Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029461 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.4e-234 815.8 392 100.0
CSS0044761 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 5.5e-223 777.3 392 95.7
CSS0008297 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 9.3e-223 776.5 392 95.4
CSS0021198 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.1e-194 683.3 418 83.0
Actinidia22188 Actinidia chinensis HOM05D003472 ORTHO05D004200 7.0e-194 680.6 390 83.1
Dinv02502 Davidia involucrata HOM05D003472 ORTHO05D004200 4.5e-193 677.9 392 82.4
Dinv23367 Davidia involucrata HOM05D003472 ORTHO05D004200 3.4e-188 661.8 394 80.5
Rhsim08G0015900 Rhododendron simsii HOM05D003472 ORTHO05D004200 6.3e-187 657.5 390 80.8
vmacro11524 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 6.5e-184 647.5 390 78.5
Hma1.2p1_1835F.1_g304660 Hydrangea macrophylla HOM05D003472 ORTHO05D004200 1.2e-182 643.3 392 75.8
vmacro22586 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 4.7e-182 641.3 421 74.8
Duzib205G0077 Durio zibethinus HOM05D003472 ORTHO05D004200 2.2e-179 632.5 392 76.5
Thecc.03G304700 Theobroma cacao HOM05D003472 ORTHO05D004200 9.2e-178 627.1 392 75.8
Manes.01G053600 Manihot esculenta HOM05D003472 ORTHO05D004200 2.0e-177 625.9 390 75.4
Gohir.A02G096900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 4.5e-177 624.8 392 74.2
QL02p028412 Quercus lobata HOM05D003472 ORTHO05D004200 5.9e-177 624.4 390 75.9
TAR629G3421 Trochodendron aralioides HOM05D003472 ORTHO05D004200 5.9e-177 624.4 390 75.4
Gorai.003G075200 Gossypium raimondii HOM05D003472 ORTHO05D004200 3.8e-176 621.7 392 73.7
CiPaw.12G079900 Carya illinoinensis HOM05D003472 ORTHO05D004200 8.6e-176 620.5 390 75.1
Haze_09126 Corylus avellana HOM05D003472 ORTHO05D004200 7.3e-175 617.5 390 74.4
Haze_09134 Corylus avellana HOM05D003472 ORTHO05D004200 7.3e-175 617.5 390 74.4
Sabra01G0063300 Salix brachista HOM05D003472 ORTHO05D004200 9.5e-175 617.1 390 74.1
RcHm_v2.0_Chr7g0186361 Rosa chinensis HOM05D003472 ORTHO05D004200 2.8e-174 615.5 390 73.8
Thecc.03G305100 Theobroma cacao HOM05D003472 ORTHO05D004200 2.8e-174 615.5 392 74.2
Potri.001G087100 Populus trichocarpa HOM05D003472 ORTHO05D004200 2.3e-173 612.5 390 73.8
Potri.003G144000 Populus trichocarpa HOM05D003472 ORTHO05D004200 4.0e-173 611.7 390 74.1
CiPaw.11G115400 Carya illinoinensis HOM05D003472 ORTHO05D004200 5.2e-173 611.3 390 73.8
FvH4_5g11460 Fragaria vesca HOM05D003472 ORTHO05D004200 1.2e-172 610.1 390 73.6
GSVIVG01019610001 Vitis vinifera HOM05D003472 ORTHO05D004200 1.2e-172 610.1 393 74.3
Cfa011959 Carpinus fangiana HOM05D003472 ORTHO05D004200 1.5e-172 609.8 390 73.8
Cc08_g16500 Coffea canephora HOM05D003472 ORTHO05D004200 1.5e-172 609.8 392 73.2
Prupe.5G126300 Prunus persica HOM05D003472 ORTHO05D004200 3.4e-172 608.6 390 74.1
QL02p028420 Quercus lobata HOM05D003472 ORTHO05D004200 7.5e-172 607.4 390 73.3
COL.COLO4_10760 Corchorus olitorius HOM05D003472 ORTHO05D004200 9.8e-172 607.1 392 72.4
DCAR_010023 Daucus carota HOM05D003472 ORTHO05D004200 2.2e-171 605.9 390 72.6
Manes.02G005400 Manihot esculenta HOM05D003472 ORTHO05D004200 1.4e-170 603.2 390 72.8
