Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 7.2e-232 807.0 439 100.0
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.5e-229 799.3 439 99.5
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 3.9e-177 625.2 454 74.9
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 2.0e-173 612.8 495 69.1
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 8.4e-172 607.4 439 74.7
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 6.7e-169 597.8 448 77.5
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 1.9e-168 596.3 446 76.5
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 6.2e-167 591.3 445 76.6
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 1.5e-165 586.6 439 74.9
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 7.1e-163 577.8 443 74.5
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 1.8e-161 573.2 447 70.5
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.9e-161 572.0 432 72.9
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 7.4e-160 567.8 448 69.9
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 1.2e-157 560.5 447 69.1
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 2.0e-157 559.7 443 70.4
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 2.6e-157 559.3 445 69.0
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 1.3e-156 557.0 471 65.0
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 1.3e-156 557.0 446 69.1
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 1.3e-156 557.0 463 70.8
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 2.9e-156 555.8 443 68.8
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.9e-156 555.8 443 68.8
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 8.4e-156 554.3 443 68.4
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.4e-155 553.5 443 68.6
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 1.9e-155 553.1 443 68.2
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.2e-155 552.4 443 68.8
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.6e-154 550.1 444 69.1
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 7.9e-154 547.7 443 67.9
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.3e-153 547.0 443 67.7
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 2.3e-153 546.2 443 66.6
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 8.7e-153 544.3 448 68.5
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.5e-152 543.5 449 68.6
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 7.4e-152 541.2 443 65.9
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 1.3e-151 540.4 448 70.5
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 8.2e-151 537.7 448 69.2
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.1e-150 537.3 436 68.8
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 5.3e-150 535.0 444 67.6
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 9.0e-150 534.3 442 70.6
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 9.0e-150 534.3 457 69.1
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 4.5e-149 531.9 450 70.4
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 5.9e-149 531.6 447 70.0
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 3.8e-148 528.9 447 66.7
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 3.2e-147 525.8 442 69.2
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 3.2e-147 525.8 442 69.2
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 4.2e-147 525.4 447 65.5
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 4.2e-147 525.4 446 65.2
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 4.2e-147 525.4 442 65.2
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 5.5e-147 525.0 443 63.7
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 5.5e-147 525.0 446 66.1
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 7.2e-147 524.6 447 65.1
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 9.4e-147 524.2 447 65.5
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.2e-146 523.9 441 71.7
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 2.1e-146 523.1 446 66.1
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.7e-146 522.7 445 67.2
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 4.6e-146 521.9 450 68.7
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 4.6e-146 521.9 446 65.5
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 6.1e-146 521.5 442 70.4
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 1.0e-145 520.8 451 64.7
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 1.8e-145 520.0 451 65.6
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 1.8e-145 520.0 447 65.5
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 8.8e-145 517.7 443 64.3
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 2.0e-144 516.5 455 67.5
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 3.7e-143 512.3 450 63.3
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 6.3e-143 511.5 439 63.8
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 8.2e-143 511.1 440 67.3
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 1.4e-142 510.4 449 63.0
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 4.1e-142 508.8 443 65.9
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 1.5e-141 506.9 448 62.3
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 2.6e-141 506.1 444 64.6
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 5.9e-141 505.0 429 66.2
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 7.7e-141 504.6 443 64.1
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.7e-140 503.4 440 66.1
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 1.7e-140 503.4 446 63.5
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.9e-139 500.0 442 64.3
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 5.5e-139 498.4 449 63.0
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 5.5e-139 498.4 451 62.7
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 2.1e-138 496.5 432 69.2
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 2.1e-138 496.5 493 59.2
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 1.8e-137 493.4 439 63.1
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 2.3e-137 493.0 444 66.4
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 8.8e-137 491.1 452 60.4
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 1.1e-136 490.7 452 60.2
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 1.5e-136 490.3 439 64.5
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 5.7e-136 488.4 441 64.4
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 7.4e-136 488.0 445 67.6
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.8e-134 483.4 444 63.1
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 5.3e-134 481.9 446 65.7
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 3.5e-133 479.2 457 60.6
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 5.9e-133 478.4 442 65.8
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 1.5e-131 473.8 452 58.6
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 1.6e-130 470.3 444 64.4
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 1.6e-130 470.3 445 64.5
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 3.0e-129 466.1 463 62.2
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.1e-128 464.2 444 61.7
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 2.6e-128 463.0 472 56.8
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.1e-126 457.6 442 63.6
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 4.1e-126 455.7 495 54.3
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 1.0e-124 451.1 442 62.9
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 2.2e-124 449.9 457 58.2
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 3.8e-124 449.1 457 58.4
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 1.9e-123 446.8 434 63.4
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 1.6e-122 443.7 461 57.9
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 1.8e-121 440.3 461 57.7
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 2.0e-120 436.8 446 62.6
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 2.6e-120 436.4 455 57.1
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 1.6e-117 427.2 432 62.5
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 8.5e-116 421.4 447 54.8
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 1.2e-112 411.0 446 60.8
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 3.4e-112 409.5 379 67.0
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 7.5e-112 408.3 442 59.0
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.2e-106 391.0 319 68.0
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 3.6e-106 389.4 382 60.2
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 4.4e-104 382.5 450 56.4
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 9.8e-104 381.3 443 55.5
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.1e-102 377.9 377 56.5
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 1.4e-102 377.5 486 49.2
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 6.1e-98 362.1 310 69.7
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 8.9e-97 358.2 430 52.6
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.2e-95 353.6 378 60.6
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.1e-91 341.3 475 50.1
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 3.4e-88 329.7 514 44.0
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 1.2e-85 321.2 450 48.4
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 3.1e-81 306.6 291 62.5
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 3.0e-76 290.0 291 58.4
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.5e-69 266.5 446 44.8
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 3.9e-68 263.1 446 44.8
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 1.1e-67 261.5 214 67.3
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 3.9e-60 236.5 169 69.8
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.3e-55 221.5 359 44.6
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.9e-54 217.6 134 79.9
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 8.4e-47 192.2 341 40.2
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 1.1e-46 191.8 264 45.8
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 1.1e-46 191.8 264 45.8
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.1e-35 155.2 197 51.3
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 3.7e-34 150.2 294 40.8
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 1.5e-32 144.8 460 29.3
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 4.5e-32 143.3 176 52.3
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 2.2e-31 141.0 69 95.7
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 2.9e-31 140.6 74 87.8
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 5.5e-30 136.3 246 42.7
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 6.1e-29 132.9 80 81.2
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 2.8e-26 124.0 68 82.4
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 9.1e-25 119.0 92 72.8
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 2.6e-24 117.5 117 52.1
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 3.8e-23 113.6 70 74.3
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 2.1e-21 107.8 142 43.0
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 2.1e-21 107.8 142 43.0
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 1.8e-20 104.8 137 50.4
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 8.8e-20 102.4 68 69.1
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 2.4e-17 94.4 510 24.5
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.0e-12 79.0 62 66.1
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 4.0e-12 77.0 91 52.7
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 1.2e-08 65.5 122 39.3
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 4.5e-08 63.5 69 52.2
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 5.5e-06 56.6 65 43.1
SGA_v2.0_scaffold14G06795 Striga asiatica HOM05D005384 ORTHO05D006477 5.5e-06 56.6 86 36.0
Nitab4.5_0009567g0040 Nicotiana tabacum HOM05D005384 ORTHO05D006477 9.4e-06 55.8 65 43.1


User provided reference genes

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