Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.3e-205 719.5 369 100.0
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.3e-197 693.0 360 98.6
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 1.2e-179 633.3 365 89.6
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 2.1e-171 605.9 352 86.4
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 2.7e-171 605.5 347 87.6
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 7.8e-171 604.0 364 83.8
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 2.3e-170 602.4 359 85.8
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 6.6e-170 600.9 347 87.9
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 2.5e-169 599.0 353 84.1
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 7.3e-169 597.4 343 87.2
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 7.3e-169 597.4 363 84.0
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 3.6e-168 595.1 350 86.6
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 8.1e-168 594.0 345 86.1
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 1.4e-167 593.2 362 84.3
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 1.4e-167 593.2 356 84.8
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.4e-167 593.2 399 78.2
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 1.8e-167 592.8 353 86.1
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.8e-167 592.8 353 85.0
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 6.8e-167 590.9 351 85.2
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 8.9e-167 590.5 346 85.8
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 1.5e-166 589.7 355 83.1
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 3.4e-166 588.6 359 83.3
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 5.8e-166 587.8 348 85.1
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 9.9e-166 587.0 357 82.1
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 9.9e-166 587.0 351 84.0
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 1.3e-165 586.6 336 85.7
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.7e-165 586.3 341 86.5
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 3.8e-165 585.1 349 84.0
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 4.9e-165 584.7 337 86.6
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 6.4e-165 584.3 341 85.9
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 1.1e-164 583.6 351 84.6
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.4e-164 583.2 342 85.4
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.9e-164 582.8 341 84.8
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 2.4e-164 582.4 342 84.8
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.4e-164 582.4 352 83.8
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 3.2e-164 582.0 341 85.9
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 3.2e-164 582.0 347 84.7
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 4.2e-164 581.6 333 86.2
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 4.2e-164 581.6 342 84.8
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 7.1e-164 580.9 330 87.6
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 7.1e-164 580.9 346 84.4
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 7.1e-164 580.9 360 83.1
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 9.2e-164 580.5 342 84.5
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 9.2e-164 580.5 342 84.5
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 9.2e-164 580.5 342 84.5
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 9.2e-164 580.5 352 83.0
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.2e-163 580.1 352 83.5
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 7.8e-163 577.4 344 84.0
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 1.0e-162 577.0 346 83.5
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 1.0e-162 577.0 346 83.5
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 1.0e-162 577.0 337 85.2
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 1.3e-162 576.6 348 83.0
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 1.7e-162 576.2 357 81.0
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 2.3e-162 575.9 346 83.5
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 2.3e-162 575.9 341 84.8
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 2.3e-162 575.9 355 82.3
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 6.6e-162 574.3 346 84.1
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 8.7e-162 573.9 350 81.7
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 1.1e-161 573.5 349 82.2
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.5e-161 573.2 332 85.2
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.9e-161 572.8 349 81.7
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 1.9e-161 572.8 332 85.8
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 4.3e-161 571.6 356 80.9
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 5.6e-161 571.2 333 85.9
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 1.6e-160 569.7 327 85.0
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 1.6e-160 569.7 350 81.1
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.1e-159 567.0 346 82.1
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 4.0e-159 565.1 329 85.1
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 2.0e-158 562.8 330 84.5
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 4.4e-158 561.6 330 84.2
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 4.4e-158 561.6 347 81.3
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 9.9e-158 560.5 349 81.9
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.3e-157 560.1 349 81.9
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 6.4e-157 557.8 337 83.1
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 8.4e-157 557.4 349 81.7
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 8.4e-157 557.4 349 81.7
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 1.1e-156 557.0 347 80.4
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.1e-156 557.0 354 81.4
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 3.2e-156 555.4 337 82.8
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 1.2e-155 553.5 362 79.6
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 2.1e-155 552.7 334 82.3
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 2.7e-155 552.4 350 81.7
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 6.0e-155 551.2 375 75.2
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.8e-155 550.8 349 80.5
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 1.3e-154 550.1 349 80.5
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 2.3e-154 549.3 353 79.9
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.3e-154 549.3 366 77.9
