Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 6.1e-164 580.9 319 100.0
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 2.0e-138 496.1 345 79.1
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 4.4e-138 495.0 345 80.0
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 2.1e-135 486.1 345 78.8
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 1.5e-133 479.9 345 77.4
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 3.3e-133 478.8 345 76.5
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.1e-132 476.1 345 75.9
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 2.1e-132 476.1 345 77.1
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 6.2e-132 474.6 345 75.9
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 1.4e-131 473.4 345 75.7
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 3.1e-131 472.2 345 75.1
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 4.0e-131 471.9 344 77.0
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 8.9e-131 470.7 346 77.2
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 4.4e-130 468.4 345 75.9
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 7.6e-130 467.6 345 75.1
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.3e-129 466.8 347 75.2
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 3.7e-129 465.3 335 77.0
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 2.4e-128 462.6 345 74.8
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 5.4e-128 461.5 345 73.6
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 5.4e-128 461.5 345 74.5
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.1e-127 459.5 345 72.8
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 2.7e-127 459.1 335 76.1
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 3.5e-127 458.8 345 73.3
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 2.3e-126 456.1 345 72.8
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 6.6e-126 454.5 341 74.5
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 8.6e-126 454.1 345 71.6
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 1.9e-125 453.0 345 74.2
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 3.3e-125 452.2 345 72.5
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 5.6e-125 451.4 345 73.9
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 7.3e-125 451.1 319 80.6
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.2e-124 450.3 337 73.3
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 2.1e-124 449.5 345 73.3
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 1.1e-123 447.2 345 71.0
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 1.8e-123 446.4 345 73.3
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.6e-122 442.6 345 71.6
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 1.7e-121 439.9 345 71.3
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 2.9e-121 439.1 345 71.3
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 3.8e-121 438.7 335 73.7
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 8.4e-121 437.6 345 71.6
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 8.4e-121 437.6 345 71.6
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 8.4e-121 437.6 342 72.2
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.4e-120 436.8 341 72.7
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 2.4e-120 436.0 370 68.4
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 7.1e-120 434.5 345 71.0
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 9.3e-120 434.1 345 71.0
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.2e-119 433.7 345 71.0
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 3.5e-119 432.2 341 71.8
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 7.8e-119 431.0 345 69.0
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.0e-118 429.1 315 74.9
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 8.7e-118 427.6 345 70.4
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.5e-117 426.8 345 70.1
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 1.9e-117 426.4 345 68.4
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 7.3e-117 424.5 345 67.8
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 4.8e-116 421.8 340 68.2
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 6.2e-116 421.4 345 68.7
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 1.8e-115 419.9 345 68.7
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 4.0e-115 418.7 345 68.4
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 9.0e-115 417.5 345 67.2
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 5.8e-114 414.8 343 68.5
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 1.4e-112 410.2 340 67.1
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 1.4e-112 410.2 345 66.7
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 7.9e-111 404.4 343 67.1
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 2.3e-110 402.9 319 70.8
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 1.5e-109 400.2 345 64.9
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 7.3e-109 397.9 345 66.4
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 9.6e-109 397.5 345 65.8
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 1.3e-108 397.1 345 66.7
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.1e-107 394.0 289 74.0
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.4e-106 389.0 341 64.8
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 4.9e-105 385.2 331 65.9
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 6.4e-105 384.8 345 65.5
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 3.2e-104 382.5 394 58.6
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 4.2e-104 382.1 345 64.9
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 5.4e-104 381.7 345 64.6
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 2.7e-103 379.4 328 66.8
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 5.1e-102 375.2 346 63.6
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 6.7e-102 374.8 345 62.9
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 7.4e-101 371.3 337 63.2
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 9.6e-101 370.9 345 63.8
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.3e-100 370.5 345 63.8
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 2.8e-100 369.4 340 62.6
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 1.4e-99 367.1 345 63.5
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 2.4e-99 366.3 345 62.0
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 5.3e-99 365.2 345 61.4
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.5e-98 363.6 345 61.7
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 1.5e-98 363.6 345 62.9
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 8.4e-97 357.8 287 68.6
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.9e-96 356.7 345 61.2
