Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029271 Camellia sinensis var. sinensis HOM05D001780 ORTHO05D005322 3.4e-183 644.8 312 100.0
CSS0049396 Camellia sinensis var. sinensis HOM05D001780 ORTHO05D005322 3.6e-84 315.8 334 53.6
Dinv29743 Davidia involucrata HOM05D001780 ORTHO05D005322 3.0e-83 312.8 330 53.9
TAR362G0169 Trochodendron aralioides HOM05D001780 ORTHO05D005322 1.0e-78 297.7 329 51.1
vmacro08154 Vaccinium macrocarpon HOM05D001780 ORTHO05D005322 1.7e-78 297.0 330 51.8
Actinidia40255 Actinidia chinensis HOM05D001780 ORTHO05D005322 3.3e-77 292.7 329 52.6
Rhsim04G0222400 Rhododendron simsii HOM05D001780 ORTHO05D005322 1.4e-75 287.3 355 48.2
QL06p008943 Quercus lobata HOM05D001780 ORTHO05D005322 1.8e-75 287.0 329 48.3
Sc13g0003450 Simmondsia chinensis HOM05D001780 ORTHO05D005322 2.3e-75 286.6 329 49.8
Cfa015386 Carpinus fangiana HOM05D001780 ORTHO05D005322 4.0e-75 285.8 329 48.0
Potri.010G014500 Populus trichocarpa HOM05D001780 ORTHO05D005322 4.0e-75 285.8 329 48.9
Duzib160G0626 Durio zibethinus HOM05D001780 ORTHO05D005322 6.8e-75 285.0 330 48.5
CANSAT78G1960 Cannabis sativa HOM05D001780 ORTHO05D005322 1.5e-74 283.9 329 47.7
Ciclev10004211m.g Citrus clementina HOM05D001780 ORTHO05D005322 4.4e-74 282.3 330 48.5
GSVIVG01017762001 Vitis vinifera HOM05D001780 ORTHO05D005322 4.4e-74 282.3 330 48.5
Cc03_g01900 Coffea canephora HOM05D001780 ORTHO05D005322 5.7e-74 282.0 329 48.9
PGSC0003DMG400006289 Solanum tuberosum HOM05D001780 ORTHO05D005322 5.7e-74 282.0 330 48.5
DCAR_002465 Daucus carota HOM05D001780 ORTHO05D005322 9.8e-74 281.2 329 48.6
Sopen01g030670 Solanum pennellii HOM05D001780 ORTHO05D005322 1.7e-73 280.4 330 48.5
Nitab4.5_0000700g0090 Nicotiana tabacum HOM05D001780 ORTHO05D005322 3.7e-73 279.3 330 48.5
Sabra10G0009300 Salix brachista HOM05D001780 ORTHO05D005322 1.1e-72 277.7 329 47.7
Atru.chr4.2840 Acer truncatum HOM05D001780 ORTHO05D005322 1.4e-72 277.3 330 47.6
Solyc01g080810.3 Solanum lycopersicum HOM05D001780 ORTHO05D005322 1.8e-72 276.9 330 48.2
Gorai.006G096300 Gossypium raimondii HOM05D001780 ORTHO05D005322 4.1e-72 275.8 330 47.3
Prupe.1G136500 Prunus persica HOM05D001780 ORTHO05D005322 4.1e-72 275.8 329 48.0
Ca_01936_v3 Cicer arietinum L. HOM05D001780 ORTHO05D005322 7.0e-72 275.0 329 48.9
Peaxi162Scf00048g01820 Petunia axillaris HOM05D001780 ORTHO05D005322 7.0e-72 275.0 330 47.9
Nitab4.5_0000059g0580 Nicotiana tabacum HOM05D001780 ORTHO05D005322 9.2e-72 274.6 325 47.7
CAN.G185.34 Capsicum annuum HOM05D001780 ORTHO05D005322 1.2e-71 274.2 330 47.3
ClCG05G006110 Citrullus lanatus HOM05D001780 ORTHO05D005322 1.2e-71 274.2 329 47.1
Thecc.02G218100 Theobroma cacao HOM05D001780 ORTHO05D005322 1.2e-71 274.2 329 46.8
Gohir.D09G080700 Gossypium hirsutum HOM05D001780 ORTHO05D005322 1.6e-71 273.9 330 47.0
Manes.03G195400 Manihot esculenta HOM05D001780 ORTHO05D005322 1.6e-71 273.9 329 48.0
