Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 3.3e-242 841.3 415 100.0
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 2.9e-206 721.8 411 84.4
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 1.5e-194 682.9 411 81.8
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 1.2e-191 673.3 411 78.1
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 2.9e-190 668.7 411 77.6
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.4e-189 666.4 411 78.1
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 4.6e-188 661.4 410 78.3
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 3.9e-187 658.3 411 77.6
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 3.9e-187 658.3 411 76.2
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 7.4e-186 654.1 411 76.4
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 2.2e-185 652.5 411 75.2
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 4.8e-185 651.4 416 75.2
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 6.3e-185 651.0 412 77.2
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 5.3e-184 647.9 411 76.9
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 6.9e-184 647.5 411 76.4
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 2.0e-183 646.0 413 76.3
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 4.5e-183 644.8 405 77.5
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 1.3e-182 643.3 402 77.4
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 6.5e-182 641.0 402 76.6
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 1.6e-180 636.3 411 75.2
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 8.2e-177 624.0 406 73.2
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.2e-174 615.9 412 74.5
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 6.5e-174 614.4 413 74.1
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.1e-173 613.6 410 73.4
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.5e-173 612.5 414 72.9
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 1.3e-169 600.1 415 70.1
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 1.3e-169 600.1 408 71.1
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 9.1e-168 594.0 411 72.3
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 2.5e-165 585.9 408 68.1
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 2.5e-165 585.9 409 69.7
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 9.4e-165 583.9 411 69.1
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 6.1e-164 581.3 404 70.0
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 2.3e-163 579.3 393 71.2
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 2.6e-162 575.9 393 70.7
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.6e-162 575.9 413 70.0
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 4.4e-162 575.1 393 70.7
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 6.3e-161 571.2 395 70.4
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 8.2e-161 570.9 402 69.4
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 1.1e-160 570.5 378 73.5
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 2.0e-159 566.2 393 68.7
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 2.7e-159 565.8 411 68.1
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 8.5e-158 560.8 410 66.6
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 9.4e-157 557.4 413 65.1
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 1.2e-156 557.0 407 65.6
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 3.4e-154 548.9 406 64.5
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 3.4e-154 548.9 417 65.2
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 3.4e-154 548.9 417 65.2
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 4.4e-154 548.5 402 64.9
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 3.5e-151 538.9 411 64.2
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 4.5e-151 538.5 405 66.2
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 7.7e-151 537.7 411 64.5
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 5.0e-150 535.0 407 63.4
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 5.5e-149 531.6 365 70.7
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 3.6e-148 528.9 410 62.2
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 1.8e-147 526.6 407 62.7
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 3.4e-146 522.3 414 60.4
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 2.8e-145 519.2 407 62.4
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.1e-144 517.3 411 61.8
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 1.8e-144 516.5 388 64.9
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.2e-143 513.8 411 61.8
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.5e-141 506.9 413 61.0
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 5.6e-141 505.0 322 75.5
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 2.8e-140 502.7 398 61.1
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 6.1e-140 501.5 394 63.7
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 1.2e-138 497.3 411 59.4
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 2.6e-138 496.1 389 63.5
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 1.7e-137 493.4 333 72.4
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 2.9e-137 492.7 412 59.2
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 2.9e-137 492.7 409 58.9
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 1.8e-136 490.0 406 60.1
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 2.4e-136 489.6 387 62.8
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 2.7e-135 486.1 406 63.5
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.3e-134 483.8 377 62.1
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 6.6e-134 481.5 377 61.8
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 6.6e-134 481.5 393 60.6
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 8.6e-134 481.1 393 60.6
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 1.1e-133 480.7 411 57.4
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 5.6e-133 478.4 405 59.8
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 2.8e-132 476.1 388 63.1
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 3.6e-132 475.7 412 57.0
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 2.0e-130 469.9 385 61.3
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 3.4e-130 469.2 413 55.4
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 4.4e-130 468.8 385 61.3
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 2.9e-129 466.1 389 62.0
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 3.7e-129 465.7 416 55.5
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 4.9e-129 465.3 412 57.5
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 9.2e-128 461.1 415 55.4
