Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 7.2e-232 807.4 570 100.0
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 9.8e-189 664.1 514 94.4
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 1.0e-132 478.0 384 65.4
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 3.6e-122 443.0 421 82.2
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 8.2e-119 431.8 455 78.2
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 2.4e-110 403.7 451 67.6
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 3.1e-110 403.3 466 68.2
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 5.3e-110 402.5 278 71.9
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 9.1e-110 401.7 497 70.2
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 1.2e-109 401.4 375 59.5
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 4.5e-109 399.4 300 68.3
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 7.7e-109 398.7 373 58.4
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 5.0e-108 396.0 312 64.7
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 1.1e-107 394.8 513 67.1
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.5e-107 394.4 508 69.5
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 1.9e-107 394.0 516 67.8
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 1.6e-106 391.0 318 64.5
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 1.2e-104 384.8 420 77.1
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 2.0e-104 384.0 412 77.7
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 3.3e-104 383.3 322 59.3
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 7.5e-104 382.1 324 59.6
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 9.7e-104 381.7 325 59.4
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.3e-103 381.3 277 68.6
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 1.3e-103 381.3 273 69.2
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 2.2e-103 380.6 459 71.2
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 1.4e-102 377.9 464 71.3
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 2.4e-102 377.1 279 68.8
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 4.5e-101 372.9 362 55.8
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 1.0e-100 371.7 453 70.4
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 6.5e-100 369.0 272 66.9
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 6.5e-100 369.0 230 73.5
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.5e-99 367.9 320 59.4
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 2.5e-99 367.1 448 72.3
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 3.2e-99 366.7 320 59.4
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 7.2e-99 365.5 311 62.1
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 7.2e-99 365.5 414 74.9
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 9.4e-99 365.2 454 70.3
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 1.6e-98 364.4 314 61.1
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 3.6e-98 363.2 454 70.7
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 6.1e-98 362.5 324 58.3
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 2.3e-97 360.5 419 73.3
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 2.3e-97 360.5 379 56.2
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 1.2e-96 358.2 519 63.6
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 5.7e-96 355.9 482 68.0
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 5.7e-96 355.9 320 57.5
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 5.7e-96 355.9 317 59.6
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 7.5e-96 355.5 424 67.2
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 9.8e-96 355.1 315 57.5
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 9.8e-96 355.1 318 56.9
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 2.2e-95 354.0 311 60.5
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 2.8e-95 353.6 315 57.1
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 3.7e-95 353.2 415 73.7
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 3.7e-95 353.2 323 58.5
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 3.7e-95 353.2 312 60.3
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 4.8e-95 352.8 323 57.9
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 6.3e-95 352.4 454 69.2
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 8.3e-95 352.1 315 60.6
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 8.3e-95 352.1 379 54.6
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 1.4e-94 351.3 450 70.7
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 1.6e-93 347.8 455 68.1
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 2.0e-93 347.4 299 60.2
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 4.5e-93 346.3 487 65.7