Potri.003G143900 Populus trichocarpa HOM05D003472 ORTHO05D004200 1.8e-170 602.8 390 72.8
Gohir.D11G019200 Gossypium hirsutum HOM05D003472 ORTHO05D004200 3.2e-170 602.1 392 72.4
ECA246G2504 Erigeron canadensis HOM05D003472 ORTHO05D004200 5.4e-170 601.3 392 70.7
MBI12_g15036_MAGBIO Magnolia biondii HOM05D003472 ORTHO05D004200 5.4e-170 601.3 392 71.2
Sabra03G0104400 Salix brachista HOM05D003472 ORTHO05D004200 7.0e-170 600.9 389 73.5
Aqoxy5G04304 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 9.2e-170 600.5 390 72.3
Gohir.A11G019500 Gossypium hirsutum HOM05D003472 ORTHO05D004200 1.2e-169 600.1 392 72.4
Ciclev10000621m.g Citrus clementina HOM05D003472 ORTHO05D004200 2.0e-169 599.4 391 72.9
MSTRG.24857 Avicennia marina HOM05D003472 ORTHO05D004200 5.9e-169 597.8 390 72.3
Migut.I01165 Erythranthe guttata HOM05D003472 ORTHO05D004200 5.9e-169 597.8 390 73.1
Aqoxy5G04302 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 8.6e-168 594.0 390 71.5
MSTRG.24856 Avicennia marina HOM05D003472 ORTHO05D004200 8.6e-168 594.0 390 72.1
Gorai.007G020500 Gossypium raimondii HOM05D003472 ORTHO05D004200 1.1e-167 593.6 393 72.3
Sc01g0010480 Simmondsia chinensis HOM05D003472 ORTHO05D004200 1.5e-167 593.2 392 71.2
PSO170G3423 Papaver somniferum HOM05D003472 ORTHO05D004200 3.3e-167 592.0 390 71.3
Sabra03G0104300 Salix brachista HOM05D003472 ORTHO05D004200 4.7e-166 588.2 390 71.5
Medtr8g099985 Medicago truncatula HOM05D003472 ORTHO05D004200 6.2e-166 587.8 390 70.0
Eucgr.E01027 Eucalyptus grandis HOM05D003472 ORTHO05D004200 8.0e-166 587.4 392 69.6
CANSAT21G1016 Cannabis sativa HOM05D003472 ORTHO05D004200 1.8e-165 586.3 391 69.8
HanXRQChr06g0166301 Helianthus annuus HOM05D003472 ORTHO05D004200 5.2e-165 584.7 392 69.4
MELO3C005751.2 Cucumis melo HOM05D003472 ORTHO05D004200 8.9e-165 583.9 390 69.5
TPR.G3439 Trifolium pratense HOM05D003472 ORTHO05D004200 1.2e-164 583.6 390 69.7
MD06G1113500 Malus domestica HOM05D003472 ORTHO05D004200 2.6e-164 582.4 391 70.3
CsaV3_5G002020 Cucumis sativus L. HOM05D003472 ORTHO05D004200 3.4e-164 582.0 390 68.5
SalBow6G0547 Salvia bowleyana HOM05D003472 ORTHO05D004200 7.5e-164 580.9 392 70.7
Ciclev10033306m.g Citrus clementina HOM05D003472 ORTHO05D004200 1.7e-163 579.7 398 70.9
TWI60G0599 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 2.2e-163 579.3 393 70.7
Sed0019208 Sechium edule HOM05D003472 ORTHO05D004200 3.7e-163 578.6 390 68.7
EL10Ac5g12473 Beta vulgaris HOM05D003472 ORTHO05D004200 4.9e-163 578.2 392 69.6
Sopen08g031090 Solanum pennellii HOM05D003472 ORTHO05D004200 1.1e-162 577.0 391 69.6
PGSC0003DMG400012252 Solanum tuberosum HOM05D003472 ORTHO05D004200 1.1e-162 577.0 391 69.3
Ca_17451_v3 Cicer arietinum L. HOM05D003472 ORTHO05D004200 1.4e-162 576.6 390 69.2
Solyc08g082860.4 Solanum lycopersicum HOM05D003472 ORTHO05D004200 1.4e-162 576.6 391 69.3
Nn1g00321 Nelumbo nucifera HOM05D003472 ORTHO05D004200 7.0e-162 574.3 392 69.9
CAN.G567.65 Capsicum annuum HOM05D003472 ORTHO05D004200 1.2e-161 573.5 390 68.5
TWI60G0449 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 1.2e-161 573.5 393 69.0
Gohir.D03G086900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 7.8e-161 570.9 392 69.4
ATR0757G010 Amborella trichopoda HOM05D003472 ORTHO05D004200 1.5e-159 566.6 392 68.1