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 5.6e-153 544.7 370 76.5
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 7.3e-153 544.3 357 77.6
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 7.3e-153 544.3 340 81.2
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 1.6e-152 543.1 345 80.3
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 2.1e-152 542.7 336 80.7
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 4.8e-152 541.6 344 80.2
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 1.4e-151 540.0 331 81.0
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 3.1e-151 538.9 325 81.2
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 5.3e-151 538.1 349 77.9
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 5.3e-151 538.1 353 76.2
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 1.5e-150 536.6 334 79.9
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 3.4e-150 535.4 297 90.6
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 1.3e-149 533.5 349 78.5
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 2.4e-148 529.3 345 78.0
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.2e-148 528.9 417 69.3
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 7.1e-148 527.7 301 86.4
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.6e-147 526.6 374 74.1
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 7.4e-145 517.7 411 67.9
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 2.4e-143 512.7 333 77.8
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 6.9e-143 511.1 362 74.0
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.9e-141 505.8 332 73.2
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 1.2e-139 500.4 342 74.3
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 3.0e-138 495.7 359 71.0
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 1.1e-137 493.8 288 85.4
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 4.3e-137 491.9 351 73.2
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 9.0e-135 484.2 351 73.5
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 4.2e-132 475.3 272 88.6
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 9.7e-129 464.2 336 67.0
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 9.0e-127 457.6 350 66.3
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 1.2e-126 457.2 344 66.9
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.3e-125 453.8 347 66.3
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 1.7e-125 453.4 360 67.2
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 2.2e-125 453.0 308 73.7
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 5.0e-125 451.8 344 65.1
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 6.5e-125 451.4 297 79.1
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.5e-124 449.5 381 64.6
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.2e-124 449.1 264 84.8
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 2.8e-120 436.0 317 67.2
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 1.3e-117 427.2 332 62.7
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 6.5e-117 424.9 345 66.4
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 1.2e-115 420.6 340 66.5
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 1.0e-114 417.5 248 84.3
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 1.8e-114 416.8 308 65.3
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.5e-110 402.1 369 59.1
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 7.7e-110 401.4 241 83.4
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 9.4e-108 394.4 240 84.2
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.2e-107 394.0 308 64.0
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 8.0e-107 391.3 241 82.2
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.3e-105 386.0 274 68.2
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 4.1e-103 379.0 358 59.5
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.1e-103 379.0 273 71.4
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.8e-101 372.5 246 77.6
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 3.2e-100 369.4 244 74.6
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 8.8e-98 361.3 236 76.3
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 1.1e-95 354.4 320 56.6
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 9.8e-89 331.3 197 84.3
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 9.5e-76 288.1 285 58.6
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 1.0e-74 284.6 203 75.4
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.6e-62 244.2 161 72.0
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 2.1e-62 243.8 283 48.1
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 5.6e-60 235.7 129 89.9
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 2.8e-59 233.4 152 74.3
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 4.4e-57 226.1 357 44.5
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 2.9e-56 223.4 136 81.6
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 2.1e-54 217.2 267 51.3
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 5.2e-50 202.6 133 75.9
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 4.2e-47 193.0 236 41.9
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 6.4e-40 169.1 103 79.6
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 3.2e-39 166.8 263 40.7
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.7e-38 163.7 97 81.4
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 2.3e-37 160.6 102 72.5
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 9.6e-36 155.2 88 81.8
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 1.4e-34 151.4 96 74.0
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 2.0e-33 147.5 96 79.2
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 4.9e-32 142.9 110 71.8
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 4.6e-30 136.3 76 85.5
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 8.7e-29 132.1 82 74.4
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.1e-28 131.7 190 49.5
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 2.5e-23 114.0 72 77.8
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.1e-22 110.9 73 65.8
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.0e-21 108.6 78 65.4
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 3.9e-21 106.7 73 69.9
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 1.5e-20 104.8 96 59.4
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 1.1e-18 98.6 71 76.1
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 5.3e-18 96.3 62 77.4
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 2.5e-15 87.4 78 66.7
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 3.8e-08 63.5 50 66.0


User provided reference genes

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