Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 9.1e-187 656.8 330 100.0
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 3.3e-181 638.3 350 93.4
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.0e-146 522.7 348 77.6
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 6.2e-143 511.1 349 74.5
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 1.2e-141 506.9 350 72.9
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 1.5e-141 506.5 348 73.3
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 1.5e-141 506.5 350 74.0
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 3.4e-141 505.4 350 73.1
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 9.8e-141 503.8 348 74.1
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 1.3e-140 503.4 350 73.1
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 1.7e-140 503.1 350 72.6
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 1.4e-139 500.0 350 72.6
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 1.9e-139 499.6 350 72.6
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 3.2e-139 498.8 348 72.7
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 4.6e-138 495.0 348 72.1
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 2.3e-137 492.7 348 70.4
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 3.9e-137 491.9 350 71.7
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 1.5e-136 490.0 348 72.4
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 1.9e-136 489.6 351 72.1
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 2.5e-136 489.2 348 70.7
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 4.3e-136 488.4 349 71.3
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 5.6e-136 488.0 350 69.4
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 5.6e-136 488.0 348 72.1
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 7.3e-136 487.6 348 71.3
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 9.5e-136 487.3 348 70.4
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 9.5e-136 487.3 350 71.1
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 2.1e-135 486.1 348 71.0
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 2.8e-135 485.7 350 70.3
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 3.6e-135 485.3 348 69.8
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 6.2e-135 484.6 348 70.7
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 1.4e-134 483.4 347 70.0
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 1.4e-134 483.4 348 70.1
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.8e-134 483.0 348 69.5
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 3.1e-134 482.3 348 69.3
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 8.9e-134 480.7 348 69.3
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 8.9e-134 480.7 348 69.3
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 8.9e-134 480.7 348 69.0
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.0e-133 479.6 348 69.0
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 2.6e-133 479.2 351 69.8
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 2.6e-133 479.2 347 69.2
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 3.4e-133 478.8 348 69.8
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 4.4e-133 478.4 380 65.8
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 4.4e-133 478.4 413 62.7
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 9.9e-133 477.2 346 69.9
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 9.9e-133 477.2 351 69.5
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 2.2e-132 476.1 349 70.2
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 2.2e-132 476.1 347 69.7
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 2.9e-132 475.7 349 68.5
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 3.7e-132 475.3 350 69.4
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 4.9e-132 474.9 351 68.9
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 4.9e-132 474.9 350 70.0
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 6.4e-132 474.6 348 70.1
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 8.3e-132 474.2 351 69.8
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 8.3e-132 474.2 347 69.2
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 1.4e-131 473.4 350 68.9
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 5.4e-131 471.5 354 68.4
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 7.1e-131 471.1 351 68.4
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 9.2e-131 470.7 353 68.6
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 4.6e-130 468.4 348 67.8
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 4.6e-130 468.4 347 68.6
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 1.7e-129 466.5 353 69.1
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 2.3e-129 466.1 353 69.1
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 2.3e-129 466.1 347 68.9
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 2.3e-129 466.1 348 66.7
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 3.0e-129 465.7 351 67.2
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 3.0e-129 465.7 347 68.0
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 6.6e-129 464.5 349 67.0
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 1.5e-128 463.4 347 68.9
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 1.5e-128 463.4 393 63.4
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 1.9e-128 463.0 348 67.2
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 1.9e-128 463.0 351 67.8
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 2.5e-128 462.6 347 66.9
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 2.5e-128 462.6 325 71.4
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 3.3e-128 462.2 347 66.9
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 1.6e-127 459.9 354 67.2
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 2.8e-127 459.1 346 67.3
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 4.7e-127 458.4 354 66.1
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 4.7e-127 458.4 313 75.4
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 6.2e-127 458.0 349 67.0
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 6.8e-126 454.5 350 64.9
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 6.8e-126 454.5 350 64.9
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 6.8e-126 454.5 350 64.9
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 8.9e-126 454.1 350 66.3
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 2.0e-125 453.0 444 57.2
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 3.4e-125 452.2 347 65.4
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 2.2e-124 449.5 350 64.6
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.9e-124 449.1 349 65.0
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 3.8e-124 448.7 348 66.7
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 6.4e-124 448.0 350 64.0
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.1e-123 447.2 350 64.6
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 1.1e-123 447.2 350 63.7
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 3.2e-123 445.7 350 63.4
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 7.1e-123 444.5 350 63.1
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 2.7e-122 442.6 354 65.5
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 3.5e-122 442.2 347 63.7
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 4.6e-122 441.8 347 64.6
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 6.0e-122 441.4 350 64.6
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 6.0e-122 441.4 347 64.6
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 7.8e-122 441.0 347 63.7
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 7.8e-122 441.0 347 65.1
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 1.0e-121 440.7 347 65.1
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 1.7e-121 439.9 350 63.1
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 3.0e-121 439.1 348 64.1
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 3.0e-121 439.1 347 64.0
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 3.9e-121 438.7 348 62.6
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 6.6e-121 438.0 347 64.3
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 1.9e-120 436.4 350 64.0
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 4.3e-120 435.3 350 62.3
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 4.3e-120 435.3 347 62.8
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 5.6e-120 434.9 304 71.7
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 5.6e-120 434.9 350 63.4
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 7.3e-120 434.5 350 63.4
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 1.6e-119 433.3 347 63.1
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 2.1e-119 433.0 349 62.5
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.1e-118 430.6 350 62.9
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 2.2e-116 422.9 403 56.3
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 1.5e-112 410.2 352 59.9
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 3.1e-110 402.5 347 58.8
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 4.0e-110 402.1 370 57.8
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 1.3e-103 380.6 348 54.9
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 3.1e-102 375.9 357 55.2
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 1.3e-100 370.5 347 53.6
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 3.9e-97 359.0 356 53.7
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 5.7e-96 355.1 356 52.8
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 2.0e-93 346.7 347 50.4
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 2.9e-92 342.8 270 65.6
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 6.1e-90 335.1 218 73.4
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 4.1e-86 322.4 266 62.0
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 4.6e-82 308.9 271 61.3
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.1e-78 297.7 229 66.4
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.6e-72 276.6 181 74.0
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 2.0e-61 240.4 369 39.6
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 2.0e-53 213.8 322 40.1
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 7.7e-53 211.8 324 43.2
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 4.7e-50 202.6 188 57.4
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 2.2e-47 193.7 115 82.6
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 1.8e-46 190.7 221 48.4
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 2.2e-39 167.2 200 50.0
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 3.6e-34 149.8 152 50.7
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 9.2e-30 135.2 104 65.4
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 3.3e-27 126.7 84 67.9
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 1.5e-24 117.9 80 67.5
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.9e-22 110.9 87 62.1
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 1.2e-21 108.2 89 62.9
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 1.2e-21 108.2 89 62.9
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.6e-21 107.8 83 63.9
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 5.1e-20 102.8 220 33.2
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 1.9e-19 100.9 89 60.7
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 6.2e-18 95.9 73 63.0
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 3.7e-15 86.7 59 71.2
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 4.9e-15 86.3 74 55.4
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 4.9e-15 86.3 74 55.4
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 1.1e-14 85.1 81 50.6
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 3.2e-14 83.6 74 54.1
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 7.1e-14 82.4 164 39.6
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 3.3e-11 73.6 115 40.9
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 4.3e-11 73.2 115 40.0
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 7.3e-11 72.4 88 46.6
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 5.2e-09 66.2 66 47.0
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 1.7e-07 61.2 67 46.3


User provided reference genes

Program Settings