Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 0.0e+00 1621.7 832 100.0
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 0.0e+00 1594.7 862 96.3
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 0.0e+00 1176.4 866 72.7
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 0.0e+00 1153.3 883 70.0
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 0.0e+00 1150.6 860 71.0
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 0.0e+00 1093.2 848 68.0
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 3.2e-297 1025.0 851 63.8
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 1.7e-290 1002.7 862 62.1
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 3.0e-287 991.9 831 63.5
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 3.9e-287 991.5 835 63.5
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 1.9e-286 989.2 808 63.4
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 7.7e-283 977.2 802 63.3
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 2.2e-282 975.7 797 64.5
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 8.5e-282 973.8 794 64.7
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 2.7e-280 968.8 874 60.4
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 1.8e-276 956.1 846 63.0
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 4.5e-275 951.4 811 62.3
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 5.9e-275 951.0 794 62.6
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 3.2e-273 945.3 854 60.9
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 3.2e-273 945.3 858 61.5
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 1.0e-271 940.3 858 61.2
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 8.8e-271 937.2 805 61.0
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 2.0e-270 936.0 803 62.5
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 2.6e-270 935.6 844 60.7
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 4.8e-269 931.4 830 61.3
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 1.4e-268 929.9 852 59.9
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 2.4e-268 929.1 804 60.6
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 2.0e-267 926.0 843 59.3
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 3.5e-267 925.2 791 61.4
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 1.0e-266 923.7 811 61.0
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 1.3e-266 923.3 811 61.5
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 2.2e-266 922.5 811 59.9
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 2.9e-266 922.2 804 60.8
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 5.0e-266 921.4 770 61.7
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 1.4e-265 919.8 801 59.6
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 2.5e-265 919.1 798 60.4
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 4.2e-265 918.3 838 60.0
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 1.2e-264 916.8 794 60.8
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 2.7e-264 915.6 802 60.1
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 2.3e-263 912.5 802 59.9
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 3.0e-263 912.1 842 58.3
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 2.0e-262 909.4 835 59.8
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 1.3e-261 906.7 798 60.0
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.8e-261 905.6 835 58.2
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 2.8e-261 905.6 796 60.2
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 6.3e-261 904.4 796 60.2
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 3.5e-259 898.7 793 61.4
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 5.9e-259 897.9 875 56.9
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 1.0e-258 897.1 859 57.2
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 1.7e-258 896.3 836 58.7
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 8.5e-258 894.0 794 59.7
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 1.5e-257 893.3 780 59.7
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 1.9e-257 892.9 805 59.1
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 6.1e-256 887.9 843 57.4
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 4.8e-253 878.2 792 58.6
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 4.8e-253 878.2 806 58.4
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 4.1e-252 875.2 755 62.4
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 9.1e-252 874.0 775 59.7
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 1.7e-250 869.8 798 58.4
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 3.2e-249 865.5 759 59.7
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 4.2e-249 865.1 807 57.9
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.6e-248 863.2 845 56.2
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 2.1e-248 862.8 799 57.1
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 2.6e-246 855.9 800 57.4
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 1.8e-244 849.7 862 54.8
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 4.5e-243 845.1 895 53.2
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 1.1e-241 840.5 800 55.2
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 1.2e-240 837.0 817 56.3
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 2.0e-238 829.7 658 63.2
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 6.3e-237 824.7 818 54.6
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 1.8e-236 823.2 852 53.9
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 5.4e-236 821.6 856 56.5
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 2.7e-235 819.3 794 55.9
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 2.3e-234 816.2 790 56.5
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 2.9e-234 815.8 810 54.2
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 1.2e-232 810.4 812 54.4
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 1.9e-228 796.6 802 53.7
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 5.4e-228 795.0 841 52.6
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 2.0e-227 793.1 796 54.0
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 1.5e-225 786.9 839 52.1
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 1.9e-225 786.6 848 52.1
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 5.6e-225 785.0 867 51.2
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 5.6e-225 785.0 795 53.2
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 9.5e-225 784.3 841 52.7
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 1.2e-224 783.9 841 52.0
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 2.8e-224 782.7 795 53.6