CiPaw.01G148500 Carya illinoinensis HOM05D001780 ORTHO05D005322 2.7e-71 273.1 329 46.5
Migut.G00161 Erythranthe guttata HOM05D001780 ORTHO05D005322 3.5e-71 272.7 329 48.6
Gohir.A09G080700 Gossypium hirsutum HOM05D001780 ORTHO05D005322 3.5e-71 272.7 330 47.0
Aqoxy2G02980_Aqoxy2G02981 Aquilegia oxysepala HOM05D001780 ORTHO05D005322 7.8e-71 271.6 331 47.7
PGR004G0386 Punica granatum HOM05D001780 ORTHO05D005322 1.0e-70 271.2 329 46.8
MELO3C006665.2 Cucumis melo HOM05D001780 ORTHO05D005322 1.3e-70 270.8 329 46.2
MD13G1168400 Malus domestica HOM05D001780 ORTHO05D005322 2.3e-70 270.0 329 47.4
Eucgr.H03916 Eucalyptus grandis HOM05D001780 ORTHO05D005322 3.0e-70 269.6 329 45.6
HanXRQChr03g0080971 Helianthus annuus HOM05D001780 ORTHO05D005322 3.9e-70 269.2 330 47.0
THA.LOC104818925 Tarenaya hassleriana HOM05D001780 ORTHO05D005322 3.9e-70 269.2 329 46.2
ECA240G0962 Erigeron canadensis HOM05D001780 ORTHO05D005322 5.0e-70 268.9 330 47.0
C07p39660 Brassica napus HOM05D001780 ORTHO05D005322 6.6e-70 268.5 330 44.8
CsaV3_3G014640 Cucumis sativus L. HOM05D001780 ORTHO05D005322 6.6e-70 268.5 329 46.2
RcHm_v2.0_Chr4g0422271 Rosa chinensis HOM05D001780 ORTHO05D005322 6.6e-70 268.5 329 47.1
PSO170G3623 Papaver somniferum HOM05D001780 ORTHO05D005322 8.6e-70 268.1 330 47.0
PSO210G4510 Papaver somniferum HOM05D001780 ORTHO05D005322 8.6e-70 268.1 330 46.7
Aa31sc180G20 Aethionema arabicum HOM05D001780 ORTHO05D005322 1.5e-69 267.3 330 45.2
BcaC03g17692 Brassica carinata HOM05D001780 ORTHO05D005322 1.5e-69 267.3 309 46.9
FAN12G1911 Fragaria x ananassa HOM05D001780 ORTHO05D005322 1.5e-69 267.3 329 46.8
FAN12G3693 Fragaria x ananassa HOM05D001780 ORTHO05D005322 1.5e-69 267.3 329 46.8
FAN17G0722 Fragaria x ananassa HOM05D001780 ORTHO05D005322 1.5e-69 267.3 329 47.1
TWI09G1280 Tripterygium wilfordii HOM05D001780 ORTHO05D005322 1.5e-69 267.3 329 46.5
Thhalv10003524m.g Eutrema salsugineum HOM05D001780 ORTHO05D005322 1.9e-69 266.9 330 44.8
Sed0021413 Sechium edule HOM05D001780 ORTHO05D005322 2.5e-69 266.5 329 45.9
FvH4_4g18060 Fragaria vesca HOM05D001780 ORTHO05D005322 3.3e-69 266.2 329 46.8
BolC7t44489H Brassica oleracea HOM05D001780 ORTHO05D005322 4.3e-69 265.8 330 44.2
A06p38600 Brassica napus HOM05D001780 ORTHO05D005322 5.6e-69 265.4 330 44.2
FAN07G2352 Fragaria x ananassa HOM05D000639 ORTHO05D005322 5.6e-69 265.4 329 46.8
SalBow2G1454 Salvia bowleyana HOM05D001780 ORTHO05D005322 7.3e-69 265.0 329 46.5
CARHR182680 Cardamine hirsuta HOM05D001780 ORTHO05D005322 9.5e-69 264.6 330 44.8
BraA06t26775Z Brassica rapa HOM05D001780 ORTHO05D005322 1.6e-68 263.8 330 44.2
Carub.0008s0885 Capsella rubella HOM05D001780 ORTHO05D005322 1.6e-68 263.8 330 44.8
Nn3g18527 Nelumbo nucifera HOM05D001780 ORTHO05D005322 1.6e-68 263.8 329 45.6
EL10Ac9g22594 Beta vulgaris HOM05D001780 ORTHO05D005322 2.1e-68 263.5 329 45.6
MD16G1168800 Malus domestica HOM05D001780 ORTHO05D005322 2.1e-68 263.5 329 46.8
