Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030270 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D003833 2.0e-64 248.8 115 100.0
CSS0040475 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D003833 1.3e-34 149.8 83 83.1
CSS0045227 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D003833 1.3e-34 149.8 83 83.1
CSS0041809 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D003833 3.4e-32 141.7 83 79.5
CSS0038393 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 1.3e-26 123.2 58 87.9
CSS0019872 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D003833 4.8e-26 121.3 56 89.3
Rhsim01G0124600 Rhododendron simsii HOM05D000916 ORTHO05D003833 3.1e-25 118.6 56 83.9
CSS0008653 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 4.1e-25 118.2 58 87.9
TAR633G0084 Trochodendron aralioides HOM05D000916 ORTHO05D003833 9.0e-25 117.1 56 83.9
GSVIVG01001445001 Vitis vinifera HOM05D000916 ORTHO05D003833 9.0e-25 117.1 56 83.9
Aqoxy2G00215 Aquilegia oxysepala HOM05D000916 ORTHO05D003833 1.2e-24 116.7 56 80.4
CANSAT80G0128 Cannabis sativa HOM05D000916 ORTHO05D003833 1.2e-24 116.7 65 73.8
Cc04_g14700 Coffea canephora HOM05D000916 ORTHO05D003833 1.2e-24 116.7 56 82.1
CSS0002864 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 1.5e-24 116.3 52 92.3
Nn7g36359 Nelumbo nucifera HOM05D000916 ORTHO05D003833 1.5e-24 116.3 56 85.7
Cpa.g.sc197.25 Carica papaya HOM05D000916 ORTHO05D003833 2.0e-24 115.9 96 56.2
Haze_03096 Corylus avellana HOM05D000916 ORTHO05D003833 3.4e-24 115.2 56 82.1
Actinidia21532 Actinidia chinensis HOM05D000916 ORTHO05D003833 4.5e-24 114.8 56 82.1
Peaxi162Scf00071g00942 Petunia axillaris HOM05D000916 ORTHO05D003833 4.5e-24 114.8 52 88.5
Dinv43398 Davidia involucrata HOM05D000916 ORTHO05D003833 5.9e-24 114.4 56 80.4
Ciclev10031731m.g Citrus clementina HOM05D000916 ORTHO05D003833 7.6e-24 114.0 56 82.1
vmacro21144 Vaccinium macrocarpon HOM05D000916 ORTHO05D003833 7.6e-24 114.0 56 80.4
CiPaw.13G008700 Carya illinoinensis HOM05D000916 ORTHO05D003833 1.0e-23 113.6 56 80.4
COL.COLO4_12325 Corchorus olitorius HOM05D000916 ORTHO05D003833 1.0e-23 113.6 56 80.4
Hma1.2p1_0269F.1_g107780 Hydrangea macrophylla HOM05D000916 ORTHO05D003833 1.0e-23 113.6 56 80.4
MD07G1025100 Malus domestica HOM05D000916 ORTHO05D003833 1.0e-23 113.6 56 78.6
Duzib138G1830 Durio zibethinus HOM05D000916 ORTHO05D003833 1.3e-23 113.2 56 80.4
Oeu014600.1 Olea europaea HOM05D000916 ORTHO05D003833 1.3e-23 113.2 58 75.9
TWI73G1133 Tripterygium wilfordii HOM05D000916 ORTHO05D003833 1.3e-23 113.2 56 82.1
Atru.chr11.2554 Acer truncatum HOM05D000916 ORTHO05D003833 1.7e-23 112.8 56 82.1
arahy.Tifrunner.gnm1.ann1.YN40WG Arachis hypogaea HOM05D000916 ORTHO05D003833 1.7e-23 112.8 56 76.8
MD02G1299000 Malus domestica HOM05D000916 ORTHO05D003833 1.7e-23 112.8 56 78.6
Sc11g0008990 Simmondsia chinensis HOM05D000916 ORTHO05D003833 1.7e-23 112.8 56 80.4
Haze_03120 Corylus avellana HOM05D000916 ORTHO05D003833 2.2e-23 112.5 56 80.4