Nitab4.5_0002439g0080 Nicotiana tabacum HOM05D003472 ORTHO05D004200 1.9e-159 566.2 390 69.2
arahy.Tifrunner.gnm1.ann1.69PAS2 Arachis hypogaea HOM05D003472 ORTHO05D004200 4.3e-159 565.1 390 66.9
Phvul.002G301500 Phaseolus vulgaris HOM05D003472 ORTHO05D004200 4.3e-159 565.1 390 67.2
AUR62007025 Chenopodium quinoa HOM05D003472 ORTHO05D004200 5.6e-159 564.7 390 67.7
Lsat_1_v5_gn_3_12621 Lactuca sativa HOM05D003472 ORTHO05D004200 5.6e-159 564.7 393 67.7
Nitab4.5_0006889g0020 Nicotiana tabacum HOM05D003472 ORTHO05D004200 5.6e-159 564.7 390 68.2
VMungo0251G0959 Vigna mungo HOM05D003472 ORTHO05D004200 9.5e-159 563.9 390 67.4
Glyma.05G219800 Glycine max HOM05D003472 ORTHO05D004200 1.2e-158 563.5 390 66.4
Hund11368 Selenicereus undatus HOM05D003472 ORTHO05D004200 2.1e-158 562.8 392 66.8
arahy.Tifrunner.gnm1.ann1.5YP9G9 Arachis hypogaea HOM05D003472 ORTHO05D004200 3.6e-158 562.0 390 66.7
Oeu009994.1 Olea europaea HOM05D003472 ORTHO05D004200 4.7e-158 561.6 569 53.3
CANSAT21G0971 Cannabis sativa HOM05D003472 ORTHO05D004200 6.8e-157 557.8 395 68.6
Cpa.g.sc15.13 Carica papaya HOM05D003472 ORTHO05D004200 3.7e-155 552.0 391 69.3
Ciclev10023271m.g Citrus clementina HOM05D003472 ORTHO05D004200 8.3e-155 550.8 391 68.5
PGR042G1639 Punica granatum HOM05D003472 ORTHO05D004200 1.1e-154 550.4 414 62.1
Rhsim08G0020400 Rhododendron simsii HOM05D003472 ORTHO05D004200 5.4e-154 548.1 391 70.6
vmacro13868 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 1.7e-152 543.1 393 68.7
PGR042G3552 Punica granatum HOM05D003472 ORTHO05D004200 5.1e-152 541.6 392 63.8
CDE04G3265 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 2.5e-151 539.3 382 63.4
HPP92_014452 Vanilla planifolia HOM05D003472 ORTHO05D004200 1.8e-149 533.1 395 63.5
PGR031G2218 Punica granatum HOM05D003472 ORTHO05D004200 4.0e-149 531.9 398 64.6
Thecc.03G304400 Theobroma cacao HOM05D003472 ORTHO05D004200 4.0e-149 531.9 392 66.6
PGR031G0912 Punica granatum HOM05D003472 ORTHO05D004200 3.4e-148 528.9 388 65.5
THA.LOC104806447 Tarenaya hassleriana HOM05D003472 ORTHO05D004200 4.4e-148 528.5 386 64.8
vmacro09228 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 9.9e-148 527.3 313 80.8
Ah.12g052970 Amaranthus hybridus HOM05D003472 ORTHO05D007906 2.9e-147 525.8 363 68.9
Os10g0521000 Oryza sativa ssp. japonica HOM05D003472 ORTHO05D004200 1.9e-146 523.1 396 63.4
Dinv06031 Davidia involucrata HOM05D003472 ORTHO05D004200 4.6e-145 518.5 292 82.9
FAN04G2329 Fragaria x ananassa HOM05D003472 ORTHO05D004200 1.0e-144 517.3 404 64.6
unitig_747.g22055 Utricularia gibba HOM05D003472 ORTHO05D004200 8.6e-144 514.2 393 62.8
AL7G29240 Arabidopsis lyrata HOM05D003472 ORTHO05D004200 1.4e-141 506.9 390 61.8
BcaNung05698 Brassica carinata HOM05D003472 ORTHO05D004200 1.4e-141 506.9 389 61.4
Nitab4.5_0002439g0130 Nicotiana tabacum HOM05D003472 ORTHO05D004200 1.8e-141 506.5 350 68.0
Rhsim07G0079700 Rhododendron simsii HOM05D003472 ORTHO05D004200 1.8e-141 506.5 391 65.7
ClCG01G001880 Citrullus lanatus HOM05D003472 ORTHO05D004200 2.4e-141 506.1 352 67.6
Carub.0007s1705 Capsella rubella HOM05D003472 ORTHO05D004200 3.1e-141 505.8 390 61.8
AT4G24040 Arabidopsis thaliana HOM05D003472 ORTHO05D004200 2.6e-140 502.7 389 60.9
