Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029667 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D026434 2.4e-182 642.1 342 100.0
Dinv15996 Davidia involucrata HOM05D001292 ORTHO05D001202 1.6e-53 214.2 333 44.7
Actinidia01160 Actinidia chinensis HOM05D001292 ORTHO05D001202 1.3e-39 167.9 225 50.2
TAR625G0946 Trochodendron aralioides HOM05D001292 ORTHO05D001202 1.4e-33 147.9 361 35.5
Actinidia00305 Actinidia chinensis HOM05D001292 ORTHO05D026434 4.1e-33 146.4 142 57.0
Lj5A230T38 Lonicera japonica HOM05D001292 ORTHO05D026434 1.9e-30 137.5 267 40.4
Nn1g05565 Nelumbo nucifera HOM05D001292 ORTHO05D001202 6.0e-24 115.9 358 32.7
GSVIVG01009173001 Vitis vinifera HOM05D001292 ORTHO05D001202 1.6e-21 107.8 367 32.2
Dinv44858 Davidia involucrata HOM05D001292 ORTHO05D001202 4.7e-21 106.3 344 32.3
Duzib052G0393 Durio zibethinus HOM05D001292 ORTHO05D001202 6.2e-21 105.9 270 35.2
Duzib248G0868 Durio zibethinus HOM05D001292 ORTHO05D001202 2.0e-19 100.9 329 31.3
Gorai.012G143900 Gossypium raimondii HOM05D001292 ORTHO05D001202 3.4e-19 100.1 336 30.1
MBI07_g34624_MAGBIO Magnolia biondii HOM05D001292 ORTHO05D001202 1.1e-17 95.1 363 30.0
Hma1.2p1_0125F.1_g058890 Hydrangea macrophylla HOM05D001292 ORTHO05D001202 3.2e-17 93.6 314 29.3
Nn5g29887 Nelumbo nucifera HOM05D001292 ORTHO05D001202 3.2e-17 93.6 355 29.6
Peaxi162Scf00299g00720 Petunia axillaris HOM05D001292 ORTHO05D001202 5.4e-17 92.8 265 30.6
MBI16_g27584_MAGBIO Magnolia biondii HOM05D001292 ORTHO05D001202 9.2e-17 92.0 357 29.4
TWI56G0043 Tripterygium wilfordii HOM05D001292 ORTHO05D001202 9.2e-17 92.0 172 35.5
CSS0010703 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 1.2e-16 91.7 280 31.4
COL.COLO4_32386 Corchorus olitorius HOM05D001292 ORTHO05D001202 1.5e-14 84.7 268 32.1
CAN.G523.11 Capsicum annuum HOM05D001292 ORTHO05D001202 2.5e-14 84.0 335 29.9
Sabra07G0094200 Salix brachista HOM05D001292 ORTHO05D001202 3.3e-14 83.6 268 32.8
TWI12G0821 Tripterygium wilfordii HOM05D001292 ORTHO05D001202 3.3e-14 83.6 280 30.7
Potri.005G155600 Populus trichocarpa HOM05D001292 ORTHO05D001202 4.3e-14 83.2 201 29.9
COL.COLO4_35242 Corchorus olitorius HOM05D001292 ORTHO05D001202 5.6e-14 82.8 205 33.2
MD15G1385000 Malus domestica HOM05D001292 ORTHO05D001202 1.2e-13 81.6 250 30.0
Sopen01g048280 Solanum pennellii HOM05D001292 ORTHO05D001202 1.6e-13 81.3 339 30.7
Prupe.6G149300 Prunus persica HOM05D001292 ORTHO05D001202 4.7e-13 79.7 249 27.7
MD08G1197400 Malus domestica HOM05D001292 ORTHO05D001202 6.2e-13 79.3 244 29.5
Manes.10G098700 Manihot esculenta HOM05D001292 ORTHO05D001202 8.1e-13 79.0 261 32.2
CiPaw.08G055500 Carya illinoinensis HOM05D001292 ORTHO05D001202 1.8e-12 77.8 254 28.7
PGSC0003DMG400033572 Solanum tuberosum HOM05D001292 ORTHO05D001202 1.8e-12 77.8 337 27.9
Thecc.08G070600 Theobroma cacao HOM05D001292 ORTHO05D001202 2.4e-12 77.4 171 33.9
Potri.002G105700 Populus trichocarpa HOM05D001292 ORTHO05D001202 4.0e-12 76.6 170 33.5
MELO3C011091.2 Cucumis melo HOM05D001292 ORTHO05D001202 6.9e-12 75.9 178 33.7
QL09p017743 Quercus lobata HOM05D001292 ORTHO05D001202 9.0e-12 75.5 269 27.9
RcHm_v2.0_Chr7g0236781 Rosa chinensis HOM05D001292 ORTHO05D001202 1.2e-11 75.1 250 28.4
