Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029417 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D007072 8.6e-30 135.6 116 100.0
CSS0045795 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 2.0e-26 124.4 116 84.5
Rhsim12G0052700 Rhododendron simsii HOM05D000005 ORTHO05D000012 4.7e-20 103.2 113 82.3
vmacro01213 Vaccinium macrocarpon HOM05D000005 ORTHO05D000012 1.4e-19 101.7 55 85.5
Rhsim12G0053200 Rhododendron simsii HOM05D000005 ORTHO05D000012 8.9e-19 99.0 51 90.2
Rhsim12G0052800 Rhododendron simsii HOM05D000005 ORTHO05D000012 3.4e-18 97.1 51 88.2
RhsimUnG0211800 Rhododendron simsii HOM05D000005 ORTHO05D000294 3.4e-18 97.1 51 88.2
vmacro01214 Vaccinium macrocarpon HOM05D000005 ORTHO05D000012 6.4e-17 92.8 53 84.9
Hma1.2p1_0265F.1_g106420 Hydrangea macrophylla HOM05D000005 ORTHO05D000012 1.8e-16 91.3 51 80.4
vmacro22127 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 1.8e-16 91.3 53 83.0
Oeu040021.1 Olea europaea HOM05D000005 ORTHO05D000012 3.2e-16 90.5 112 69.6
Lj6A797T30 Lonicera japonica HOM05D000005 ORTHO05D000012 1.6e-15 88.2 55 70.9
Dinv24936 Davidia involucrata HOM05D000005 ORTHO05D000012 2.7e-15 87.4 51 80.4
GSVIVG01020123001 Vitis vinifera HOM05D000005 ORTHO05D000012 1.1e-13 82.0 116 77.6
QL03p067743 Quercus lobata HOM05D000005 ORTHO05D000012 1.9e-13 81.3 55 63.6
Nitab4.5_0001030g0010 Nicotiana tabacum HOM05D000005 ORTHO05D000012 3.3e-13 80.5 113 74.3
Ciclev10030550m.g Citrus clementina HOM05D000005 ORTHO05D000012 4.3e-13 80.1 115 75.7
Oeu030566.1 Olea europaea HOM05D000005 ORTHO05D000012 5.6e-13 79.7 55 65.5
Peaxi162Scf00828g00035 Petunia axillaris HOM05D000005 ORTHO05D000012 1.2e-12 78.6 113 75.2
Cfa009069 Carpinus fangiana HOM05D000005 ORTHO05D000012 1.6e-12 78.2 53 67.9
Haze_12100 Corylus avellana HOM05D000005 ORTHO05D000012 2.8e-12 77.4 52 69.2
Nitab4.5_0010164g0020 Nicotiana tabacum HOM05D000005 ORTHO05D000012 4.7e-12 76.6 113 68.1
QL03p067966 Quercus lobata HOM05D000005 ORTHO05D000012 4.7e-12 76.6 55 69.1
Cfa009068 Carpinus fangiana HOM05D000005 ORTHO05D000012 6.2e-12 76.3 55 63.6
Peaxi162Scf00209g00939 Petunia axillaris HOM05D000005 ORTHO05D000012 6.2e-12 76.3 55 63.6
TAR625G0578 Trochodendron aralioides HOM05D000005 ORTHO05D007072 6.2e-12 76.3 53 64.2
DCAR_031076 Daucus carota HOM05D000005 ORTHO05D000012 8.0e-12 75.9 55 63.6
QL03p067941 Quercus lobata HOM05D000005 ORTHO05D000012 2.3e-11 74.3 53 69.8
Duzib268G1199 Durio zibethinus HOM05D000005 ORTHO05D000012 3.1e-11 73.9 55 54.5
CAN.G27.62 Capsicum annuum HOM05D000005 ORTHO05D000012 4.0e-11 73.6 113 77.0
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 4.0e-11 73.6 52 67.3
QL03p067929 Quercus lobata HOM05D000005 ORTHO05D000012 6.8e-11 72.8 53 67.9
Solyc05g006620.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 6.8e-11 72.8 52 63.5
Sopen05g002560 Solanum pennellii HOM05D000005 ORTHO05D000012 6.8e-11 72.8 52 63.5
Prupe.1G263500 Prunus persica HOM05D000005 ORTHO05D000012 1.2e-10 72.0 53 64.2
Duzib268G0999 Durio zibethinus HOM05D000005 ORTHO05D000012 1.5e-10 71.6 55 54.5