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 8.0e-224 781.2 557 68.8
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 1.1e-223 780.8 796 53.5
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 7.8e-219 764.6 826 54.2
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 1.9e-217 760.0 805 50.9
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 1.8e-215 753.4 807 50.4
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 1.7e-213 746.9 857 51.2
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 3.2e-212 742.7 794 53.4
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 2.4e-207 726.5 483 71.4
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 1.1e-201 707.6 816 48.2
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 7.6e-198 694.9 816 47.5
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 4.2e-196 689.1 721 50.3
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 2.5e-180 636.7 732 49.3
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.1e-179 633.6 622 57.6
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 3.0e-178 629.8 832 43.5
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 5.0e-173 612.5 830 42.7
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 2.2e-165 587.0 811 42.7
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 1.1e-161 574.7 497 63.4
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 5.7e-161 572.4 442 64.5
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 1.1e-159 568.2 587 51.8
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 1.9e-156 557.4 534 58.1
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 1.6e-155 554.3 738 42.7
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 1.0e-141 508.4 388 63.1
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 8.8e-138 495.4 775 38.3
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 6.8e-122 442.6 423 54.8
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 1.6e-115 421.4 484 52.5
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 3.7e-104 383.6 396 55.8
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 1.5e-97 361.7 476 47.9
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 1.1e-95 355.5 422 52.4
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 1.2e-89 335.5 422 51.4
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 2.1e-86 324.7 536 35.1
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 9.9e-73 279.3 234 58.1
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 2.0e-57 228.4 356 44.7
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 1.1e-52 212.6 195 53.3
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 1.4e-42 179.1 202 54.5
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 3.6e-38 164.5 479 26.3
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 2.6e-33 148.3 187 49.2
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 1.7e-27 129.0 202 38.6
BcaC09g50640 Brassica carinata HOM05D005319 ORTHO05D006632 3.1e-26 124.8 213 36.6
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 3.5e-25 121.3 80 68.8
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 4.2e-23 114.4 93 57.0
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 4.2e-23 114.4 94 55.3
SHI04990 Sapria himalayana HOM05D005319 ORTHO05D006632 9.8e-20 103.2 154 45.5
Lj1A1166G73 Lonicera japonica HOM05D005319 ORTHO05D006632 4.8e-19 100.9 366 32.0
Lj6A128G22 Lonicera japonica HOM05D005319 ORTHO05D006632 6.3e-19 100.5 172 43.0
SEGI_30773 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 2.3e-13 82.0 103 43.7
Cfa027011 Carpinus fangiana HOM05D002279 ORTHO05D002644 3.4e-12 78.2 300 28.7
Oeu016642.3 Olea europaea HOM05D001586 ORTHO05D001543 6.3e-11 73.9 67 53.7
C01p22550 Brassica napus HOM05D005319 ORTHO05D006632 1.8e-10 72.4 116 42.2
BolC1t02188H Brassica oleracea HOM05D005319 ORTHO05D006632 1.8e-10 72.4 116 42.2
Aqoxy7G02303 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 2.7e-09 68.6 348 23.9
MD00G1060100 Malus domestica HOM05D002279 ORTHO05D002644 3.5e-09 68.2 348 24.7
Aqoxy2G03747 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 4.5e-09 67.8 348 23.9
EL10Ac9g22556 Beta vulgaris HOM05D005319 ORTHO05D006632 4.5e-09 67.8 55 67.3
Phvul.001G164500 Phaseolus vulgaris HOM05D002279 ORTHO05D002644 4.5e-09 67.8 427 24.4
CANSAT01G3007 Cannabis sativa HOM05D002279 ORTHO05D002644 1.0e-08 66.6 468 23.3
EL10Ac6g13976 Beta vulgaris HOM05D005319 ORTHO05D006632 1.3e-08 66.2 83 49.4
CsaV3_6G007400 Cucumis sativus L. HOM05D002279 ORTHO05D002644 1.7e-08 65.9 445 22.0
Sc24g0003670 Simmondsia chinensis HOM05D002279 ORTHO05D002644 1.7e-08 65.9 356 23.9
arahy.Tifrunner.gnm1.ann1.CGPP17 Arachis hypogaea HOM05D002279 ORTHO05D002644 2.3e-08 65.5 421 23.3
Hund17863 Selenicereus undatus HOM05D002279 ORTHO05D002644 2.3e-08 65.5 482 22.4
Medtr7g098430 Medicago truncatula HOM05D002279 ORTHO05D002644 2.9e-08 65.1 425 22.4
arahy.Tifrunner.gnm1.ann1.UG1CCZ Arachis hypogaea HOM05D002279 ORTHO05D002644 3.8e-08 64.7 421 23.3
Eucgr.K01429 Eucalyptus grandis HOM05D002279 ORTHO05D002644 3.8e-08 64.7 337 23.1
MELO3C022388.2 Cucumis melo HOM05D002279 ORTHO05D002644 5.0e-08 64.3 445 22.2
PGR119G1284 Punica granatum HOM05D002279 ORTHO05D002644 5.0e-08 64.3 356 24.2
TPR.G20054 Trifolium pratense HOM05D002279 ORTHO05D002644 5.0e-08 64.3 415 23.9
Hma1.2p1_0586F.1_g183745 Hydrangea macrophylla HOM05D000033 ORTHO05D000913 8.6e-08 63.5 46 60.9
Hma1.2p1_0643F.1_g194445 Hydrangea macrophylla HOM05D000033 ORTHO05D000913 8.6e-08 63.5 46 60.9
CiPaw.03G270500 Carya illinoinensis HOM05D002279 ORTHO05D002644 3.3e-07 61.6 340 22.9
THA.LOC104816099 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 3.3e-07 61.6 474 22.8
Glyma.19G168100 Glycine max HOM05D002279 ORTHO05D002644 9.5e-07 60.1 324 24.4
Medtr8g088050 Medicago truncatula HOM05D002279 ORTHO05D002644 9.5e-07 60.1 578 21.3
SEGI_01277 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 9.5e-07 60.1 85 48.2
A03p55220 Brassica napus HOM05D005319 ORTHO05D041784 1.2e-06 59.7 47 63.8
C01p19550 Brassica napus HOM05D005319 ORTHO05D006632 1.2e-06 59.7 122 39.3
BraA03t14581Z Brassica rapa HOM05D005319 ORTHO05D041784 1.2e-06 59.7 47 63.8
Glyma.03G167000 Glycine max HOM05D002279 ORTHO05D002644 1.2e-06 59.7 314 23.9
Psat3g055080 Pisum sativum HOM05D002279 ORTHO05D002644 1.2e-06 59.7 311 25.4
Ca_08738_v3 Cicer arietinum L. HOM05D002279 ORTHO05D002644 1.6e-06 59.3 316 25.0
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 1.6e-06 59.3 37 75.7
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.6e-06 59.3 37 75.7
SEGI_13206 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 1.6e-06 59.3 50 58.0
Lj1g0017598 Lotus japonicus HOM05D002279 ORTHO05D002644 2.1e-06 58.9 337 24.9


User provided reference genes

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