Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.6e-106 389.4 197 100.0
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.1e-102 376.7 197 97.0
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.5e-101 371.7 197 95.4
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.3e-81 305.8 196 79.6
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 5.1e-76 288.1 191 73.8
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 7.3e-75 284.3 191 73.3
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 3.6e-74 282.0 190 72.1
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.6e-72 275.8 194 70.6
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.7e-71 273.1 187 71.7
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 1.2e-69 266.9 189 67.2
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 2.7e-69 265.8 185 71.9
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 7.8e-69 264.2 185 68.1
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 3.9e-68 261.9 190 67.4
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 6.6e-68 261.2 194 64.9
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 2.5e-67 259.2 186 67.2
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 4.3e-67 258.5 191 65.4
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 9.6e-67 257.3 188 64.9
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 1.3e-66 256.9 192 63.5
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 3.6e-66 255.4 191 64.4
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.1e-65 253.8 191 63.9
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 1.1e-65 253.8 190 66.3
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 2.4e-65 252.7 195 62.6
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 4.0e-65 251.9 195 61.0
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 5.3e-65 251.5 191 63.4
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 1.2e-64 250.4 185 67.0
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.2e-64 250.4 188 63.3
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 2.0e-64 249.6 194 63.4
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 2.0e-64 249.6 197 62.4
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 3.4e-64 248.8 190 65.8
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 5.8e-64 248.1 187 63.1
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 7.6e-64 247.7 193 62.2
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 7.6e-64 247.7 189 62.4
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 9.9e-64 247.3 189 63.5
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 1.3e-63 246.9 192 63.0
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 1.3e-63 246.9 193 63.2
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.7e-63 246.5 194 62.9
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 2.2e-63 246.1 190 62.1
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 6.4e-63 244.6 188 63.3
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 6.4e-63 244.6 191 62.8
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 8.4e-63 244.2 192 62.5
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 1.1e-62 243.8 194 61.9
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 1.1e-62 243.8 193 61.7
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 2.4e-62 242.7 196 62.2
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 3.2e-62 242.3 194 61.9
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 4.2e-62 241.9 194 61.3
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 7.1e-62 241.1 193 59.1
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 7.1e-62 241.1 193 60.1
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 7.1e-62 241.1 193 60.6
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 9.3e-62 240.7 193 59.1
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 9.3e-62 240.7 191 60.7
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.2e-61 240.4 187 63.1
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.2e-61 240.4 195 61.0
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 1.6e-61 240.0 190 62.6
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 2.7e-61 239.2 189 63.0
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 2.7e-61 239.2 191 61.8
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 6.0e-61 238.0 195 60.5
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 7.8e-61 237.7 191 62.8
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 7.8e-61 237.7 194 57.2
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.3e-60 236.9 192 58.3
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 1.3e-60 236.9 195 61.5
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 3.0e-60 235.7 189 62.4
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 3.9e-60 235.3 194 60.3
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 5.1e-60 235.0 194 59.8
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 8.7e-60 234.2 190 57.9
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 8.7e-60 234.2 193 60.1
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 1.5e-59 233.4 239 50.2
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 1.5e-59 233.4 194 61.9
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 1.5e-59 233.4 192 59.9
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 1.5e-59 233.4 194 60.8
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 2.5e-59 232.6 187 62.6
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 7.3e-59 231.1 192 58.9
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 9.6e-59 230.7 191 60.2
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 1.3e-58 230.3 193 56.5
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 1.6e-58 229.9 193 58.0
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 2.1e-58 229.6 194 55.2
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 2.8e-58 229.2 193 58.0
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 4.8e-58 228.4 193 56.5
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 6.2e-58 228.0 189 59.3
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 6.2e-58 228.0 193 54.4
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 6.2e-58 228.0 192 57.3
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.1e-57 227.3 193 54.9
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 1.4e-57 226.9 193 58.0
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 3.1e-57 225.7 195 56.4
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 4.0e-57 225.3 189 55.0
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.2e-56 223.8 194 56.2
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 1.5e-56 223.4 194 57.2
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 7.6e-56 221.1 193 55.4
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 7.6e-56 221.1 191 59.2
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.9e-55 219.2 190 55.8
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.9e-55 219.2 191 58.6
