Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1884.0 939 100.0
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1871.7 939 99.6
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1595.5 962 83.7
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1516.9 965 80.3
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1480.3 1023 75.1
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1434.5 909 78.5
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1418.3 932 76.4
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1412.5 933 76.1
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1408.7 962 76.1
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1395.9 913 75.8
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1385.2 914 76.1
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1380.9 929 74.6
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1380.2 914 76.0
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1379.0 908 75.8
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1375.5 946 73.8
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1373.6 946 73.7
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1373.6 910 75.4
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1372.1 913 75.2
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1372.1 966 72.6
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1369.0 914 74.9
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1367.1 913 75.6
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1365.5 910 75.9
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1363.2 910 74.6
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1359.4 964 72.1
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1358.2 917 75.5
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1357.4 898 75.7
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1357.4 955 72.1
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1351.3 923 74.1
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1350.5 990 70.3
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1350.1 914 74.4
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1349.3 964 71.7
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1349.0 920 74.5
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1344.3 907 74.9
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1342.8 960 71.8
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1340.5 890 75.5
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1337.4 893 75.8
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1337.4 960 72.1
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1336.2 912 73.6
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1336.2 964 71.5
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1336.2 903 74.1
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1335.9 888 74.9
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1335.1 957 72.8
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1333.9 930 73.8
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1333.5 936 73.6
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1330.1 889 74.7
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1329.7 962 71.5
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1328.2 962 71.3
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1325.8 906 73.7
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1322.8 962 70.9
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1321.6 964 71.6
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1318.1 967 70.1
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1315.8 965 70.9
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1313.9 908 72.8
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1312.0 961 70.0
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1311.6 959 69.4
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1305.4 961 69.3
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1294.6 914 72.6
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1286.9 1009 66.3
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1282.7 877 73.3
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1282.3 924 71.1
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1274.6 908 72.2
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1273.1 909 70.7
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1266.5 951 69.8
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1264.6 898 72.5
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1236.5 813 76.5
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1235.3 843 74.0
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1234.9 815 76.8
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1216.1 887 68.8
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1208.0 912 69.0
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1201.0 879 69.5
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1199.5 910 67.5
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1198.3 929 67.1
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1190.3 913 66.4
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1189.1 885 67.5
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 0.0e+00 1188.7 959 65.4
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1184.1 876 68.4
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1183.3 914 65.6
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1180.2 884 67.6
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1178.7 880 68.1
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1170.2 884 67.4
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 0.0e+00 1169.5 901 65.5
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1157.5 907 65.4
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1151.0 887 65.1
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 0.0e+00 1150.6 910 66.6
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 0.0e+00 1147.5 891 64.6
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1142.9 894 65.1
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1142.1 863 67.2
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1131.3 888 64.2
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1128.2 892 64.6
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 0.0e+00 1127.1 887 64.4
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1124.4 903 63.8
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1111.3 922 64.8
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1079.7 910 62.1
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 1.7e-310 1069.3 808 67.0
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 4.7e-289 998.0 767 68.1
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 7.8e-284 980.7 634 78.9
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.3e-283 979.9 645 77.1
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 8.6e-283 977.2 714 68.1
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.7e-275 953.0 610 78.5
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 1.4e-269 933.3 878 53.9
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 9.0e-256 887.5 930 50.3
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 5.3e-248 861.7 684 68.0
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 5.3e-248 861.7 602 73.1
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 6.5e-214 748.4 514 73.5
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 1.4e-208 730.7 876 49.3
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 7.5e-202 708.4 913 45.9
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 5.5e-197 692.2 560 64.5
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 1.5e-194 684.1 627 55.5
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 2.8e-188 663.3 724 48.9
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 1.0e-187 661.4 445 74.8
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 2.0e-178 630.6 534 61.0
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 1.7e-174 617.5 400 75.0
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 5.6e-173 612.5 417 73.9
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 2.0e-146 524.2 337 77.2
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 7.2e-112 409.5 274 73.7
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 3.6e-111 407.1 266 77.4
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 7.7e-106 389.4 282 68.4
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 4.5e-90 337.0 216 78.2
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.2e-82 312.4 338 54.4
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 1.9e-80 305.1 238 63.4
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 1.5e-56 225.7 217 50.2
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 2.0e-53 215.3 172 64.5
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 1.9e-48 198.7 248 48.0
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 4.0e-46 191.0 282 45.7
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 6.2e-39 167.2 222 50.0
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 6.4e-36 157.1 98 79.6
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 7.4e-24 117.1 272 33.5
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 3.7e-23 114.8 82 68.3
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 2.4e-22 112.1 59 86.4
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.6e-18 99.4 58 84.5
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 6.7e-17 94.0 69 68.1
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 4.8e-15 87.8 416 24.0
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 1.0e-09 70.1 261 27.6
QL06p031927 Quercus lobata HOM05D005896 ORTHO05D007250 1.6e-07 62.8 51 66.7
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 4.8e-07 61.2 113 39.8


User provided reference genes

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