CARHR024680 Cardamine hirsuta HOM05D000005 ORTHO05D000012 3.4e-10 70.5 114 61.4
Haze_12098 Corylus avellana HOM05D000005 ORTHO05D000012 5.8e-10 69.7 49 65.3
Haze_12099 Corylus avellana HOM05D000005 ORTHO05D000294 5.8e-10 69.7 49 65.3
THA.LOC104822077 Tarenaya hassleriana HOM05D000005 ORTHO05D000012 5.8e-10 69.7 54 59.3
TAR371G0085 Trochodendron aralioides HOM05D000005 ORTHO05D000012 7.5e-10 69.3 53 62.3
Prupe.1G263600 Prunus persica HOM05D000005 ORTHO05D000012 9.8e-10 68.9 53 60.4
QL03p067835 Quercus lobata HOM05D000005 ORTHO05D000012 1.3e-09 68.6 53 60.4
PGSC0003DMG401022603 Solanum tuberosum HOM05D000005 ORTHO05D000012 1.3e-09 68.6 51 60.8
CANSAT80G1024 Cannabis sativa HOM05D000005 ORTHO05D000012 1.7e-09 68.2 51 62.7
CiPaw.05G143000 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.7e-09 68.2 50 64.0
Prupe.1G263400 Prunus persica HOM05D000005 ORTHO05D000012 1.7e-09 68.2 51 62.7
CiPaw.05G142900 Carya illinoinensis HOM05D000005 ORTHO05D000012 2.2e-09 67.8 49 63.3
Thhalv10023218m.g Eutrema salsugineum HOM05D000005 ORTHO05D000012 2.2e-09 67.8 114 61.4
Sc14g0008620 Simmondsia chinensis HOM05D000005 ORTHO05D000012 2.2e-09 67.8 53 56.6
TAR371G0186 Trochodendron aralioides HOM05D000005 ORTHO05D000012 2.2e-09 67.8 50 66.0
arahy.Tifrunner.gnm1.ann1.7121CT Arachis hypogaea HOM05D000005 ORTHO05D000012 2.9e-09 67.4 52 55.8
MD16G1082300 Malus domestica HOM05D000005 ORTHO05D000012 2.9e-09 67.4 116 70.7
FvH4_4g35430 Fragaria vesca HOM05D000005 ORTHO05D000012 3.7e-09 67.0 51 58.8
FAN07G1406 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.7e-09 67.0 51 58.8
FAN17G0480 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.7e-09 67.0 51 58.8
MD16G1082700 Malus domestica HOM05D000005 ORTHO05D000012 3.7e-09 67.0 54 55.6
Thecc.02G237000 Theobroma cacao HOM05D000005 ORTHO05D000012 3.7e-09 67.0 54 53.7
arahy.Tifrunner.gnm1.ann1.3D7DCX Arachis hypogaea HOM05D000005 ORTHO05D000012 4.9e-09 66.6 52 55.8
CARHR024660 Cardamine hirsuta HOM05D000005 ORTHO05D000012 4.9e-09 66.6 112 60.7
PGR119G0184 Punica granatum HOM05D000005 ORTHO05D000012 4.9e-09 66.6 51 56.9
CiPaw.05G143100 Carya illinoinensis HOM05D000005 ORTHO05D000012 6.4e-09 66.2 47 66.0
FvH4_4g35411 Fragaria vesca HOM05D000005 ORTHO05D000012 6.4e-09 66.2 51 58.8
FAN12G0142 Fragaria x ananassa HOM05D000005 ORTHO05D000012 6.4e-09 66.2 51 58.8
FAN22G2050 Fragaria x ananassa HOM05D000005 ORTHO05D000012 6.4e-09 66.2 51 58.8
RcHm_v2.0_Chr4g0445061 Rosa chinensis HOM05D000005 ORTHO05D000012 6.4e-09 66.2 51 58.8
Ah.03g132160 Amaranthus hybridus HOM05D000005 ORTHO05D000012 8.3e-09 65.9 54 53.7
BcaC05g26337 Brassica carinata HOM05D000005 ORTHO05D000012 8.3e-09 65.9 54 55.6
C05p23460 Brassica napus HOM05D000005 ORTHO05D000012 8.3e-09 65.9 54 55.6
BolC5t31058H Brassica oleracea HOM05D000005 ORTHO05D000012 8.3e-09 65.9 54 55.6
AUR62039439 Chenopodium quinoa HOM05D000005 ORTHO05D000012 8.3e-09 65.9 51 58.8
Lalb_Chr19g0127891 Lupinus albus HOM05D000005 ORTHO05D000012 8.3e-09 65.9 55 56.4
Psat4g130080 Pisum sativum HOM05D000005 ORTHO05D000012 8.3e-09 65.9 55 56.4
PGR142G2421 Punica granatum HOM05D000005 ORTHO05D000012 8.3e-09 65.9 53 54.7
