Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 1.6e-210 735.7 352 100.0
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 7.4e-195 683.7 352 92.6
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 2.2e-191 672.2 350 88.9
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 2.5e-190 668.7 339 92.3
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 5.0e-183 644.4 374 83.2
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 3.2e-182 641.7 352 86.6
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 4.7e-181 637.9 352 84.1
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 1.8e-180 636.0 351 84.0
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 1.5e-179 632.9 352 84.1
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 3.3e-179 631.7 352 83.0
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 7.4e-179 630.6 352 83.5
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 3.7e-178 628.2 352 84.1
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 1.1e-177 626.7 352 81.0
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 1.8e-177 625.9 350 79.4
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 2.4e-177 625.5 352 82.1
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 9.1e-177 623.6 352 82.4
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 9.1e-177 623.6 352 82.7
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 2.6e-176 622.1 352 81.8
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 3.5e-176 621.7 352 81.8
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.0e-175 620.2 352 81.2
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 1.3e-175 619.8 352 82.7
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 1.3e-175 619.8 353 81.6
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 2.2e-175 619.0 352 80.7
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 5.0e-175 617.8 361 79.8
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.1e-174 616.7 319 90.9
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 2.5e-174 615.5 352 79.8
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 2.7e-173 612.1 355 80.0
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 8.0e-173 610.5 350 80.3
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.4e-172 609.8 350 79.7
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 6.7e-172 607.4 352 80.7
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 8.8e-172 607.1 353 80.7
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 8.8e-172 607.1 352 79.3
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 1.5e-171 606.3 340 83.2
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 5.7e-171 604.4 338 84.3
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 5.7e-171 604.4 352 80.4
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 7.4e-171 604.0 352 81.2
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 2.2e-170 602.4 352 78.7
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 3.7e-170 601.7 350 78.9
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 4.8e-170 601.3 339 81.1
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 4.8e-170 601.3 352 79.5
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 6.3e-170 600.9 352 80.4
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 1.1e-169 600.1 352 80.4
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 2.4e-169 599.0 350 80.9
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 2.4e-169 599.0 352 79.8
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 5.3e-169 597.8 350 78.0
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 1.6e-168 596.3 352 79.5
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 2.6e-168 595.5 352 79.0
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 2.6e-168 595.5 352 79.0
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 4.5e-168 594.7 352 79.5
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 4.5e-168 594.7 352 79.8
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 4.5e-168 594.7 352 79.0
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 5.9e-168 594.3 352 79.5
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 7.7e-168 594.0 350 77.7
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 7.7e-168 594.0 350 77.7
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 1.7e-167 592.8 351 79.5
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 3.8e-167 591.7 350 78.0
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 6.5e-167 590.9 352 78.7
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 3.2e-166 588.6 350 76.6
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 1.2e-165 586.6 354 78.0
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 3.6e-165 585.1 352 77.6
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 1.0e-164 583.6 352 78.1
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 3.0e-164 582.0 351 78.3
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 3.0e-164 582.0 352 77.3
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 4.0e-164 581.6 352 77.8
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 2.0e-163 579.3 347 76.9
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 5.7e-163 577.8 352 76.7
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 7.5e-163 577.4 352 77.8
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 1.3e-162 576.6 352 77.3
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 1.3e-162 576.6 352 77.3
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.7e-162 576.2 352 79.5
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 2.8e-162 575.5 352 77.0
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 2.8e-162 575.5 352 75.9
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 6.3e-162 574.3 339 78.8
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 2.4e-161 572.4 352 75.6
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 2.4e-161 572.4 338 78.7
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 7.0e-161 570.9 319 82.1
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 7.0e-161 570.9 339 78.8
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 1.6e-160 569.7 351 77.5
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 2.7e-160 568.9 352 76.1
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 1.3e-159 566.6 352 75.6
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 2.2e-159 565.8 338 80.8
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 2.5e-158 562.4 355 74.9
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 1.6e-157 559.7 352 72.2
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 2.7e-157 558.9 358 74.6
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 2.7e-157 558.9 408 65.4