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 5.9e-93 345.9 200 80.5
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 5.9e-93 345.9 378 54.8
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 3.2e-91 340.1 289 57.1
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 7.2e-91 339.0 315 58.1
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 4.7e-90 336.3 223 72.6
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 3.0e-89 333.6 273 60.4
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 3.0e-89 333.6 347 52.4
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 4.0e-89 333.2 456 58.3
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 1.5e-88 331.3 450 67.3
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 1.5e-88 331.3 319 53.9
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 7.5e-88 328.9 316 57.3
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 2.8e-87 327.0 295 55.3
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 3.7e-87 326.6 464 65.1
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 2.7e-85 320.5 275 56.4
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 5.9e-85 319.3 447 67.8
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 3.8e-84 316.6 316 53.2
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 3.8e-84 316.6 367 49.0
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 1.9e-83 314.3 273 59.3
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 3.3e-83 313.5 275 57.8
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 5.6e-83 312.8 336 49.7
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 5.6e-83 312.8 280 55.7
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 2.3e-81 307.4 415 69.4
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 3.0e-81 307.0 274 56.2
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 5.2e-81 306.2 307 52.8
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 1.5e-80 304.7 303 52.8
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 4.6e-77 293.1 397 71.5
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 8.6e-76 288.9 274 54.7
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 2.5e-75 287.3 274 54.7
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 2.5e-75 287.3 273 53.8
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 4.3e-75 286.6 274 54.4
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 7.3e-75 285.8 296 50.7
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 9.5e-75 285.4 274 54.4
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 8.0e-74 282.3 318 48.7
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 2.3e-65 254.2 294 83.3
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 5.1e-60 236.5 142 77.5
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 2.2e-55 221.1 158 65.2
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 8.4e-55 219.2 154 67.5
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 8.4e-55 219.2 194 52.6
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 2.7e-45 187.6 197 46.7
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 5.8e-40 169.9 118 66.1
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 4.6e-37 160.2 237 87.3
Pp3c3_19290 Physcomitrium patens HOM05D007098 ORTHO05D008793 1.2e-32 145.6 192 37.0
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 3.2e-30 137.5 198 33.8
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 6.0e-29 133.3 174 45.4
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 1.2e-24 119.0 208 32.2
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 6.1e-13 80.1 82 48.8
Potri.006G166200 Populus trichocarpa HOM05D003056 ORTHO05D003422 2.4e-09 68.2 217 25.8
Aa31LG3G7460 Aethionema arabicum HOM05D000001 ORTHO05D009862 1.2e-08 65.9 151 30.5
Gohir.D12G193200 Gossypium hirsutum HOM05D000001 ORTHO05D000003 1.2e-08 65.9 152 28.3
PGR004G0301 Punica granatum HOM05D000001 ORTHO05D000003 2.0e-08 65.1 155 28.4
MD13G1249100 Malus domestica HOM05D003056 ORTHO05D003422 2.6e-08 64.7 178 24.2
Aa31LG8G12930 Aethionema arabicum HOM05D003056 ORTHO05D003422 1.7e-07 62.0 143 26.6
AL5G43620 Arabidopsis lyrata HOM05D003039 ORTHO05D008410 2.2e-07 61.6 110 31.8
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 2.2e-07 61.6 35 80.0
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 2.2e-07 61.6 145 25.5
Sabra06G0127800 Salix brachista HOM05D003056 ORTHO05D003422 2.2e-07 61.6 164 25.0
THA.LOC104819538 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 2.2e-07 61.6 183 26.8
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 2.9e-07 61.2 127 36.2
Rhsim12G0158500 Rhododendron simsii HOM05D003056 ORTHO05D003422 2.9e-07 61.2 145 22.8
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 3.8e-07 60.8 169 23.7
Ciclev10007460m.g Citrus clementina HOM05D003056 ORTHO05D003422 3.8e-07 60.8 163 23.9