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 1.2e-127 460.7 388 61.9
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 1.6e-127 460.3 392 60.7
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 2.0e-127 459.9 403 58.6
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 1.0e-126 457.6 402 61.4
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 1.0e-126 457.6 420 57.4
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.7e-126 456.8 396 60.1
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 2.3e-126 456.4 398 60.6
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 3.0e-126 456.1 394 61.2
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 3.0e-126 456.1 392 59.4
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.9e-126 455.7 394 61.2
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 6.6e-126 454.9 354 62.7
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 6.6e-126 454.9 392 59.9
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 6.6e-126 454.9 398 60.3
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 8.6e-126 454.5 381 61.9
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 1.5e-125 453.8 413 54.5
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 4.3e-125 452.2 416 54.8
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 2.8e-124 449.5 391 60.4
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.4e-123 447.2 411 56.0
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 1.8e-123 446.8 355 63.4
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 3.1e-123 446.0 420 56.9
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 4.0e-123 445.7 388 59.8
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 6.8e-123 444.9 410 56.1
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.2e-122 444.1 410 55.9
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 2.7e-119 433.0 411 54.5
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 1.1e-117 427.6 384 54.4
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 3.3e-117 426.0 316 67.1
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 4.3e-117 425.6 393 53.4
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 4.3e-117 425.6 405 56.0
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.6e-116 423.7 390 53.6
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 2.1e-116 423.3 395 52.7
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 5.2e-115 418.7 390 52.6
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 6.8e-115 418.3 397 52.6
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 1.2e-114 417.5 395 52.2
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 1.5e-114 417.2 395 52.2
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 1.5e-114 417.2 395 52.2
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 3.4e-114 416.0 397 52.9
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 1.3e-113 414.1 379 52.8
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 4.6e-111 405.6 418 49.0
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 1.1e-109 401.0 356 55.6
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 1.1e-109 401.0 399 54.9
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 6.2e-108 395.2 415 50.1
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 5.8e-106 388.7 331 59.5
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 1.1e-104 384.4 400 51.8
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.2e-104 382.9 404 48.3
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 9.3e-104 381.3 414 49.0
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 2.1e-103 380.2 409 49.1
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 7.8e-103 378.3 404 48.0
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 8.7e-102 374.8 387 49.1
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 4.8e-100 369.0 367 51.2
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 4.0e-99 365.9 374 49.5
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 8.4e-97 358.2 380 47.9
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 5.4e-96 355.5 392 46.9
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 6.0e-95 352.1 291 60.5
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 2.8e-92 343.2 405 43.7
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.1e-91 339.7 373 46.6
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 3.5e-87 326.2 386 45.1
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 6.0e-87 325.5 421 43.5
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 3.1e-83 313.2 403 44.4
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 5.8e-82 308.9 291 56.0
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 4.9e-81 305.8 276 59.4
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 1.9e-77 293.9 368 43.8
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 1.9e-72 277.3 351 43.6
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 4.6e-71 272.7 388 39.2
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 4.6e-71 272.7 232 56.0
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.8e-70 270.8 292 52.4
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 9.4e-64 248.4 287 45.6
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 1.2e-58 231.5 231 51.9
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.2e-58 231.5 246 50.0
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 2.5e-56 223.8 351 39.0
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 4.2e-56 223.0 181 57.5
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.5e-48 197.2 216 50.5
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 1.0e-46 191.8 194 54.6
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 3.0e-46 190.3 177 55.9
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 2.0e-45 187.6 127 70.1
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 3.3e-45 186.8 173 57.2
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 9.7e-45 185.3 139 64.7
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 4.1e-43 179.9 307 38.1
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 2.7e-39 167.2 312 35.6
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 2.0e-37 161.0 135 56.3
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 1.4e-35 154.8 346 32.9
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 2.7e-34 150.6 151 50.3
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 6.1e-31 139.4 115 53.9
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.4e-21 107.1 76 65.8
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 4.9e-20 103.2 62 72.6
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 1.6e-15 88.2 367 22.6
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 2.3e-14 84.3 349 25.8
FAN12G3541 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.2e-11 73.9 255 28.2


User provided reference genes

Program Settings