002859 ORTHO05D003120 5.5e-06 55.1 52 46.2
CSS0033199 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 5.5e-06 55.1 69 37.7
Medtr4g035350 Medicago truncatula HOM05D002859 ORTHO05D003120 5.5e-06 55.1 52 46.2
THA.LOC104809758 Tarenaya hassleriana HOM05D002859 ORTHO05D003120 5.5e-06 55.1 60 41.7
Lj3g0004795 Lotus japonicus HOM05D002859 ORTHO05D003120 7.2e-06 54.7 52 48.1
Nitab4.5_0000079g0100 Nicotiana tabacum HOM05D002859 ORTHO05D003120 7.2e-06 54.7 61 45.9
Psat7g149800 Pisum sativum HOM05D002859 ORTHO05D003120 7.2e-06 54.7 52 46.2
Solyc08g005060.3 Solanum lycopersicum HOM05D002859 ORTHO05D003120 7.2e-06 54.7 54 44.4
Sopen08g001080 Solanum pennellii HOM05D002859 ORTHO05D003120 7.2e-06 54.7 54 44.4
BcaB03g15599 Brassica carinata HOM05D002859 ORTHO05D003120 9.4e-06 54.3 51 47.1
Nitab4.5_0004387g0010 Nicotiana tabacum HOM05D002859 ORTHO05D003120 9.4e-06 54.3 59 45.8
Oeu028619.1 Olea europaea HOM05D002859 ORTHO05D003120 9.4e-06 54.3 52 44.2
Phvul.011G003500 Phaseolus vulgaris HOM05D002859 ORTHO05D003120 9.4e-06 54.3 52 44.2
Thecc.08G165600 Theobroma cacao HOM05D002859 ORTHO05D003120 9.4e-06 54.3 48 45.8
TPR.G25997 Trifolium pratense HOM05D002859 ORTHO05D003120 9.4e-06 54.3 51 47.1


User provided reference genes

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