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 4.9e-55 218.4 190 55.8
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 4.9e-55 218.4 194 56.7
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 8.4e-55 217.6 191 58.1
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.4e-54 216.9 194 57.7
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 1.4e-54 216.9 170 60.6
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.4e-54 216.9 189 56.1
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 7.1e-54 214.5 194 56.2
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 9.3e-54 214.2 145 68.3
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 2.1e-53 213.0 181 59.1
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 2.7e-53 212.6 187 56.1
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 2.7e-53 212.6 195 54.9
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 4.6e-53 211.8 188 55.3
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 6.0e-53 211.5 187 56.7
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 7.9e-53 211.1 192 53.6
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 7.9e-53 211.1 179 58.1
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 7.9e-53 211.1 188 55.9
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.8e-52 209.9 196 53.1
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 2.3e-52 209.5 187 55.6
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 2.3e-52 209.5 193 55.4
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 6.7e-52 208.0 191 56.5
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 8.7e-52 207.6 192 52.1
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 8.7e-52 207.6 193 54.4
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 1.1e-51 207.2 187 55.6
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 1.5e-51 206.8 196 55.6
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 5.6e-51 204.9 191 52.4
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 5.6e-51 204.9 188 54.3
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 7.4e-51 204.5 164 61.6
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 2.1e-50 203.0 187 55.1
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.7e-50 202.2 197 55.3
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 3.7e-50 202.2 188 54.8
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 8.1e-50 201.1 191 50.3
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 8.1e-50 201.1 188 52.1
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.4e-49 199.5 175 58.3
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 3.1e-49 199.1 192 50.0
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 5.3e-49 198.4 187 53.5
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 5.3e-49 198.4 193 49.2
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 2.0e-48 196.4 193 46.6
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.0e-48 196.4 192 52.6
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.6e-48 196.1 194 50.5
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 2.6e-48 196.1 194 49.0
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 7.6e-48 194.5 193 46.1
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 1.3e-47 193.7 192 52.1
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 1.7e-47 193.4 174 57.5
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.4e-46 190.3 194 47.9
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 3.2e-46 189.1 193 45.6
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 4.2e-46 188.7 193 45.6
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 4.2e-46 188.7 165 60.0
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.6e-45 186.8 140 60.7
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 1.0e-44 184.1 193 49.2
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.3e-44 183.7 188 47.9
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.8e-44 183.3 160 55.6
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 8.7e-44 181.0 188 48.9
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 3.3e-43 179.1 187 46.0
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 5.7e-43 178.3 191 46.6
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 4.8e-42 175.3 165 54.5
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 8.2e-42 174.5 159 54.1
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.4e-41 172.9 124 66.1
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.0e-40 169.9 165 53.3
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 5.8e-40 168.3 193 42.0
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.0e-39 165.2 193 44.6
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 6.5e-39 164.9 193 44.0
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.9e-38 163.3 180 49.4
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 2.5e-38 162.9 145 52.4
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.3e-36 157.1 193 42.5
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 3.9e-36 155.6 194 46.9
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 6.7e-36 154.8 158 53.2
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 3.3e-35 152.5 126 57.1
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 2.8e-34 149.4 188 41.5
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 1.1e-33 147.5 188 41.5
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 3.1e-33 146.0 193 41.5
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.0e-32 143.3 198 41.9
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 8.5e-31 137.9 128 51.6
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 3.9e-28 129.0 107 58.9
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 7.7e-24 114.8 194 36.6
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 8.5e-23 111.3 194 40.7
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 7.2e-22 108.2 114 49.1
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.1e-21 106.7 192 34.4
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 4.1e-17 92.4 192 33.3
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 4.1e-17 92.4 84 54.8
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.0e-16 90.1 102 50.0
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.0e-15 87.8 165 33.3
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 3.8e-15 85.9 94 43.6
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 1.5e-14 84.0 182 32.4
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 1.6e-13 80.5 206 26.7
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.4e-12 77.4 78 47.4
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 4.4e-11 72.4 161 34.2
Pp3c23_8370 Physcomitrium patens HOM05D003838 ORTHO05D004444 2.2e-07 60.1 162 30.9
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.5e-06 56.6 95 37.9
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 5.5e-06 55.5 81 40.7


User provided reference genes

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