Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 9.2e-133 476.9 237 100.0
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.1e-128 463.4 237 97.0
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 4.2e-101 371.7 236 75.4
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.5e-101 371.3 238 75.6
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 6.7e-99 364.4 236 77.1
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 4.8e-97 358.2 237 74.3
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 6.5e-94 347.8 234 73.1
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 4.2e-93 345.1 231 74.0
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 2.9e-86 322.4 240 65.4
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 3.6e-84 315.5 241 67.2
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 1.2e-79 300.4 239 62.3
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 2.0e-79 299.7 240 61.7
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 2.6e-79 299.3 240 59.6
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 4.5e-79 298.5 239 60.3
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.0e-78 297.4 234 65.8
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 1.7e-78 296.6 231 63.6
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 1.7e-78 296.6 239 61.9
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.2e-78 296.2 239 59.4
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 2.1e-76 289.7 237 59.9
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 1.4e-75 287.0 236 60.6
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 2.3e-75 286.2 230 60.0
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 3.0e-75 285.8 240 60.4
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.0e-75 285.8 240 60.0
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 1.3e-73 280.4 238 58.8
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 1.7e-73 280.0 238 59.2
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 2.2e-73 279.6 240 58.3
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 2.2e-73 279.6 240 58.3
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 2.8e-73 279.3 232 58.6
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 4.8e-73 278.5 232 58.6
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 6.3e-73 278.1 240 59.2
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 6.3e-73 278.1 240 57.9
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 1.4e-72 276.9 240 57.5
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.8e-72 276.6 240 58.3
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 5.3e-72 275.0 240 58.8
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 7.0e-72 274.6 230 58.7
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 9.1e-72 274.2 237 58.2
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 1.6e-71 273.5 237 57.4
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 2.0e-71 273.1 224 61.2
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 2.6e-71 272.7 232 59.9
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 3.5e-71 272.3 228 58.8
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 4.5e-71 271.9 240 57.1
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 7.7e-71 271.2 228 58.8
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.0e-70 270.8 232 58.2
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 1.0e-70 270.8 234 56.0
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.3e-70 270.4 243 57.2
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 1.7e-70 270.0 240 56.7
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.7e-70 270.0 241 56.4
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.2e-70 269.6 228 58.3
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 5.0e-70 268.5 200 62.5
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 4.2e-69 265.4 241 56.4
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.1e-68 263.1 242 55.0
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 1.0e-67 260.8 243 54.7
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 1.4e-67 260.4 200 62.0
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 4.0e-67 258.8 229 57.6
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 6.8e-67 258.1 199 64.3
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 8.8e-67 257.7 230 51.3
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 5.7e-66 255.0 225 54.2
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.3e-65 253.8 240 51.2
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 1.1e-64 250.8 237 52.7
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 1.8e-64 250.0 236 53.4
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 2.4e-64 249.6 240 54.2
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 2.4e-64 249.6 239 55.6
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 3.1e-64 249.2 240 51.2
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 7.0e-64 248.1 244 50.4
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 9.1e-64 247.7 238 53.8
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.6e-63 246.9 244 52.9
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.6e-63 246.9 238 53.4
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.6e-63 246.9 238 53.4
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 2.0e-63 246.5 234 52.6
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 2.7e-63 246.1 238 53.4
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 2.7e-63 246.1 239 52.7
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.5e-63 245.4 238 52.9
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.7e-62 243.4 211 56.9
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 1.7e-62 243.4 232 56.0
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 5.0e-62 241.9 232 53.4
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 5.0e-62 241.9 211 56.4
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 5.0e-62 241.9 244 51.6
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.1e-61 240.7 244 50.4
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.1e-61 240.7 244 50.4
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 1.9e-61 240.0 241 50.2
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.2e-61 239.2 232 53.4
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 9.4e-61 237.7 242 53.7
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 2.7e-60 236.1 231 49.4
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 3.6e-60 235.7 235 51.5
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 4.7e-60 235.3 215 54.0
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.0e-59 234.2 240 48.3
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 8.8e-59 231.1 221 54.8
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 3.4e-58 229.2 238 50.8
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 7.5e-58 228.0 238 50.8
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.3e-57 227.3 215 49.8
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 2.2e-57 226.5 211 56.9
