Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 3.7e-241 837.8 429 100.0
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.9e-240 835.5 429 99.8
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 4.9e-217 757.7 429 90.2
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 1.1e-216 756.5 435 89.2
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 4.3e-213 744.6 430 86.7
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 7.4e-205 717.2 425 84.7
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 1.6e-204 716.1 430 84.0
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 2.4e-203 712.2 430 83.0
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.8e-201 704.9 426 81.5
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 3.5e-199 698.4 425 82.6
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 3.9e-198 694.9 424 82.8
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 3.9e-198 694.9 429 79.7
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.1e-197 693.3 429 81.1
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 5.6e-197 691.0 429 78.8
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 1.6e-196 689.5 429 80.0
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 1.6e-196 689.5 429 79.0
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.0e-193 680.2 421 81.9
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 1.7e-193 679.5 422 79.6
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 2.2e-193 679.1 429 80.4
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 2.9e-193 678.7 429 78.1
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 3.2e-192 675.2 425 79.5
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 5.5e-192 674.5 425 80.0
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.6e-191 672.9 432 78.7
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.0e-190 670.2 425 79.5
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 1.8e-190 669.5 425 78.8
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.0e-190 668.7 425 79.1
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 3.9e-190 668.3 425 79.1
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 1.1e-189 666.8 425 78.8
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 1.1e-189 666.8 425 79.1
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 1.9e-189 666.0 433 79.9
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 1.9e-189 666.0 429 76.7
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 3.3e-189 665.2 425 79.1
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 5.7e-189 664.5 425 77.4
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 6.3e-188 661.0 425 78.4
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.1e-187 658.7 425 76.7
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 6.9e-187 657.5 425 78.1
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 3.4e-186 655.2 425 76.9
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 3.4e-186 655.2 425 77.6
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 1.3e-185 653.3 425 78.4
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 1.7e-185 652.9 425 78.4
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 5.0e-185 651.4 425 77.4
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 6.5e-185 651.0 429 75.8
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 3.2e-184 648.7 429 76.0
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 4.2e-184 648.3 425 77.4
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 2.1e-183 646.0 425 76.9
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 3.6e-183 645.2 430 73.7
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 2.3e-182 642.5 425 75.5
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 3.9e-182 641.7 422 75.6
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 5.1e-182 641.3 428 76.2
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 8.8e-182 640.6 425 75.3
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 8.8e-182 640.6 425 75.8
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 7.4e-181 637.5 425 75.5
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 1.3e-180 636.7 429 74.1
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 2.2e-180 636.0 427 76.3
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 1.8e-179 632.9 430 74.0
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 1.8e-179 632.9 441 75.1
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 3.1e-179 632.1 425 74.4
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 6.9e-179 630.9 426 76.1
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 6.9e-179 630.9 422 74.4
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 9.1e-179 630.6 422 77.0
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.2e-178 630.2 425 75.8
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 2.6e-178 629.0 427 74.9
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 4.5e-178 628.2 429 75.5
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 5.9e-178 627.9 422 74.2
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 7.7e-178 627.5 422 74.2
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 6.5e-177 624.4 427 72.6
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 8.5e-177 624.0 434 74.7
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 8.5e-177 624.0 459 71.7
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 1.0e-174 617.1 426 73.5
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.3e-174 615.9 429 73.9
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 3.9e-174 615.1 458 71.2
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 2.8e-172 609.0 402 76.1
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 8.2e-172 607.4 427 72.6
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 5.3e-171 604.7 427 71.9
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 7.0e-171 604.4 425 72.5
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.5e-170 602.1 464 67.5
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 3.5e-170 602.1 423 74.5
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.0e-169 600.5 429 70.2
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 2.9e-169 599.0 427 72.6
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 8.5e-169 597.4 422 69.4
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 8.5e-169 597.4 423 71.4
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.2e-167 593.6 425 71.8
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 2.1e-167 592.8 422 69.2
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 4.8e-164 581.6 425 70.8
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 1.1e-163 580.5 427 69.8
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 2.0e-162 576.2 426 68.5
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 2.6e-162 575.9 425 68.5
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.6e-162 575.9 425 68.9
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 2.6e-162 575.9 426 69.2
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 3.5e-162 575.5 426 69.5
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 3.5e-162 575.5 430 68.6
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 4.5e-162 575.1 426 69.0
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 5.9e-162 574.7 427 68.6
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 1.7e-161 573.2 427 68.4