Glyma.11G157976 Glycine max HOM05D000916 ORTHO05D003833 2.2e-23 112.5 56 78.6
HanXRQChr05g0159011 Helianthus annuus HOM05D000916 ORTHO05D003833 2.2e-23 112.5 56 78.6
QL04p010554 Quercus lobata HOM05D000916 ORTHO05D003833 2.2e-23 112.5 56 80.4
Eucgr.G03276 Eucalyptus grandis HOM05D000916 ORTHO05D003833 2.9e-23 112.1 52 84.6
arahy.Tifrunner.gnm1.ann1.S8KRYV Arachis hypogaea HOM05D000916 ORTHO05D003833 3.8e-23 111.7 67 67.2
Prupe.2G025100 Prunus persica HOM05D000916 ORTHO05D003833 3.8e-23 111.7 56 78.6
Migut.N01808 Erythranthe guttata HOM05D000916 ORTHO05D003833 5.0e-23 111.3 56 78.6
MBI13_g36813_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D003833 5.0e-23 111.3 56 75.0
Hund02666 Selenicereus undatus HOM05D000916 ORTHO05D003833 5.0e-23 111.3 56 75.0
Gohir.A08G141100 Gossypium hirsutum HOM05D000916 ORTHO05D003833 6.5e-23 110.9 56 78.6
Gohir.D08G162200 Gossypium hirsutum HOM05D000916 ORTHO05D003833 6.5e-23 110.9 56 78.6
Gorai.004G168500 Gossypium raimondii HOM05D000916 ORTHO05D003833 6.5e-23 110.9 56 78.6
Nn2g15162 Nelumbo nucifera HOM05D000916 ORTHO05D003833 6.5e-23 110.9 56 80.4
Nitab4.5_0008059g0020 Nicotiana tabacum HOM05D000916 ORTHO05D003833 6.5e-23 110.9 52 84.6
Lj9A642T54 Lonicera japonica HOM05D000916 ORTHO05D003833 8.4e-23 110.5 52 84.6
Manes.06G024300 Manihot esculenta HOM05D000916 ORTHO05D003833 8.4e-23 110.5 53 81.1
Medtr3g034670 Medicago truncatula HOM05D000916 ORTHO05D003833 8.4e-23 110.5 56 76.8
ECA248G0906 Erigeron canadensis HOM05D000916 ORTHO05D003833 1.1e-22 110.2 56 76.8
Lj3g0008484 Lotus japonicus HOM05D000916 ORTHO05D003833 1.1e-22 110.2 56 76.8
CsaV3_7G030660 Cucumis sativus L. HOM05D000916 ORTHO05D003833 1.4e-22 109.8 56 75.0
Nitab4.5_0000087g0130 Nicotiana tabacum HOM05D000916 ORTHO05D003833 1.4e-22 109.8 52 82.7
Potri.009G054800 Populus trichocarpa HOM05D000916 ORTHO05D003833 1.4e-22 109.8 56 76.8
PGR031G0424 Punica granatum HOM05D000916 ORTHO05D003833 1.4e-22 109.8 56 76.8
Sabra09G0040100 Salix brachista HOM05D000916 ORTHO05D003833 1.4e-22 109.8 52 84.6
MELO3C023590.2 Cucumis melo HOM05D000916 ORTHO05D003833 1.9e-22 109.4 56 75.0
DCAR_031814 Daucus carota HOM05D000916 ORTHO05D003833 1.9e-22 109.4 56 75.0
Gohir.D12G102900 Gossypium hirsutum HOM05D000916 ORTHO05D003833 1.9e-22 109.4 56 76.8
Gorai.008G112100 Gossypium raimondii HOM05D000916 ORTHO05D003833 1.9e-22 109.4 56 76.8
THA.LOC104819108 Tarenaya hassleriana HOM05D000916 ORTHO05D003833 1.9e-22 109.4 88 51.1
Dinv07420 Davidia involucrata HOM05D000916 ORTHO05D003833 2.5e-22 109.0 56 75.0
Glyma.12G010600 Glycine max HOM05D000916 ORTHO05D003833 2.5e-22 109.0 56 76.8
Lsat_1_v5_gn_1_100221 Lactuca sativa HOM05D000916 ORTHO05D003833 2.5e-22 109.0 56 73.2
Sed0027440 Sechium edule HOM05D000916 ORTHO05D003833 2.5e-22 109.0 56 75.0
Thecc.01G403500 Theobroma cacao HOM05D000916 ORTHO05D003833 2.5e-22 109.0 56 75.0
Nitab4.5_0002187g0050 Nicotiana tabacum HOM05D000916 ORTHO05D003833 3.2e-22 108.6 56 75.0