BcaNung01109 Brassica carinata HOM05D003472 ORTHO05D004200 3.4e-140 502.3 389 60.2
CiPaw.11G115500 Carya illinoinensis HOM05D003472 ORTHO05D004200 4.4e-140 501.9 405 62.5
Lalb_Chr05g0223881 Lupinus albus HOM05D003472 ORTHO05D004200 9.9e-140 500.7 343 66.2
Sp7g22010 Schrenkiella parvula HOM05D003472 ORTHO05D004200 1.3e-139 500.4 390 60.8
FAN18G4027 Fragaria x ananassa HOM05D003472 ORTHO05D004200 8.4e-139 497.7 426 60.1
A01p15310 Brassica napus HOM05D003472 ORTHO05D004200 5.4e-138 495.0 390 60.5
BraA01t01475Z Brassica rapa HOM05D003472 ORTHO05D004200 5.4e-138 495.0 390 60.5
BcaC09g50919 Brassica carinata HOM05D003472 ORTHO05D004200 7.1e-138 494.6 390 60.5
C01p19260 Brassica napus HOM05D003472 ORTHO05D004200 7.1e-138 494.6 390 60.5
BolC7t45827H Brassica oleracea HOM05D003472 ORTHO05D004200 1.0e-136 490.7 389 59.4
FAN13G1911 Fragaria x ananassa HOM05D003472 ORTHO05D004200 1.3e-136 490.3 426 60.1
BolC1t01851H Brassica oleracea HOM05D003472 ORTHO05D004200 1.7e-136 490.0 390 60.0
Thhalv10024684m.g Eutrema salsugineum HOM05D003472 ORTHO05D004200 2.3e-136 489.6 390 59.7
BcaNung06470 Brassica carinata HOM05D003472 ORTHO05D004200 3.9e-136 488.8 389 59.4
A03p54940 Brassica napus HOM05D003472 ORTHO05D004200 3.9e-136 488.8 388 59.8
C07p53330 Brassica napus HOM05D003472 ORTHO05D004200 3.9e-136 488.8 389 59.1
BraA03t14559Z Brassica rapa HOM05D003472 ORTHO05D004200 3.9e-136 488.8 388 59.8
CARHR231440 Cardamine hirsuta HOM05D003472 ORTHO05D004200 5.1e-136 488.4 390 60.5
FAN08G2572 Fragaria x ananassa HOM05D003472 ORTHO05D004200 1.3e-134 483.8 426 59.2
CDE07G1940 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 3.6e-134 482.3 350 61.4
SEGI_04080 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 2.6e-132 476.1 398 59.3
SGA_v2.0_scaffold198G41058 Striga asiatica HOM05D003472 ORTHO05D004200 2.6e-132 476.1 363 63.1
Peaxi162Scf00074g00435 Petunia axillaris HOM05D003472 ORTHO05D004200 2.2e-131 473.0 391 59.3
Nitab4.5_0006889g0030 Nicotiana tabacum HOM05D003472 ORTHO05D004200 6.4e-131 471.5 391 59.6
Rhsim02G0248900 Rhododendron simsii HOM05D003472 ORTHO05D004200 2.4e-125 453.0 343 66.8
unitig_1.g29358 Utricularia gibba HOM05D003472 ORTHO05D004200 7.9e-121 438.0 334 62.6
Oeu009993.1 Olea europaea HOM05D003472 ORTHO05D004200 7.4e-119 431.4 390 58.5
AagrBONN_evm.TU.Sc2ySwM_117.3367 Anthoceros agrestis HOM05D003472 ORTHO05D004200 3.1e-117 426.0 395 50.4
Pp3c23_11240 Physcomitrium patens HOM05D003472 ORTHO05D004200 5.8e-116 421.8 394 50.3
Pp3c24_9748 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.3e-112 410.6 392 49.2
Pp3c24_9750 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.3e-112 410.6 392 49.2
SMO119G0122 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 3.9e-112 409.1 395 48.9
Mapoly0014s0133 Marchantia polymorpha HOM05D003472 ORTHO05D004200 5.1e-112 408.7 402 49.0
Lj8C203G7 Lonicera japonica HOM05D003472 ORTHO05D004200 7.4e-111 404.8 391 54.7
CAN.G567.64 Capsicum annuum HOM05D003472 ORTHO05D004200 3.1e-109 399.4 279 66.3
Pp3c5_16470 Physcomitrium patens HOM05D003472 ORTHO05D004200 3.6e-105 386.0 397 47.9
Pp3c16_7830 Physcomitrium patens HOM05D003472 ORTHO05D004200 6.1e-105 385.2 395 46.3
