Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 0.0e+00 1223.8 608 100.0
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 1.3e-308 1062.4 602 87.5
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 7.8e-285 983.4 603 82.1
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 9.5e-283 976.5 553 86.1
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 1.4e-281 972.6 595 81.3
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 1.7e-276 955.7 568 82.9
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 4.7e-274 947.6 574 81.0
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 1.8e-273 945.7 578 80.4
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 6.9e-273 943.7 588 80.3
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 9.9e-272 939.9 579 80.7
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 6.4e-271 937.2 598 77.1
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 6.4e-271 937.2 560 82.3
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 1.9e-270 935.6 600 75.7
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 7.8e-269 930.2 592 77.4
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 1.3e-268 929.5 555 81.1
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 3.0e-268 928.3 587 77.5
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 3.9e-268 927.9 587 77.5
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 3.3e-267 924.9 581 78.5
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 5.6e-267 924.1 672 70.4
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 2.8e-266 921.8 551 80.8
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 6.2e-266 920.6 564 78.4
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 6.9e-265 917.1 556 80.2
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 1.5e-264 916.0 576 79.0
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 1.5e-264 916.0 556 79.9
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 2.0e-264 915.6 588 76.0
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 2.0e-264 915.6 576 78.8
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 2.6e-264 915.2 572 77.8
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 4.5e-264 914.4 553 81.0
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 7.6e-264 913.7 551 80.2
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 9.9e-264 913.3 657 70.8
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 1.3e-263 912.9 575 77.9
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 1.7e-263 912.5 591 76.1
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 1.1e-262 909.8 575 77.9
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 5.4e-262 907.5 560 79.8
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 7.1e-262 907.1 551 80.8
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 1.6e-261 906.0 538 82.0
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 3.5e-261 904.8 560 80.4
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 6.0e-261 904.0 567 76.9
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 7.9e-261 903.7 554 78.2
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 7.9e-261 903.7 567 76.7
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 1.8e-260 902.5 622 73.2
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 1.8e-260 902.5 591 75.8
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 1.8e-260 902.5 562 78.5
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 1.9e-259 899.0 588 74.3
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 3.3e-259 898.3 557 78.1
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 9.6e-259 896.7 592 75.0
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 2.1e-258 895.6 548 79.7
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 3.1e-257 891.7 554 77.8
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 9.0e-257 890.2 617 73.4
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 2.0e-256 889.0 559 77.3
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 6.4e-255 884.0 585 74.5
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 8.4e-255 883.6 563 76.7
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 2.1e-253 879.0 592 73.1
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 2.1e-250 869.0 588 73.8
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 8.1e-250 867.1 564 76.6
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 1.0e-247 860.1 612 71.2
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 1.1e-246 856.7 630 72.2
TAR626G1235 Trochodendron aralioides HOM05D002380 ORTHO05D008286 1.3e-242 843.2 513 82.5
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 1.2e-240 836.6 547 74.4
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 1.5e-240 836.3 551 72.4
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 2.6e-240 835.5 551 72.6
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 2.6e-240 835.5 593 70.5
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 2.6e-240 835.5 551 73.7
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 3.4e-240 835.1 602 70.1
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 2.2e-239 832.4 551 72.2
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 3.8e-239 831.6 556 71.6