Peaxi162Scf01108g00012 Petunia axillaris HOM05D000916 ORTHO05D003833 3.2e-22 108.6 52 82.7
Sabra16G0159200 Salix brachista HOM05D000916 ORTHO05D003833 3.2e-22 108.6 52 80.8
MSTRG.5048 Avicennia marina HOM05D000916 ORTHO05D003833 4.2e-22 108.2 56 71.4
ClCG09G004480 Citrullus lanatus HOM05D000916 ORTHO05D003833 4.2e-22 108.2 56 73.2
FvH4_7g01940 Fragaria vesca HOM05D000916 ORTHO05D003833 5.5e-22 107.8 56 69.6
FAN03G0804 Fragaria x ananassa HOM05D000916 ORTHO05D003833 5.5e-22 107.8 56 69.6
FAN03G2955 Fragaria x ananassa HOM05D000916 ORTHO05D003833 5.5e-22 107.8 56 69.6
FAN06G1297 Fragaria x ananassa HOM05D000916 ORTHO05D003833 5.5e-22 107.8 56 69.6
PSO339G1599 Papaver somniferum HOM05D000916 ORTHO05D003833 5.5e-22 107.8 56 73.2
Aa31LG2G15250 Aethionema arabicum HOM05D000916 ORTHO05D003833 7.2e-22 107.5 65 66.2
FAN01G1598 Fragaria x ananassa HOM05D000916 ORTHO05D003833 7.2e-22 107.5 56 69.6
PGSC0003DMG400006768 Solanum tuberosum HOM05D000916 ORTHO05D003833 9.3e-22 107.1 52 78.8
Phvul.005G035700 Phaseolus vulgaris HOM05D000916 ORTHO05D003833 1.2e-21 106.7 56 75.0
Solyc01g088090.3 Solanum lycopersicum HOM05D000916 ORTHO05D003833 1.2e-21 106.7 52 78.8
Sopen01g034960 Solanum pennellii HOM05D000916 ORTHO05D003833 1.2e-21 106.7 52 78.8
EL10Ac2g04388 Beta vulgaris HOM05D000916 ORTHO05D003833 1.6e-21 106.3 56 75.0
Lalb_Chr04g0263761 Lupinus albus HOM05D000916 ORTHO05D003833 1.6e-21 106.3 56 75.0
VMungo1080G0664 Vigna mungo HOM05D000916 ORTHO05D003833 1.6e-21 106.3 56 71.4
Duzib133G0052 Durio zibethinus HOM05D000916 ORTHO05D003833 2.1e-21 105.9 57 77.2
Nitab4.5_0006695g0060 Nicotiana tabacum HOM05D000916 ORTHO05D003833 2.1e-21 105.9 52 80.8
TPR.G14573 Trifolium pratense HOM05D000916 ORTHO05D003833 2.1e-21 105.9 56 75.0
CAN.G410.9 Capsicum annuum HOM05D000916 ORTHO05D003833 2.7e-21 105.5 52 78.8
AUR62023112 Chenopodium quinoa HOM05D000916 ORTHO05D003833 2.7e-21 105.5 56 73.2
Ca_14192_v3 Cicer arietinum L. HOM05D000916 ORTHO05D003833 3.5e-21 105.1 56 73.2
Migut.B01255 Erythranthe guttata HOM05D000916 ORTHO05D003833 3.5e-21 105.1 56 71.4
CARHR199640 Cardamine hirsuta HOM05D000916 ORTHO05D003833 7.9e-21 104.0 56 69.6
Gohir.A12G100000 Gossypium hirsutum HOM05D000916 ORTHO05D003833 7.9e-21 104.0 56 73.2
HPP92_011273 Vanilla planifolia HOM05D000916 ORTHO05D003833 7.9e-21 104.0 56 71.4
BcaNung04182 Brassica carinata HOM05D000916 ORTHO05D003833 1.0e-20 103.6 56 69.6
A02p02190 Brassica napus HOM05D000916 ORTHO05D003833 1.0e-20 103.6 56 69.6
C02p06440 Brassica napus HOM05D000916 ORTHO05D003833 1.0e-20 103.6 56 69.6
BolC2t06590H Brassica oleracea HOM05D000916 ORTHO05D003833 1.0e-20 103.6 56 69.6
BraA02t05192Z Brassica rapa HOM05D000916 ORTHO05D003833 1.0e-20 103.6 56 69.6
CiPaw.14G004400 Carya illinoinensis HOM05D000916 ORTHO05D003833 1.3e-20 103.2 49 83.7
RcHm_v2.0_Chr1g0318661 Rosa chinensis HOM05D000916 ORTHO05D003833 1.3e-20 103.2 56 67.9
HPP92_011294 Vanilla planifolia HOM05D000916 ORTHO05D003833 1.3e-20 103.2 53 75.5