Lalb_Chr18g0060411 Lupinus albus HOM05D001292 ORTHO05D001202 2.0e-11 74.3 144 37.5
Manes.07G038300 Manihot esculenta HOM05D001292 ORTHO05D001202 2.0e-11 74.3 102 45.1
Cc02_g20940 Coffea canephora HOM05D001292 ORTHO05D001202 3.4e-11 73.6 344 25.0
Nitab4.5_0000706g0010 Nicotiana tabacum HOM05D001292 ORTHO05D001202 3.4e-11 73.6 329 28.6
FAN13G3173 Fragaria x ananassa HOM05D001292 ORTHO05D001202 4.4e-11 73.2 289 27.0
Gohir.D04G156900 Gossypium hirsutum HOM05D001292 ORTHO05D001202 4.4e-11 73.2 336 26.2
Sabra02G0083000 Salix brachista HOM05D001292 ORTHO05D001202 5.8e-11 72.8 234 30.8
AL1G20280 Arabidopsis lyrata HOM05D001292 ORTHO05D001202 9.9e-11 72.0 344 24.7
AT1G09730 Arabidopsis thaliana HOM05D001292 ORTHO05D001202 9.9e-11 72.0 338 26.3
HanXRQChr10g0289961 Helianthus annuus HOM05D001292 ORTHO05D001202 9.9e-11 72.0 146 34.9
Manes.02G145000 Manihot esculenta HOM05D001292 ORTHO05D001202 1.3e-10 71.6 203 30.5
Actinidia19631 Actinidia chinensis HOM05D001292 ORTHO05D001202 2.9e-10 70.5 252 31.3
Aa31LG1G5260 Aethionema arabicum HOM05D001292 ORTHO05D001202 2.9e-10 70.5 181 28.2
Nitab4.5_0001026g0040 Nicotiana tabacum HOM05D001292 ORTHO05D001202 2.9e-10 70.5 329 29.2
Actinidia29624 Actinidia chinensis HOM05D001292 ORTHO05D001202 4.9e-10 69.7 249 27.7
DCAR_021913 Daucus carota HOM05D001292 ORTHO05D026434 6.4e-10 69.3 262 30.9
Gohir.A04G115400 Gossypium hirsutum HOM05D001292 ORTHO05D001202 6.4e-10 69.3 142 36.6
Gohir.A05G219700 Gossypium hirsutum HOM05D001292 ORTHO05D001202 6.4e-10 69.3 171 31.0
RcHm_v2.0_Chr6g0271021 Rosa chinensis HOM05D001292 ORTHO05D001202 6.4e-10 69.3 333 26.7
CsaV3_2G030290 Cucumis sativus L. HOM05D001292 ORTHO05D001202 8.4e-10 68.9 111 40.5
Ciclev10000201m.g Citrus clementina HOM05D001292 ORTHO05D001202 1.1e-09 68.6 169 30.2
Sc01g0001150 Simmondsia chinensis HOM05D001292 ORTHO05D001202 1.1e-09 68.6 179 33.0
Thecc.02G129400 Theobroma cacao HOM05D001292 ORTHO05D001202 1.1e-09 68.6 321 29.0
FvH4_5g35390 Fragaria vesca HOM05D001292 ORTHO05D001202 1.4e-09 68.2 262 27.5
CARHR009700 Cardamine hirsuta HOM05D001292 ORTHO05D001202 1.9e-09 67.8 334 24.9
Potri.007G115400 Populus trichocarpa HOM05D001292 ORTHO05D001202 1.9e-09 67.8 261 31.0
ClCG08G011690 Citrullus lanatus HOM05D001292 ORTHO05D001202 4.2e-09 66.6 178 32.0
FAN04G0518 Fragaria x ananassa HOM05D001292 ORTHO05D001202 4.2e-09 66.6 289 25.6
Carub.0001s0907 Capsella rubella HOM05D001292 ORTHO05D001202 5.4e-09 66.2 254 28.3
Ca_00162_v3 Cicer arietinum L. HOM05D001292 ORTHO05D001202 5.4e-09 66.2 349 25.2
Gohir.A01G132400 Gossypium hirsutum HOM05D001292 ORTHO05D001202 7.1e-09 65.9 261 29.1
Gorai.002G142500 Gossypium raimondii HOM05D001292 ORTHO05D001202 7.1e-09 65.9 262 28.2
Sabra17G0029900 Salix brachista HOM05D001292 ORTHO05D001202 7.1e-09 65.9 270 30.0
Gohir.D01G117200 Gossypium hirsutum HOM05D001292 ORTHO05D001202 9.3e-09 65.5 262 27.5
Medtr2g009580 Medicago truncatula HOM05D001292 ORTHO05D001202 1.2e-08 65.1 363 28.4
Haze_22451 Corylus avellana HOM05D001292 ORTHO05D001202 1.6e-08 64.7 101 40.6
FAN18G2083 Fragaria x ananassa HOM05D001292 ORTHO05D001202 2.1e-08 64.3 262 27.5
Cpa.g.sc21.12 Carica papaya HOM05D001292 ORTHO05D001202 2.7e-08 63.9 91 40.7