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.9e-96 356.7 345 61.2
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 5.5e-96 355.1 289 67.8
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 3.0e-94 349.4 347 59.1
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.1e-93 347.4 338 60.4
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 1.3e-92 344.0 373 57.9
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 1.3e-92 344.0 261 70.5
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.4e-91 340.5 345 58.0
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 3.1e-91 339.3 343 60.3
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 4.1e-91 339.0 345 58.6
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 2.6e-90 336.3 345 58.3
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 1.0e-89 334.3 319 63.6
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 5.0e-89 332.0 345 57.7
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.1e-88 330.9 366 56.3
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 1.4e-88 330.5 333 58.0
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 1.4e-88 330.5 322 63.4
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 6.1e-87 325.1 345 55.9
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 1.8e-86 323.6 345 56.8
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.9e-85 320.1 350 55.7
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.5e-85 319.7 348 54.9
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.6e-84 317.0 320 59.4
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.2e-84 316.6 347 55.9
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 2.2e-84 316.6 345 58.0
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 2.4e-83 313.2 348 55.7
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 5.3e-83 312.0 341 55.1
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 3.4e-82 309.3 336 55.4
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 1.7e-81 307.0 322 58.1
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 1.7e-81 307.0 322 58.1
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 8.5e-81 304.7 324 57.7
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.1e-80 304.3 340 55.9
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 7.2e-80 301.6 324 57.1
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 1.4e-78 297.4 320 56.6
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 6.7e-78 295.0 344 54.9
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 3.3e-77 292.7 326 56.4
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 1.4e-75 287.3 295 58.0
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 3.1e-75 286.2 317 58.0
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.2e-74 284.3 320 57.8
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 5.9e-74 282.0 345 54.8
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.7e-73 280.4 346 52.6
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 9.4e-72 274.6 334 49.1
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 1.6e-71 273.9 320 54.7
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.6e-71 272.7 312 57.1
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 4.7e-71 272.3 224 70.5
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 4.7e-71 272.3 346 50.3
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 6.1e-71 271.9 315 54.9
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 7.9e-71 271.6 317 56.2
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 1.8e-70 270.4 315 54.3
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 5.1e-70 268.9 225 70.7
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.1e-69 267.7 335 49.3
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 4.4e-69 265.8 224 69.6
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 9.7e-69 264.6 236 66.5
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 9.7e-69 264.6 315 54.3
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 9.7e-69 264.6 345 49.3
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.2e-68 263.5 341 49.3
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 2.2e-68 263.5 315 52.7
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 8.2e-68 261.5 243 65.4
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.8e-62 243.8 341 47.2
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 8.8e-62 241.5 263 55.5
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 7.0e-59 231.9 299 49.2
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 3.5e-58 229.6 334 47.0
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 3.5e-58 229.6 345 45.5
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 6.5e-57 225.3 138 91.3
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 8.5e-57 224.9 332 46.1
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 1.0e-54 218.0 269 50.9
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 1.8e-51 207.2 318 44.3
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 1.5e-48 197.6 339 39.2
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 2.5e-48 196.8 347 37.8
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 4.0e-46 189.5 148 71.6
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 2.6e-45 186.8 246 49.2
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 3.4e-45 186.4 257 46.3
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 1.3e-44 184.5 152 70.4
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 8.3e-44 181.8 217 52.1
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.7e-42 176.8 172 62.2
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 8.6e-41 171.8 343 34.7
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.0e-37 160.6 282 44.0
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 5.9e-34 149.1 184 45.1
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.5e-29 134.4 293 37.9
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 1.7e-28 131.0 295 37.3
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 1.1e-27 128.3 145 55.9
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 1.4e-22 111.3 217 40.1
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 3.4e-21 106.7 194 39.2
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 3.4e-21 106.7 194 39.2
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 1.7e-17 94.4 91 62.6
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 3.3e-16 90.1 55 89.1
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 6.8e-14 82.4 54 81.5
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 1.5e-13 81.3 111 50.5
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 1.7e-09 67.8 217 31.8
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 1.2e-07 61.6 95 47.4
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 3.6e-07 60.1 89 46.1


User provided reference genes

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