Psat4g130120 Pisum sativum HOM05D000005 ORTHO05D000012 1.1e-08 65.5 55 56.4
PGR142G2663 Punica granatum HOM05D000005 ORTHO05D000012 1.1e-08 65.5 53 52.8
BcaC02g07540 Brassica carinata HOM05D000005 ORTHO05D000012 1.4e-08 65.1 54 51.9
C05p23530 Brassica napus HOM05D000005 ORTHO05D000012 1.4e-08 65.1 54 51.9
BolC5t31066H Brassica oleracea HOM05D000005 ORTHO05D000012 1.4e-08 65.1 54 51.9
Dinv24934 Davidia involucrata HOM05D000005 ORTHO05D013528 1.9e-08 64.7 52 65.4
PGR102G0476 Punica granatum HOM05D000005 ORTHO05D000012 1.9e-08 64.7 55 56.4
PGR102G1004 Punica granatum HOM05D000005 ORTHO05D000012 1.9e-08 64.7 55 56.4
Sp1g21590 Schrenkiella parvula HOM05D000005 ORTHO05D000012 1.9e-08 64.7 114 58.8
CiPaw.05G143300 Carya illinoinensis HOM05D000005 ORTHO05D000012 2.4e-08 64.3 50 62.0
QL03p067844 Quercus lobata HOM05D000005 ORTHO05D000012 2.4e-08 64.3 49 63.3
Sp1g21600 Schrenkiella parvula HOM05D000005 ORTHO05D000012 2.4e-08 64.3 52 53.8
CiPaw.05G143200 Carya illinoinensis HOM05D000005 ORTHO05D000012 3.2e-08 63.9 50 62.0
PGR044G0500 Punica granatum HOM05D000005 ORTHO05D011459 3.2e-08 63.9 54 50.0
Sc04g0008790 Simmondsia chinensis HOM05D000005 ORTHO05D000012 3.2e-08 63.9 50 58.0
TWI36G0972 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 4.1e-08 63.5 55 54.5
BcaB07g32393 Brassica carinata HOM05D000005 ORTHO05D000012 5.4e-08 63.2 54 51.9
CSS0023319 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 5.4e-08 63.2 52 65.4
CSS0049687 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 5.4e-08 63.2 52 65.4
Psat4g130040 Pisum sativum HOM05D000005 ORTHO05D000012 7.0e-08 62.8 53 56.6
BraA09t39555Z Brassica rapa HOM05D000005 ORTHO05D000012 9.2e-08 62.4 114 61.4
AL1G38285 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 1.2e-07 62.0 114 72.8
BcaB03g11975 Brassica carinata HOM05D000005 ORTHO05D000012 1.2e-07 62.0 54 53.7
AUR62026544 Chenopodium quinoa HOM05D000005 ORTHO05D000012 1.2e-07 62.0 51 54.9
TWI36G0858 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 1.2e-07 62.0 55 52.7
CSS0003219 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.6e-07 61.6 51 64.7
PGR142G3250 Punica granatum HOM05D000005 ORTHO05D000012 1.6e-07 61.6 53 49.1
PGR142G3252 Punica granatum HOM05D000005 ORTHO05D000012 1.6e-07 61.6 53 50.9
Eucgr.L01909 Eucalyptus grandis HOM05D000005 ORTHO05D000012 2.0e-07 61.2 52 57.7
BcaB07g32394 Brassica carinata HOM05D000005 ORTHO05D000012 2.7e-07 60.8 54 51.9
A09p40600 Brassica napus HOM05D000005 ORTHO05D000012 3.5e-07 60.5 54 50.0
BraA09t39556Z Brassica rapa HOM05D000005 ORTHO05D000012 3.5e-07 60.5 54 50.0
Glyma.08G293600 Glycine max HOM05D000005 ORTHO05D000012 3.5e-07 60.5 50 60.0
BcaB05g22226 Brassica carinata HOM05D000005 ORTHO05D000012 4.6e-07 60.1 54 50.0
BcaC07g39242 Brassica carinata HOM05D000005 ORTHO05D000012 4.6e-07 60.1 54 50.0
BcaC07g39246 Brassica carinata HOM05D000005 ORTHO05D000012 4.6e-07 60.1 54 51.9
A08p27780 Brassica napus HOM05D000005 ORTHO05D000012 4.6e-07 60.1 54 51.9
C08p22520 Brassica napus HOM05D000005 ORTHO05D000012 4.6e-07 60.1 54 51.9