Mapoly0055s0045 Marchantia polymorpha HOM05D003472 ORTHO05D004200 3.9e-104 382.5 389 49.9
ClCG01G001870 Citrullus lanatus HOM05D003472 ORTHO05D004200 2.2e-102 376.7 411 51.8
SMO165G0094 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 1.1e-101 374.4 400 46.2
SMO165G0115 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 2.0e-100 370.2 400 46.0
SMO272G0034 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 7.7e-100 368.2 400 45.8
Psat7g022760 Pisum sativum HOM05D003472 ORTHO05D004200 1.8e-93 347.1 258 63.6
CBR_g24063 Chara braunii HOM05D003472 ORTHO05D004200 1.5e-92 344.0 444 41.4
SHI06939 Sapria himalayana HOM05D003472 ORTHO05D004200 2.2e-91 340.1 292 57.2
Lj4g0019041 Lotus japonicus HOM05D003472 ORTHO05D004200 8.8e-88 328.2 258 61.2
Zm00001eb021270 Zea mays HOM05D003472 ORTHO05D004200 9.1e-85 318.2 259 59.5
SEGI_01865 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 1.9e-74 283.9 240 54.6
PRCOL_00003576 Prasinoderma coloniale HOM05D003472 ORTHO05D004200 2.7e-73 280.0 409 39.6
SEGI_13496 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 7.2e-66 255.4 243 49.4
MCO05G351 Micromonas commoda HOM05D003472 ORTHO05D004200 2.3e-64 250.4 420 34.5
MD14G1134600 Malus domestica HOM05D003472 ORTHO05D004200 2.8e-62 243.4 359 41.2
Cre03.g195600 Chlamydomonas reinhardtii HOM05D003472 ORTHO05D004200 1.4e-61 241.1 481 33.9
Potri.006G068300 Populus trichocarpa HOM05D003472 ORTHO05D004200 8.6e-59 231.9 124 83.9
Thecc.03G304900 Theobroma cacao HOM05D003472 ORTHO05D004200 2.0e-55 220.7 193 59.6
C09p32980 Brassica napus HOM05D003472 ORTHO05D004200 1.1e-53 214.9 239 48.1
Ca_29384_v3 Cicer arietinum L. HOM05D003472 ORTHO05D004200 2.0e-52 210.7 379 34.6
BcaC04g21340 Brassica carinata HOM05D003472 ORTHO05D004200 7.8e-52 208.8 239 46.9
SEGI_06448 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 2.5e-50 203.8 149 65.1
arahy.Tifrunner.gnm1.ann1.TJXZ67 Arachis hypogaea HOM05D003472 ORTHO05D004200 5.4e-45 186.0 220 44.5
BolC9t56133H Brassica oleracea HOM05D003472 ORTHO05D004200 1.3e-43 181.4 216 47.2
PGR031G0091 Punica granatum HOM05D003472 ORTHO05D004200 3.2e-37 160.2 135 55.6
Dinv06032 Davidia involucrata HOM05D003472 ORTHO05D004200 4.3e-34 149.8 90 80.0
QL02p005551 Quercus lobata HOM05D000369 ORTHO05D004200 1.4e-29 134.8 108 59.3
EL10Ac1g01459 Beta vulgaris HOM05D003472 ORTHO05D039007 1.1e-26 125.2 91 64.8
TPR.G36092 Trifolium pratense HOM05D003472 ORTHO05D004200 7.6e-23 112.5 55 83.6
Cfa011954 Carpinus fangiana HOM05D003472 ORTHO05D016557 1.7e-22 111.3 81 69.1
RcHm_v2.0_Chr6g0261321 Rosa chinensis HOM05D003472 ORTHO05D039007 4.9e-22 109.8 62 79.0
Nn7g36715 Nelumbo nucifera HOM05D003472 ORTHO05D049298 7.1e-21 105.9 82 61.0
SEGI_32363 Sequoiadendron giganteum HOM05D003472 ORTHO05D049298 6.0e-20 102.8 72 59.7
CAN.G715.3 Capsicum annuum HOM05D003472 ORTHO05D004200 1.1e-10 72.0 139 33.1
QL04p070330 Quercus lobata HOM05D000064 ORTHO05D001902 6.9e-08 62.8 44 63.6
Aa31LG6G7240 Aethionema arabicum HOM05D003472 ORTHO05D004200 7.6e-07 59.3 33 72.7
Lalb_Chr05g0223891 Lupinus albus HOM05D003472 ORTHO05D004200 2.2e-06 57.8 53 54.7


User provided reference genes

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