Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 2.9e-202 708.4 365 100.0
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 3.6e-184 648.3 337 99.4
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 2.3e-162 575.9 341 88.0
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 1.1e-156 557.0 336 84.8
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 2.8e-152 542.3 344 81.1
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 5.8e-150 534.6 330 83.0
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 7.5e-150 534.3 338 81.1
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 9.8e-150 533.9 346 81.2
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 2.9e-149 532.3 348 79.9
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 2.9e-149 532.3 336 81.8
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 1.4e-148 530.0 337 80.4
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 1.4e-148 530.0 330 81.5
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 3.2e-148 528.9 335 81.2
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 2.7e-147 525.8 330 82.1
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 2.7e-147 525.8 330 81.2
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 7.8e-147 524.2 333 81.1
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 2.3e-146 522.7 335 80.6
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 3.3e-145 518.8 342 78.1
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 3.6e-144 515.4 341 76.2
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 1.1e-143 513.8 324 80.6
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 1.4e-143 513.5 329 78.7
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 3.1e-143 512.3 336 78.9
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 8.9e-143 510.8 338 79.0
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 1.2e-142 510.4 332 78.3
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 7.5e-142 507.7 361 77.6
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 3.7e-141 505.4 325 80.3
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 8.3e-141 504.2 329 77.5
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 1.1e-140 503.8 337 77.4
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 1.4e-140 503.4 336 76.5
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 1.9e-140 503.1 334 77.5
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 2.4e-140 502.7 337 77.2
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 1.6e-139 500.0 354 76.0
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 3.5e-139 498.8 333 77.5
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 7.8e-139 497.7 336 73.5
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 7.8e-139 497.7 334 76.9
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 2.3e-138 496.1 328 78.0
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 5.1e-138 495.0 328 78.4
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 8.6e-138 494.2 328 77.7
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 1.5e-137 493.4 336 74.4
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 3.1e-135 485.7 330 76.1
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 4.0e-135 485.3 330 76.4
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 4.0e-135 485.3 336 73.8
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 1.2e-134 483.8 337 74.2
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 1.2e-134 483.8 338 74.6
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 5.8e-134 481.5 339 73.5
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 5.8e-134 481.5 314 79.3
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 5.8e-134 481.5 411 67.4
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 9.9e-134 480.7 337 74.2
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 1.7e-133 479.9 335 74.0
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 2.4e-132 476.1 328 74.7
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 4.1e-132 475.3 276 87.3
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 7.1e-132 474.6 335 74.0
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 1.6e-131 473.4 345 71.3
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 4.6e-131 471.9 319 77.7
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 4.6e-131 471.9 343 72.3
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 6.0e-131 471.5 335 75.2
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 6.0e-131 471.5 326 73.6
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 7.8e-131 471.1 335 75.2
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 1.3e-130 470.3 336 73.5
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 1.7e-130 469.9 328 73.5
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 3.0e-130 469.2 328 73.2
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 3.9e-130 468.8 328 73.5
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 6.6e-130 468.0 328 73.5
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 6.6e-130 468.0 328 73.5
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 6.6e-130 468.0 328 72.6
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 6.6e-130 468.0 334 73.7
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 1.1e-129 467.2 328 73.2
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 2.5e-129 466.1 372 68.5
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 2.5e-129 466.1 334 73.4
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 5.6e-129 464.9 342 71.9
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 9.6e-129 464.2 337 72.4
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 1.6e-128 463.4 311 74.3
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 1.6e-128 463.4 308 74.4
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 2.1e-128 463.0 305 78.4
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 2.1e-128 463.0 330 72.4
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 2.8e-128 462.6 330 73.0
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 2.8e-128 462.6 330 73.0
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 3.6e-128 462.2 336 73.5
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 4.0e-127 458.8 330 72.1
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 6.8e-127 458.0 345 68.7
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 5.8e-126 454.9 376 65.2
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 7.6e-126 454.5 318 77.4
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 4.9e-125 451.8 333 71.8
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 6.4e-125 451.4 358 68.2
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 1.1e-124 450.7 344 71.2
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 1.6e-123 446.8 328 70.7
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 6.0e-123 444.9 365 67.4
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 4.3e-121 438.7 364 65.4
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 2.4e-119 433.0 308 72.7
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 2.0e-118 429.9 306 76.8
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 7.6e-118 427.9 306 71.9
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.7e-117 426.8 274 79.6
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 9.3e-116 421.0 249 86.7
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 5.1e-114 415.2 333 68.8
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 5.6e-113 411.8 281 75.1
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 7.3e-113 411.4 269 78.4
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.3e-112 410.6 306 69.3
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 9.0e-111 404.4 296 71.6
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 1.5e-110 403.7 331 63.4
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 6.4e-109 398.3 305 70.2
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 1.9e-108 396.7 304 67.4
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 3.1e-103 379.4 300 64.3
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 4.5e-102 375.6 297 66.0
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 7.6e-102 374.8 283 69.3
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 1.0e-101 374.4 308 62.0
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 1.3e-98 364.0 213 86.9
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 3.9e-98 362.5 210 86.7
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 3.9e-98 362.5 248 72.6
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 9.6e-97 357.8 237 81.0
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 6.1e-91 338.6 204 83.3
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 1.1e-89 334.3 301 57.5
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 1.1e-87 327.8 232 75.9
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 1.2e-83 314.3 275 58.5
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 2.1e-75 287.0 206 71.4
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 4.4e-73 279.3 197 73.6
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 4.4e-73 279.3 169 82.2
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 2.7e-67 260.0 197 70.6
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 2.8e-64 250.0 306 44.1
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 7.7e-54 215.3 148 76.4
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 4.5e-46 189.5 291 40.9
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 1.1e-44 184.9 139 72.7
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 1.6e-35 154.5 103 72.8
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 9.2e-31 138.7 97 74.2
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 6.6e-29 132.5 113 62.8
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 1.2e-27 128.3 99 69.7
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 6.8e-26 122.5 95 67.4
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 2.0e-25 120.9 246 38.2
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 4.1e-23 113.2 79 69.6
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 1.5e-20 104.8 99 52.5
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 4.3e-20 103.2 118 55.1
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 5.6e-20 102.8 81 58.0
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 5.6e-20 102.8 61 82.0
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 5.6e-20 102.8 62 82.3
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 9.5e-20 102.1 62 83.9
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 1.6e-19 101.3 91 58.2
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.1e-19 100.9 62 83.9
SMO147G0310 Selaginella moellendorffii HOM05D000066 ORTHO05D373802 2.3e-18 97.4 106 50.0
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.7e-16 90.1 56 82.1
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 4.9e-16 89.7 55 83.6
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 6.2e-11 72.8 79 53.2
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 4.4e-09 66.6 42 76.2
SMO147G0023 Selaginella moellendorffii HOM05D005156 ORTHO05D376049 7.6e-09 65.9 164 34.1
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 1.7e-08 64.7 40 80.0
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 2.9e-08 63.9 40 77.5
Rhsim07G0166700 Rhododendron simsii HOM05D005156 ORTHO05D050672 2.9e-08 63.9 69 53.6
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 3.8e-08 63.5 38 78.9
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 6.4e-08 62.8 35 85.7


User provided reference genes

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