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 2.2e-57 226.5 205 56.6
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 4.8e-57 225.3 231 47.2
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 6.3e-57 224.9 237 50.6
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 8.3e-57 224.6 238 50.4
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 1.4e-56 223.8 238 50.8
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 2.7e-55 219.5 217 48.8
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.3e-54 217.2 165 63.6
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 5.0e-54 215.3 239 46.0
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 8.6e-54 214.5 230 47.0
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 1.5e-53 213.8 213 49.8
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 1.9e-53 213.4 237 46.8
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 4.2e-53 212.2 235 46.4
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 2.8e-52 209.5 153 66.0
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 2.8e-52 209.5 234 48.3
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 3.6e-52 209.1 232 49.1
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 3.6e-52 209.1 238 48.3
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 3.6e-52 209.1 216 49.5
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 4.7e-52 208.8 238 47.9
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.0e-51 207.6 236 51.3
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 4.4e-50 202.2 154 61.7
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 3.7e-49 199.1 233 46.4
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 8.3e-49 198.0 233 45.5
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 8.3e-49 198.0 235 46.8
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 8.3e-49 198.0 238 45.8
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 1.4e-48 197.2 183 54.6
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 3.2e-48 196.1 232 44.0
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 3.2e-48 196.1 232 43.5
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 3.2e-48 196.1 232 44.0
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 4.1e-48 195.7 232 43.5
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 4.1e-48 195.7 232 43.5
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 5.4e-48 195.3 235 45.1
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 7.0e-48 194.9 147 61.9
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 1.6e-47 193.7 154 60.4
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 4.5e-47 192.2 235 45.1
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 7.8e-47 191.4 240 46.7
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 1.5e-45 187.2 230 42.2
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 7.3e-45 184.9 233 42.5
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 3.6e-44 182.6 234 41.9
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 1.0e-43 181.0 230 43.5
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 1.0e-43 181.0 233 41.6
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 1.8e-43 180.3 213 43.2
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 5.2e-43 178.7 198 44.4
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 6.8e-43 178.3 212 48.1
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 1.2e-42 177.6 194 46.4
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 1.5e-42 177.2 220 40.5
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 4.4e-42 175.6 215 46.0
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 7.5e-42 174.9 169 54.4
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 1.7e-41 173.7 217 42.4
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 2.2e-41 173.3 217 38.2
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 2.2e-41 173.3 215 45.1
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 3.7e-41 172.6 212 47.2
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 4.9e-41 172.2 192 47.4
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 4.9e-41 172.2 233 39.1
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 1.1e-40 171.0 206 38.8
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 6.0e-39 165.2 218 44.5
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.0e-38 164.5 155 49.7
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 1.7e-38 163.7 216 38.9
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 1.5e-37 160.6 216 44.9
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 1.5e-37 160.6 216 44.9
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 9.5e-37 157.9 178 43.3
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 3.6e-36 156.0 122 63.1
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.8e-35 151.8 217 44.7
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 1.5e-34 150.6 231 39.8
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 3.4e-34 149.4 221 33.5
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 4.4e-34 149.1 221 40.7
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 2.4e-32 143.3 194 38.1
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 3.0e-30 136.3 118 56.8
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 1.1e-29 134.4 139 46.0
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 7.3e-29 131.7 112 60.7
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.1e-28 128.3 208 42.3
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.7e-25 119.4 96 62.5
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 8.3e-25 118.2 80 68.8
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.0e-22 111.3 117 48.7
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 5.1e-22 109.0 88 54.5
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 1.1e-21 107.8 142 47.9
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.6e-21 105.5 144 45.8
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 1.2e-20 104.4 91 56.0
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.6e-20 104.0 198 36.4
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 2.1e-20 103.6 92 51.1
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 4.7e-20 102.4 150 32.7
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 2.2e-17 93.6 78 59.0
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 2.7e-15 86.7 80 50.0
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.5e-13 80.9 76 57.9
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 6.2e-12 75.5 99 39.4
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 6.2e-12 75.5 99 39.4
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 4.0e-11 72.8 97 35.1
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 1.2e-10 71.2 100 46.0
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 2.0e-10 70.5 54 61.1
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 1.7e-09 67.4 78 38.5
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 9.3e-08 61.6 67 50.7


User provided reference genes

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