Lsat_1_v5_gn_5_109800 Lactuca sativa HOM05D001292 ORTHO05D001202 2.7e-08 63.9 140 32.9
TPR.G9503 Trifolium pratense HOM05D001292 ORTHO05D001202 2.7e-08 63.9 144 33.3
MBI02_g05218_MAGBIO Magnolia biondii HOM05D001292 ORTHO05D013696 3.5e-08 63.5 286 26.9
PSO170G5589 Papaver somniferum HOM05D001292 ORTHO05D001202 3.5e-08 63.5 271 29.2
THA.LOC104820191 Tarenaya hassleriana HOM05D001292 ORTHO05D001202 3.5e-08 63.5 351 25.6
CiPaw.07G165900 Carya illinoinensis HOM05D001292 ORTHO05D001202 6.0e-08 62.8 207 31.9
BcaNung06984 Brassica carinata HOM05D001292 ORTHO05D001202 7.8e-08 62.4 268 26.1
PSO210G3238 Papaver somniferum HOM05D001292 ORTHO05D001202 7.8e-08 62.4 271 29.2
BraA08t35351Z Brassica rapa HOM05D001292 ORTHO05D001202 1.0e-07 62.0 267 27.0
Hma1.2p1_0010F.1_g006660 Hydrangea macrophylla HOM05D001292 ORTHO05D001202 1.0e-07 62.0 270 26.3
CANSAT25G2063 Cannabis sativa HOM05D001292 ORTHO05D001202 1.3e-07 61.6 230 30.0
Oeu041817.1 Olea europaea HOM05D043187 ORTHO05D049437 1.3e-07 61.6 147 28.6
Rhsim07G0211800 Rhododendron simsii HOM05D001292 ORTHO05D001202 1.3e-07 61.6 215 29.8
Sed0002698 Sechium edule HOM05D001292 ORTHO05D001202 1.3e-07 61.6 335 29.0
DCAR_009562 Daucus carota HOM05D001292 ORTHO05D045070 2.3e-07 60.8 108 32.4
DCAR_009566 Daucus carota HOM05D001292 ORTHO05D045070 2.3e-07 60.8 108 31.5
Migut.D01607 Erythranthe guttata HOM05D001292 ORTHO05D001202 2.3e-07 60.8 84 46.4
FvH4_2g11700 Fragaria vesca HOM05D001292 ORTHO05D001202 2.3e-07 60.8 336 28.9
Psat1g215560 Pisum sativum HOM05D001292 ORTHO05D001202 2.3e-07 60.8 146 30.8
ECA234G2749 Erigeron canadensis HOM05D001292 ORTHO05D001202 3.0e-07 60.5 251 29.5
Gohir.D05G222200 Gossypium hirsutum HOM05D001292 ORTHO05D001202 3.0e-07 60.5 171 29.2
TWI59G0076 Tripterygium wilfordii HOM05D001292 ORTHO05D001202 3.0e-07 60.5 83 41.0
Atru.chr6.1255 Acer truncatum HOM05D001292 ORTHO05D001202 3.9e-07 60.1 350 28.9
FAN08G0616 Fragaria x ananassa HOM05D001292 ORTHO05D001202 3.9e-07 60.1 264 27.7
Gohir.A03G177400 Gossypium hirsutum HOM05D001292 ORTHO05D001202 3.9e-07 60.1 103 40.8
Sp1g08320 Schrenkiella parvula HOM05D001292 ORTHO05D001202 3.9e-07 60.1 275 25.1
Sed0011755 Sechium edule HOM05D001292 ORTHO05D001202 5.1e-07 59.7 229 29.3
EL10Ac1g01055 Beta vulgaris HOM05D001292 ORTHO05D001202 6.6e-07 59.3 80 46.2
C08p13140 Brassica napus HOM05D001292 ORTHO05D001202 1.1e-06 58.5 269 26.4
BolC8t48942H Brassica oleracea HOM05D001292 ORTHO05D001202 1.1e-06 58.5 269 26.4
Potri.017G044000 Populus trichocarpa HOM05D001292 ORTHO05D001202 1.5e-06 58.2 272 30.1
HanXRQChr05g0163371 Helianthus annuus HOM05D001292 ORTHO05D001202 1.9e-06 57.8 151 32.5
Atru.chr13.1015 Acer truncatum HOM05D001292 ORTHO05D001202 2.5e-06 57.4 171 30.4
A08p34390 Brassica napus HOM05D001292 ORTHO05D001202 2.5e-06 57.4 270 25.9
Sopen11g009030 Solanum pennellii HOM05D001292 ORTHO05D001202 3.3e-06 57.0 221 25.8
Gohir.D02G201100 Gossypium hirsutum HOM05D001292 ORTHO05D001202 4.3e-06 56.6 142 34.5
CANSAT54G0160 Cannabis sativa HOM05D001292 ORTHO05D001202 5.6e-06 56.2 353 26.6
Gorai.005G225700 Gossypium raimondii HOM05D001292 ORTHO05D001202 7.3e-06 55.8 142 34.5


User provided reference genes

Program Settings