Atru.ctg752_3.82 Acer truncatum HOM05D002453 ORTHO05D008746 6.5e-07 60.1 138 27.5
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 6.5e-07 60.1 35 80.0
AUR62019299 Chenopodium quinoa HOM05D000001 ORTHO05D000003 6.5e-07 60.1 160 21.9
FvH4_4g07880 Fragaria vesca HOM05D003056 ORTHO05D003422 6.5e-07 60.1 145 26.2
PSO063G7185 Papaver somniferum HOM05D003056 ORTHO05D003422 6.5e-07 60.1 193 23.8
AUR62023108 Chenopodium quinoa HOM05D004783 ORTHO05D005581 8.5e-07 59.7 152 25.7
Nn2g12946 Nelumbo nucifera HOM05D000001 ORTHO05D000003 8.5e-07 59.7 140 27.1
PSO017G1313 Papaver somniferum HOM05D003056 ORTHO05D003422 8.5e-07 59.7 139 25.9
RcHm_v2.0_Chr4g0401161 Rosa chinensis HOM05D003056 ORTHO05D003422 8.5e-07 59.7 145 26.2
THA.LOC104811557 Tarenaya hassleriana HOM05D000001 ORTHO05D009862 8.5e-07 59.7 152 28.9
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 1.1e-06 59.3 142 25.4
BcaB05g24023 Brassica carinata HOM05D000001 ORTHO05D009862 1.1e-06 59.3 231 25.5
ECA240G0024 Erigeron canadensis HOM05D003056 ORTHO05D003422 1.1e-06 59.3 160 21.9
MD07G1078100 Malus domestica HOM05D000001 ORTHO05D009373 1.1e-06 59.3 127 29.1
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 1.1e-06 59.3 151 22.5
Atru.chr7.865 Acer truncatum HOM05D003056 ORTHO05D003422 1.4e-06 58.9 165 23.0
AL3G52990 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 1.4e-06 58.9 145 22.8
FAN17G0903 Fragaria x ananassa HOM05D003056 ORTHO05D003422 1.4e-06 58.9 145 25.5
Gohir.D12G196300 Gossypium hirsutum HOM05D000001 ORTHO05D009862 1.4e-06 58.9 102 35.3
MD05G1179700 Malus domestica HOM05D000001 ORTHO05D000003 1.4e-06 58.9 122 32.0
COL.COLO4_37265 Corchorus olitorius HOM05D000001 ORTHO05D009862 1.9e-06 58.5 99 34.3
Gorai.008G210900 Gossypium raimondii HOM05D000001 ORTHO05D009862 1.9e-06 58.5 102 35.3
Prupe.3G037500 Prunus persica HOM05D003056 ORTHO05D003422 1.9e-06 58.5 214 23.8
Rhsim12G0158600 Rhododendron simsii HOM05D003056 ORTHO05D003422 1.9e-06 58.5 145 22.8
Potri.012G109300 Populus trichocarpa HOM05D000001 ORTHO05D009862 2.5e-06 58.2 96 38.5
EL10Ac2g04386 Beta vulgaris HOM05D004783 ORTHO05D005581 3.2e-06 57.8 172 25.0
Haze_09312 Corylus avellana HOM05D002453 ORTHO05D008746 3.2e-06 57.8 107 29.0
FvH4_5g32150 Fragaria vesca HOM05D003900 ORTHO05D005009 3.2e-06 57.8 127 29.1
MD16G1255600 Malus domestica HOM05D003056 ORTHO05D003422 3.2e-06 57.8 142 25.4
Sc12g0006230 Simmondsia chinensis HOM05D000001 ORTHO05D012157 3.2e-06 57.8 122 28.7
Gohir.A05G004100 Gossypium hirsutum HOM05D003056 ORTHO05D003422 4.2e-06 57.4 145 24.1
Gohir.D05G004500 Gossypium hirsutum HOM05D003056 ORTHO05D003422 4.2e-06 57.4 145 24.1
Gorai.009G004300 Gossypium raimondii HOM05D003056 ORTHO05D003422 4.2e-06 57.4 145 24.1
PGR044G2670 Punica granatum HOM05D000001 ORTHO05D009862 4.2e-06 57.4 108 36.1
QL01p032090 Quercus lobata HOM05D000001 ORTHO05D000003 4.2e-06 57.4 122 30.3
Solyc03g114010.3 Solanum lycopersicum HOM05D000001 ORTHO05D000003 4.2e-06 57.4 181 26.0
TPR.G32181 Trifolium pratense HOM05D000001 ORTHO05D000003 4.2e-06 57.4 124 27.4
TWI14G1162 Tripterygium wilfordii HOM05D000001 ORTHO05D009862 4.2e-06 57.4 108 32.4
COL.COLO4_31844 Corchorus olitorius HOM05D000001 ORTHO05D009259 5.5e-06 57.0 134 26.9
FAN05G5451 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.5e-06 57.0 121 30.6
Manes.14G044100 Manihot esculenta HOM05D000001 ORTHO05D009862 5.5e-06 57.0 102 35.3
Prupe.8G050400 Prunus persica HOM05D000001 ORTHO05D009373 7.2e-06 56.6 127 29.1
RcHm_v2.0_Chr7g0184831 Rosa chinensis HOM05D002453 ORTHO05D008746 7.2e-06 56.6 116 27.6
Sabra19G0096700 Salix brachista HOM05D000001 ORTHO05D009862 7.2e-06 56.6 96 38.5
PGSC0003DMG400025851 Solanum tuberosum HOM05D003056 ORTHO05D003422 7.2e-06 56.6 118 28.8
Thecc.03G081800 Theobroma cacao HOM05D000001 ORTHO05D012157 7.2e-06 56.6 131 30.5
CANSAT80G2044 Cannabis sativa HOM05D000001 ORTHO05D000003 9.4e-06 56.2 114 28.1
CANSAT80G2863 Cannabis sativa HOM05D000001 ORTHO05D000003 9.4e-06 56.2 114 28.1
Ca_15350_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 9.4e-06 56.2 124 27.4
Duzib093G2240 Durio zibethinus HOM05D000001 ORTHO05D000003 9.4e-06 56.2 151 25.2
FAN04G0755 Fragaria x ananassa HOM05D003900 ORTHO05D005009 9.4e-06 56.2 127 29.1
FAN05G3610 Fragaria x ananassa HOM05D000001 ORTHO05D000003 9.4e-06 56.2 126 28.6
Lsat_1_v5_gn_6_74000 Lactuca sativa HOM05D002007 ORTHO05D000355 9.4e-06 56.2 117 25.6
Rhsim05G0190200 Rhododendron simsii HOM05D000001 ORTHO05D009766 9.4e-06 56.2 109 28.4
RcHm_v2.0_Chr3g0457261 Rosa chinensis HOM05D000001 ORTHO05D000003 9.4e-06 56.2 121 32.2
Solyc01g107320.3 Solanum lycopersicum HOM05D003056 ORTHO05D003422 9.4e-06 56.2 121 28.9
Sopen01g049560 Solanum pennellii HOM05D003056 ORTHO05D003422 9.4e-06 56.2 121 28.9


User provided reference genes

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