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 4.6e-237 824.7 551 71.7
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 6.1e-237 824.3 551 71.5
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 1.0e-236 823.5 551 71.7
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 1.3e-236 823.2 560 70.7
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 2.3e-236 822.4 551 71.7
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 3.0e-236 822.0 551 71.7
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 1.6e-234 816.2 539 72.2
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 4.8e-234 814.7 551 71.0
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 1.4e-233 813.1 501 78.2
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 2.4e-233 812.4 547 72.6
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 2.9e-231 805.4 526 76.2
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 3.8e-231 805.1 587 69.2
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 4.2e-230 801.6 592 68.6
Psat0s2606g0080 Pisum sativum HOM05D002380 ORTHO05D008286 7.2e-230 800.8 497 79.7
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 3.3e-227 792.0 553 68.2
Manes.12G071600 Manihot esculenta HOM05D002380 ORTHO05D008286 1.3e-223 780.0 482 79.7
Hma1.2p1_0445F.1_g154530 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 2.5e-222 775.8 550 71.6
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 1.1e-219 766.9 512 74.2
Sc21g0001190 Simmondsia chinensis HOM05D002380 ORTHO05D008286 4.8e-218 761.5 486 77.0
Dinv08737 Davidia involucrata HOM05D002380 ORTHO05D008286 4.1e-217 758.4 455 84.4
Haze_12786 Corylus avellana HOM05D002380 ORTHO05D008286 1.6e-213 746.5 592 67.7
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 2.7e-208 729.2 478 72.2
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 2.7e-192 676.0 603 60.2
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 3.8e-191 672.2 544 58.8
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 1.7e-183 646.7 549 56.3
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 1.1e-172 610.9 520 57.5
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 4.1e-169 599.0 331 86.1
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 2.4e-161 573.2 529 60.7
Cpa.g.sc132.5 Carica papaya HOM05D002380 ORTHO05D008286 1.9e-158 563.5 369 75.6
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 9.6e-158 561.2 577 53.9
COL.COLO4_21855 Corchorus olitorius HOM05D002380 ORTHO05D008286 1.6e-157 560.5 335 81.8
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 8.1e-157 558.1 319 81.2
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 3.4e-147 526.2 344 71.5
Zm00001eb179140 Zea mays HOM05D002380 ORTHO05D008286 1.6e-141 507.3 447 60.4
AT2G32640 Arabidopsis thaliana HOM05D002380 ORTHO05D008286 1.2e-136 491.1 348 67.5
Cre06.g264250 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 4.8e-133 479.2 571 42.9
Ah.15g091260 Amaranthus hybridus HOM05D002380 ORTHO05D008286 1.2e-131 474.6 431 59.9
TPR.G26188 Trifolium pratense HOM05D002380 ORTHO05D008286 4.6e-128 462.6 335 70.1
SMO111G0098 Selaginella moellendorffii HOM05D002380 ORTHO05D008286 7.4e-110 402.1 375 53.6
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 1.1e-102 378.3 205 87.3
Cre04.g221550 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 2.4e-100 370.5 641 35.1
unitig_62.g23230 Utricularia gibba HOM05D002380 ORTHO05D008286 2.8e-93 347.1 245 70.2
MBI19_g44049_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 7.0e-92 342.4 241 73.9
MBI19_g40900_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 2.5e-57 227.6 140 76.4
SEGI_31657 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 4.7e-56 223.4 160 67.5
SEGI_17941 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 6.8e-47 193.0 158 62.0
COL.COLO4_21854 Corchorus olitorius HOM05D002380 ORTHO05D008286 7.6e-46 189.5 129 69.0
CBR_g8452 Chara braunii HOM05D002380 ORTHO05D008286 4.9e-45 186.8 130 62.3
Aqoxy1G02984 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 4.6e-43 180.3 99 81.8
MBI19_g42463_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 7.8e-35 152.9 160 55.0
Hund20420 Selenicereus undatus HOM05D002380 ORTHO05D010615 1.6e-32 145.2 94 69.1
SEGI_28059 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 5.1e-26 123.6 77 76.6
CBR_g12620 Chara braunii HOM05D005350 ORTHO05D008838 1.1e-25 122.5 100 51.0
Actinidia09729 Actinidia chinensis HOM05D002380 ORTHO05D026288 7.4e-25 119.8 84 76.2
Actinidia09730 Actinidia chinensis HOM05D002380 ORTHO05D008286 1.3e-24 119.0 116 57.8
Gohir.A07G186850 Gossypium hirsutum HOM05D002380 ORTHO05D026288 4.9e-21 107.1 77 71.4
LjContig00564g0015808 Lotus japonicus HOM05D002380 ORTHO05D008286 3.2e-20 104.4 63 69.8
CBR_g8454 Chara braunii HOM05D002380 ORTHO05D008286 1.3e-13 82.4 92 41.3
SEGI_40123 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.1e-12 79.3 50 76.0
Lalb_Chr04g0249911 Lupinus albus HOM05D002380 ORTHO05D026288 4.6e-11 73.9 52 73.1
Lj1P772T14 Lonicera japonica HOM05D002380 ORTHO05D008286 3.0e-10 71.2 83 53.0
CAN.G96.10 Capsicum annuum HOM05D002380 ORTHO05D026288 9.0e-07 59.7 45 64.4


User provided reference genes

Program Settings