Gohir.D02G168100 Gossypium hirsutum HOM05D000005 ORTHO05D000012 6.0e-07 59.7 54 48.1
Gorai.005G188500 Gossypium raimondii HOM05D000005 ORTHO05D000012 6.0e-07 59.7 54 48.1
A08p27810 Brassica napus HOM05D000005 ORTHO05D000012 7.8e-07 59.3 54 50.0
BraA08t34712Z Brassica rapa HOM05D000005 ORTHO05D000012 7.8e-07 59.3 54 50.0
Eucgr.B03389 Eucalyptus grandis HOM05D000005 ORTHO05D000012 7.8e-07 59.3 52 55.8
Lj2g0014979 Lotus japonicus HOM05D000005 ORTHO05D000012 7.8e-07 59.3 51 54.9
BcaB03g11973 Brassica carinata HOM05D000005 ORTHO05D000012 1.0e-06 58.9 50 54.0
Eucgr.B00005 Eucalyptus grandis HOM05D000005 ORTHO05D007072 1.0e-06 58.9 54 50.0
Peaxi162Scf00828g00413 Petunia axillaris HOM05D000005 ORTHO05D000012 1.0e-06 58.9 52 59.6
Eucgr.B02581 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.3e-06 58.5 50 50.0
Gohir.A03G144800 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.3e-06 58.5 54 48.1
Phvul.002G079200 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 1.3e-06 58.5 52 51.9
Ca_04009_v3 Cicer arietinum L. HOM05D000005 ORTHO05D000012 1.7e-06 58.2 49 57.1
Eucgr.C02708 Eucalyptus grandis HOM05D019435 ORTHO05D007072 1.7e-06 58.2 54 51.9
Medtr8g062130 Medicago truncatula HOM05D000005 ORTHO05D000012 1.7e-06 58.2 49 59.2
Nitab4.5_0002509g0010 Nicotiana tabacum HOM05D000005 ORTHO05D000012 1.7e-06 58.2 52 57.7
PGR142G2950 Punica granatum HOM05D000005 ORTHO05D000012 1.7e-06 58.2 53 49.1
PGR142G4245 Punica granatum HOM05D000005 ORTHO05D000012 1.7e-06 58.2 53 49.1
Aa31LG7G8010 Aethionema arabicum HOM05D000005 ORTHO05D000012 3.0e-06 57.4 46 58.7
arahy.Tifrunner.gnm1.ann1.DW1R6S Arachis hypogaea HOM05D000005 ORTHO05D000012 3.0e-06 57.4 44 59.1
arahy.Tifrunner.gnm1.ann1.Y2N0N5 Arachis hypogaea HOM05D000005 ORTHO05D000012 3.0e-06 57.4 44 59.1
C08p22470 Brassica napus HOM05D000005 ORTHO05D000012 3.0e-06 57.4 54 48.1
BolC8t49881H Brassica oleracea HOM05D000005 ORTHO05D000012 3.0e-06 57.4 54 48.1
Glyma.01G039000 Glycine max HOM05D000005 ORTHO05D000012 3.0e-06 57.4 51 51.0
CAN.G27.60 Capsicum annuum HOM05D000005 ORTHO05D000012 3.9e-06 57.0 53 56.6
Eucgr.B03388 Eucalyptus grandis HOM05D000005 ORTHO05D000012 3.9e-06 57.0 50 56.0
Gohir.D02G167900 Gossypium hirsutum HOM05D000005 ORTHO05D000012 3.9e-06 57.0 51 49.0
Gorai.005G188300 Gossypium raimondii HOM05D000005 ORTHO05D000012 3.9e-06 57.0 51 49.0
Gorai.005G188600 Gossypium raimondii HOM05D000005 ORTHO05D000012 5.0e-06 56.6 54 46.3
RcHm_v2.0_Chr4g0445031 Rosa chinensis HOM05D000005 ORTHO05D000012 5.0e-06 56.6 49 55.1
FAN07G1507 Fragaria x ananassa HOM05D000005 ORTHO05D000012 6.6e-06 56.2 49 55.1
Medtr8g062140 Medicago truncatula HOM05D000005 ORTHO05D000012 6.6e-06 56.2 50 58.0
Potri.015G043600 Populus trichocarpa HOM05D000005 ORTHO05D000012 6.6e-06 56.2 43 60.5
Carub.0007s2446 Capsella rubella HOM05D000005 ORTHO05D000449 8.6e-06 55.8 53 52.8
Lj2g0014428 Lotus japonicus HOM05D000005 ORTHO05D000012 8.6e-06 55.8 51 49.0
Nn8g40911 Nelumbo nucifera HOM05D000005 ORTHO05D000012 8.6e-06 55.8 52 55.8


User provided reference genes

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