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 4.0e-156 555.1 352 75.0
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 4.4e-155 551.6 346 76.9
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 5.7e-155 551.2 352 74.4
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 8.3e-154 547.4 352 74.1
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 5.4e-153 544.7 352 73.9
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 1.2e-152 543.5 383 68.4
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 3.3e-150 535.4 352 72.2
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 4.2e-150 535.0 319 78.7
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 5.2e-148 528.1 319 76.2
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 7.5e-147 524.2 293 81.2
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 1.7e-146 523.1 338 69.8
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 1.9e-142 509.6 299 77.6
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 9.5e-142 507.3 296 77.7
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 9.5e-142 507.3 296 77.7
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 2.3e-140 502.7 353 65.2
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 1.4e-137 493.4 296 78.4
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 1.4e-137 493.4 353 64.9
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 2.3e-135 486.1 396 62.6
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 2.3e-135 486.1 319 73.4
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 6.6e-135 484.6 323 72.4
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 3.4e-131 472.2 306 71.9
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 1.1e-129 467.2 353 68.3
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 1.4e-129 466.8 353 61.2
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 4.6e-128 461.8 269 78.8
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 9.9e-123 444.1 255 80.4
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 1.3e-119 433.7 271 76.4
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 1.4e-108 397.1 223 83.9
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.9e-105 386.7 201 90.0
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 5.5e-97 358.6 212 81.1
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 9.0e-92 341.3 180 86.1
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 4.6e-88 328.9 358 43.6
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 1.3e-87 327.4 356 43.3
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 1.9e-86 323.6 231 64.9
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 3.7e-85 319.3 203 72.4
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 2.2e-77 293.5 355 41.4
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.0e-75 287.0 158 80.4
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 1.8e-68 263.8 199 64.3
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 2.3e-63 246.9 144 79.9
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 8.2e-53 211.8 371 31.5
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.8e-52 210.7 126 76.2
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.1e-49 201.4 126 77.8
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 4.4e-46 189.5 108 79.6
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 3.2e-41 173.3 87 90.8
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 4.2e-41 172.9 129 66.7
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 9.8e-38 161.8 118 64.4
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 2.4e-28 130.6 339 27.1
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 3.5e-27 126.7 70 82.9
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 5.9e-27 125.9 96 65.6
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 7.8e-27 125.6 76 80.3
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 3.9e-26 123.2 82 63.4
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 5.0e-26 122.9 72 72.2
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 8.3e-21 105.5 214 29.0
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 2.8e-16 90.5 355 24.5
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 4.0e-15 86.7 58 67.2
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.0e-14 84.3 54 77.8
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 4.4e-14 83.2 44 84.1
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 7.5e-14 82.4 145 37.2
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 2.9e-13 80.5 85 49.4
Peaxi162Scf00362g00643 Petunia axillaris HOM05D000347 ORTHO05D001997 1.1e-12 78.6 227 23.3
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 1.0e-10 72.0 42 73.8
Glyma.12G033100 Glycine max HOM05D000347 ORTHO05D001997 1.7e-10 71.2 213 21.6
MD10G1124300 Malus domestica HOM05D000347 ORTHO05D001997 3.0e-10 70.5 175 21.1
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 3.9e-10 70.1 72 50.0
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 5.1e-10 69.7 48 68.8
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 4.3e-09 66.6 168 33.9
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.6e-08 64.7 30 90.0
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 3.6e-08 63.5 41 63.4
Nitab4.5_0000283g0360 Nicotiana tabacum HOM05D000347 ORTHO05D001997 3.6e-08 63.5 149 22.1
Cre02.g109150 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 4.7e-08 63.2 57 45.6
Nitab4.5_0003914g0030 Nicotiana tabacum HOM05D000347 ORTHO05D001997 4.7e-08 63.2 149 22.1
Glyma.11G091500 Glycine max HOM05D000347 ORTHO05D001997 8.1e-08 62.4 143 23.8
Migut.B00081 Erythranthe guttata HOM05D000347 ORTHO05D001997 1.8e-07 61.2 146 23.3
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 5.2e-07 59.7 240 19.2
FvH4_2g01180 Fragaria vesca HOM05D000347 ORTHO05D001997 8.9e-07 58.9 148 21.6
FAN24G3508 Fragaria x ananassa HOM05D000347 ORTHO05D001997 8.9e-07 58.9 148 21.6
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 1.2e-06 58.5 46 56.5
FAN15G3271 Fragaria x ananassa HOM05D000347 ORTHO05D001997 2.0e-06 57.8 148 20.9
FAN20G0646 Fragaria x ananassa HOM05D000347 ORTHO05D001997 2.0e-06 57.8 148 20.9
TWI79G0818 Tripterygium wilfordii HOM05D000347 ORTHO05D001997 2.0e-06 57.8 165 25.5
CAN.G588.81 Capsicum annuum HOM05D000347 ORTHO05D001997 4.4e-06 56.6 153 22.9
FAN27G1321 Fragaria x ananassa HOM05D000347 ORTHO05D001997 7.6e-06 55.8 148 21.6
Zm00001eb165440 Zea mays HOM05D005151 ORTHO05D006322 7.6e-06 55.8 178 25.8
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 9.9e-06 55.5 178 25.3


User provided reference genes

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