Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.4e-44 181.8 91 100.0
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 8.7e-23 110.2 91 68.1
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 4.8e-21 104.4 91 62.6
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 5.5e-09 64.3 45 71.1
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.1e-08 62.4 37 78.4
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 2.1e-08 62.4 43 72.1
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 2.1e-08 62.4 42 71.4
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 2.1e-08 62.4 42 71.4
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 4.7e-08 61.2 42 71.4
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 6.1e-08 60.8 42 66.7
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 6.1e-08 60.8 42 71.4
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 6.1e-08 60.8 42 71.4
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 6.1e-08 60.8 42 71.4
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 6.1e-08 60.8 42 71.4
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 6.1e-08 60.8 42 71.4
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 6.1e-08 60.8 42 71.4
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 6.1e-08 60.8 42 71.4
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 6.1e-08 60.8 42 71.4
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 6.1e-08 60.8 42 71.4
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 6.1e-08 60.8 42 71.4
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 6.1e-08 60.8 42 71.4
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 6.1e-08 60.8 42 71.4
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 6.1e-08 60.8 42 71.4
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 6.1e-08 60.8 42 71.4
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 6.1e-08 60.8 42 71.4
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 6.1e-08 60.8 42 71.4
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 6.1e-08 60.8 42 71.4
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 6.1e-08 60.8 42 71.4
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 7.9e-08 60.5 42 69.0
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 7.9e-08 60.5 42 69.0
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 7.9e-08 60.5 37 73.0
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 7.9e-08 60.5 42 69.0
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 7.9e-08 60.5 42 69.0
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 7.9e-08 60.5 42 69.0
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 1.0e-07 60.1 42 66.7
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 1.0e-07 60.1 42 69.0
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 1.0e-07 60.1 42 69.0
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.0e-07 60.1 42 69.0
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.0e-07 60.1 42 69.0
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 1.0e-07 60.1 42 69.0
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 1.0e-07 60.1 49 63.3
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 1.0e-07 60.1 49 63.3
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.0e-07 60.1 55 61.8
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 1.0e-07 60.1 42 69.0
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 1.4e-07 59.7 42 69.0
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.4e-07 59.7 42 69.0
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.4e-07 59.7 42 69.0
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 1.4e-07 59.7 42 69.0
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 1.4e-07 59.7 42 69.0
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 1.4e-07 59.7 34 76.5
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 1.4e-07 59.7 42 69.0
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 1.4e-07 59.7 42 69.0
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 1.4e-07 59.7 42 69.0
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.4e-07 59.7 42 69.0
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 1.8e-07 59.3 42 66.7
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 1.8e-07 59.3 42 69.0
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 1.8e-07 59.3 42 69.0
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.8e-07 59.3 42 66.7
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 1.8e-07 59.3 37 75.7
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 64.3
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 69.0
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 69.0
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 69.0
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 69.0
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 64.3
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 64.3
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 64.3
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 64.3
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 64.3
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 64.3
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 64.3
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 66.7
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 66.7
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 64.3
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 66.7
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 69.0
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 66.7
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 69.0
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 69.0
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 69.0
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.3e-07 58.9 55 58.2
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 64.3
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 69.0
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 2.3e-07 58.9 42 69.0
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 3.0e-07 58.5 42 66.7
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 3.0e-07 58.5 42 64.3
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 3.0e-07 58.5 42 64.3
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 3.0e-07 58.5 42 69.0
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 3.0e-07 58.5 42 69.0
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 3.0e-07 58.5 42 69.0
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 3.0e-07 58.5 42 69.0
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 3.0e-07 58.5 42 69.0
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 3.0e-07 58.5 42 69.0
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 3.0e-07 58.5 42 69.0
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 3.0e-07 58.5 42 69.0
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 3.0e-07 58.5 42 66.7
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 3.0e-07 58.5 42 66.7
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.0e-07 58.5 55 61.8
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 3.0e-07 58.5 43 65.1
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 3.0e-07 58.5 42 69.0
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 3.9e-07 58.2 34 76.5
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 3.9e-07 58.2 34 76.5
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 3.9e-07 58.2 42 66.7
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 3.9e-07 58.2 42 66.7
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 3.9e-07 58.2 43 62.8
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.9e-07 58.2 42 66.7
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 5.1e-07 57.8 42 66.7
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 5.1e-07 57.8 42 69.0
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 5.1e-07 57.8 42 64.3
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 5.1e-07 57.8 42 66.7
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 5.1e-07 57.8 42 66.7
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 5.1e-07 57.8 42 66.7
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 5.1e-07 57.8 42 66.7
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 5.1e-07 57.8 42 66.7
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 5.1e-07 57.8 42 64.3
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 5.1e-07 57.8 42 66.7
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 5.1e-07 57.8 42 66.7
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 5.1e-07 57.8 42 66.7
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 6.7e-07 57.4 42 64.3
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 6.7e-07 57.4 42 66.7
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 6.7e-07 57.4 42 66.7
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 6.7e-07 57.4 42 66.7
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 6.7e-07 57.4 42 66.7
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 6.7e-07 57.4 42 66.7
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 6.7e-07 57.4 42 66.7
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 8.8e-07 57.0 42 61.9
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 8.8e-07 57.0 42 64.3
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 8.8e-07 57.0 42 64.3
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 8.8e-07 57.0 42 69.0
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 8.8e-07 57.0 42 61.9
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 8.8e-07 57.0 42 61.9
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 8.8e-07 57.0 42 64.3
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.5e-06 56.2 42 61.9
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 1.5e-06 56.2 33 75.8
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 1.5e-06 56.2 42 66.7
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 2.0e-06 55.8 42 69.0
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.0e-06 55.8 55 58.2
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 2.6e-06 55.5 42 61.9
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 2.6e-06 55.5 42 64.3
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 3.3e-06 55.1 34 73.5
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 4.4e-06 54.7 42 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 5.7e-06 54.3 42 59.5


User provided reference genes

Program Settings