Zm00001eb231810 Zea mays HOM05D000916 ORTHO05D003833 1.3e-20 103.2 56 69.6
RcHm_v2.0_Chr1g0318891 Rosa chinensis HOM05D000916 ORTHO05D003833 1.8e-20 102.8 56 67.9
THA.LOC104827431 Tarenaya hassleriana HOM05D000916 ORTHO05D003833 2.3e-20 102.4 56 71.4
THA.LOC104827432 Tarenaya hassleriana HOM05D000916 ORTHO05D003833 2.3e-20 102.4 56 71.4
THA.LOC104827434 Tarenaya hassleriana HOM05D000916 ORTHO05D003833 2.3e-20 102.4 56 71.4
THA.LOC109117201 Tarenaya hassleriana HOM05D000916 ORTHO05D003833 2.3e-20 102.4 56 71.4
MSTRG.17001 Avicennia marina HOM05D000916 ORTHO05D003833 3.0e-20 102.1 56 71.4
AUR62009433 Chenopodium quinoa HOM05D000916 ORTHO05D003833 3.0e-20 102.1 56 71.4
ATR0320G046 Amborella trichopoda HOM05D000916 ORTHO05D003833 3.9e-20 101.7 56 64.3
Thhalv10013390m.g Eutrema salsugineum HOM05D000916 ORTHO05D003833 3.9e-20 101.7 56 67.9
Glyma.09G226000 Glycine max HOM05D000916 ORTHO05D003833 3.9e-20 101.7 52 76.9
Os06g0354700 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D003833 5.1e-20 101.3 56 66.1
SGA_v2.0_scaffold119G32770 Striga asiatica HOM05D000916 ORTHO05D003833 5.1e-20 101.3 56 69.6
VMungo1127G2227 Vigna mungo HOM05D000916 ORTHO05D003833 5.1e-20 101.3 56 69.6
Actinidia20653 Actinidia chinensis HOM05D000916 ORTHO05D003833 6.7e-20 100.9 49 85.7
CDE09G0790 Ceratophyllum demersum HOM05D000916 ORTHO05D003833 6.7e-20 100.9 56 71.4
SalBow5G3829 Salvia bowleyana HOM05D000916 ORTHO05D003833 6.7e-20 100.9 56 69.6
AT5G13800 Arabidopsis thaliana HOM05D000916 ORTHO05D003833 8.7e-20 100.5 56 66.1
BcaB01g05336 Brassica carinata HOM05D000916 ORTHO05D003833 8.7e-20 100.5 56 67.9
A03p06180 Brassica napus HOM05D000916 ORTHO05D003833 8.7e-20 100.5 56 67.9
C03p07190 Brassica napus HOM05D000916 ORTHO05D003833 8.7e-20 100.5 56 67.9
BolC3t13220H Brassica oleracea HOM05D000916 ORTHO05D003833 8.7e-20 100.5 56 67.9
Sp6g30220 Schrenkiella parvula HOM05D000916 ORTHO05D003833 8.7e-20 100.5 56 67.9
unitig_61.g26130 Utricularia gibba HOM05D000916 ORTHO05D003833 8.7e-20 100.5 56 67.9
AL6G24420 Arabidopsis lyrata HOM05D000916 ORTHO05D003833 1.1e-19 100.1 56 66.1
Carub.0006s1198 Capsella rubella HOM05D000916 ORTHO05D003833 1.1e-19 100.1 56 66.1
BraA03t09952Z Brassica rapa HOM05D000916 ORTHO05D003833 1.5e-19 99.8 56 67.9
CDE08G0464 Ceratophyllum demersum HOM05D000916 ORTHO05D003833 2.5e-19 99.0 56 67.9
PGSC0003DMG400023127 Solanum tuberosum HOM05D000916 ORTHO05D003833 4.3e-19 98.2 53 69.8
unitig_0.g979 Utricularia gibba HOM05D000916 ORTHO05D003833 9.7e-19 97.1 56 66.1
Cre12.g514700 Chlamydomonas reinhardtii HOM05D000916 ORTHO05D003833 2.1e-13 79.3 45 66.7
Pp3c25_9360 Physcomitrium patens HOM05D000916 ORTHO05D003833 7.9e-13 77.4 47 61.7
PRCOL_00003308 Prasinoderma coloniale HOM05D000916 ORTHO05D003833 5.3e-09 64.7 49 53.1
MCO09G111 Micromonas commoda HOM05D000916 ORTHO05D003833 6.9e-09 64.3 56 44.6


User provided reference genes

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