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 2.2e-161 572.8 426 68.3
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 7.2e-160 567.8 423 67.4
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 1.2e-157 560.5 383 74.2
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 1.2e-157 560.5 439 68.3
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 5.7e-157 558.1 425 68.9
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 2.2e-156 556.2 426 67.4
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 6.3e-156 554.7 426 66.0
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 4.5e-154 548.5 422 64.2
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 2.2e-153 546.2 425 66.1
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 2.2e-153 546.2 425 66.1
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 3.8e-153 545.4 426 66.7
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 3.8e-153 545.4 426 66.4
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 3.8e-153 545.4 324 84.3
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 1.5e-152 543.5 425 64.9
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 3.2e-152 542.3 425 65.9
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 9.4e-152 540.8 426 65.7
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 2.1e-151 539.7 426 64.6
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 3.6e-151 538.9 425 66.1
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 3.6e-151 538.9 425 64.0
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 6.1e-151 538.1 426 65.3
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 4.0e-150 535.4 425 64.7
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 1.2e-149 533.9 313 84.7
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 2.4e-147 526.2 381 70.9
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 9.5e-144 514.2 444 61.5
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.6e-143 513.5 426 62.4
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 3.6e-143 512.3 386 68.4
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 1.2e-141 507.3 360 69.2
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 2.8e-135 486.1 427 56.9
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 1.8e-134 483.4 427 57.1
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 8.9e-134 481.1 451 56.3
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 2.0e-130 469.9 424 56.1
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 3.6e-127 459.1 390 62.8
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 7.5e-125 451.4 433 61.9
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 4.6e-122 442.2 397 61.0
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 9.5e-120 434.5 430 53.7
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 1.4e-118 430.6 239 91.2
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 4.6e-114 415.6 241 87.6
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 7.3e-112 408.3 283 70.3
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 2.3e-105 386.7 355 60.0
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 4.8e-103 379.0 336 58.9
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 2.4e-102 376.7 356 59.0
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 2.5e-72 276.9 432 39.6
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.8e-71 273.5 214 66.8
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 2.2e-68 263.8 325 48.3
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 4.8e-63 246.1 192 66.7
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 3.1e-62 243.4 333 41.1
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 1.6e-58 231.1 374 43.0
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 1.8e-57 227.6 194 63.9
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 1.1e-51 208.4 194 58.8
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 1.9e-51 207.6 305 44.3
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 2.4e-46 190.7 251 48.2
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 3.1e-46 190.3 139 64.7
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 4.2e-35 153.3 313 33.2
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 4.7e-34 149.8 150 56.0
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 1.1e-30 138.7 105 69.5
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.2e-29 135.2 119 55.5
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 7.2e-27 125.9 125 51.2
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 3.4e-24 117.1 78 73.1
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 3.4e-24 117.1 78 73.1
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 2.2e-23 114.4 76 72.4
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 9.5e-19 99.0 66 77.3
Cfa025081 Carpinus fangiana HOM05D004649 ORTHO05D005446 1.8e-17 94.7 414 21.7
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 2.2e-15 87.8 48 87.5
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.3e-12 78.6 57 70.2
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 2.5e-11 74.3 53 75.5
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 7.3e-11 72.8 133 37.6
FvH4_6g52500 Fragaria vesca HOM05D004649 ORTHO05D005446 4.7e-10 70.1 48 68.8
Dinv09944 Davidia involucrata HOM05D002612 ORTHO05D002859 1.4e-09 68.6 44 81.8
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.8e-09 68.2 49 67.3
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 1.8e-09 68.2 49 67.3
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 2.3e-09 67.8 75 49.3
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 5.2e-09 66.6 213 26.8
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 2.0e-08 64.7 37 75.7
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 4.4e-08 63.5 213 26.8
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 4.4e-08 63.5 213 26.3
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 5.8e-08 63.2 213 26.3
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 7.5e-08 62.8 213 26.3
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 7.5e-08 62.8 213 26.3
Sp1g17970 Schrenkiella parvula HOM05D002716 ORTHO05D003324 7.5e-08 62.8 213 26.3
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 9.8e-08 62.4 213 26.3
BcaC08g47308 Brassica carinata HOM05D002716 ORTHO05D003324 9.8e-08 62.4 213 26.8
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 9.8e-08 62.4 213 26.8
C06p49910 Brassica napus HOM05D002716 ORTHO05D003324 9.8e-08 62.4 213 26.8
BolC6t40029H Brassica oleracea HOM05D002716 ORTHO05D003324 9.8e-08 62.4 213 26.8
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 9.8e-08 62.4 213 26.8
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 9.8e-08 62.4 213 26.3
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 9.8e-08 62.4 213 26.3
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 1.3e-07 62.0 213 26.3
BcaB03g12876 Brassica carinata HOM05D002716 ORTHO05D003324 1.3e-07 62.0 213 26.3
BcaC07g39026 Brassica carinata HOM05D002716 ORTHO05D003324 6.4e-07 59.7 213 25.8
C08p20020 Brassica napus HOM05D002716 ORTHO05D003324 6.4e-07 59.7 213 25.8
BolC8t49637H Brassica oleracea HOM05D002716 ORTHO05D003324 6.4e-07 59.7 213 25.8
Ah.00g000740 Amaranthus hybridus HOM05D002716 ORTHO05D003324 4.1e-06 57.0 134 26.1


User provided reference genes

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