Sp2g19410 Schrenkiella parvula HOM05D001780 ORTHO05D005322 2.8e-68 263.1 330 44.5
Psat1g153920 Pisum sativum HOM05D001780 ORTHO05D005322 3.6e-68 262.7 329 47.4
AL8G22430 Arabidopsis lyrata HOM05D001780 ORTHO05D005322 8.0e-68 261.5 330 43.9
BcaB07g34212 Brassica carinata HOM05D001780 ORTHO05D005322 1.4e-67 260.8 322 44.7
A02p37850 Brassica napus HOM05D001780 ORTHO05D005322 1.8e-67 260.4 330 43.9
BraA02t08767Z Brassica rapa HOM05D001780 ORTHO05D005322 1.8e-67 260.4 330 43.9
AUR62029200 Chenopodium quinoa HOM05D001780 ORTHO05D005322 1.8e-67 260.4 329 45.9
Lalb_Chr15g0083491 Lupinus albus HOM05D001780 ORTHO05D005322 1.8e-67 260.4 329 46.2
VMungo1215G2474 Vigna mungo HOM05D001780 ORTHO05D005322 1.8e-67 260.4 330 45.5
Ah.01g003180 Amaranthus hybridus HOM05D001780 ORTHO05D005322 4.0e-67 259.2 332 44.3
AT5G49030 Arabidopsis thaliana HOM05D001780 ORTHO05D005322 5.2e-67 258.8 330 44.2
CSS0032424 Camellia sinensis var. sinensis HOM05D001780 ORTHO05D005322 5.2e-67 258.8 478 38.1
COL.COLO4_34741 Corchorus olitorius HOM05D001780 ORTHO05D005322 5.2e-67 258.8 304 48.0
Glyma.17G026600 Glycine max HOM05D001780 ORTHO05D005322 1.2e-66 257.7 329 46.2
Medtr2g436760 Medicago truncatula HOM05D001780 ORTHO05D005322 1.2e-66 257.7 329 45.6
C02p57010 Brassica napus HOM05D001780 ORTHO05D005322 2.6e-66 256.5 330 43.6
BolC2t11771H Brassica oleracea HOM05D001780 ORTHO05D005322 2.6e-66 256.5 330 43.6
Phvul.003G105600 Phaseolus vulgaris HOM05D001780 ORTHO05D005322 2.6e-66 256.5 330 45.8
arahy.Tifrunner.gnm1.ann1.A68CME Arachis hypogaea HOM05D001780 ORTHO05D005322 4.4e-66 255.8 330 43.6
MBI19_g29219_MAGBIO Magnolia biondii HOM05D001780 ORTHO05D005322 4.4e-66 255.8 330 46.1
SGA_v2.0_scaffold67G22635 Striga asiatica HOM05D001780 ORTHO05D005322 3.7e-65 252.7 329 44.4
Zm00001eb256880 Zea mays HOM05D001780 ORTHO05D005322 3.7e-65 252.7 330 44.8
Os02g0778200 Oryza sativa ssp. japonica HOM05D001780 ORTHO05D005322 1.9e-64 250.4 330 43.6
Lj6g0027734 Lotus japonicus HOM05D001780 ORTHO05D005322 2.0e-63 246.9 329 44.7
Hund03251 Selenicereus undatus HOM05D001780 ORTHO05D005322 2.7e-63 246.5 329 44.4
MBI19_g44149_MAGBIO Magnolia biondii HOM05D001780 ORTHO05D005322 7.8e-63 245.0 329 44.7
arahy.Tifrunner.gnm1.ann1.I7AL06 Arachis hypogaea HOM05D001780 ORTHO05D005322 3.3e-61 239.6 330 42.7
CDE01G0296 Ceratophyllum demersum HOM05D001780 ORTHO05D005322 4.3e-61 239.2 331 42.6
CDE12G0042 Ceratophyllum demersum HOM05D001780 ORTHO05D005322 4.3e-61 239.2 331 43.2
HPP92_016436 Vanilla planifolia HOM05D001780 ORTHO05D005322 3.7e-57 226.1 330 41.2
ATR0796G005 Amborella trichopoda HOM05D001780 ORTHO05D005322 8.3e-57 224.9 330 39.4
Mapoly0002s0241 Marchantia polymorpha HOM05D001780 ORTHO05D005322 2.4e-56 223.4 334 41.3
Pp3c17_5990 Physcomitrium patens HOM05D001780 ORTHO05D005322 3.3e-53 213.0 333 39.9
Haze_01199 Corylus avellana HOM05D001780 ORTHO05D005322 3.4e-50 203.0 329 38.9
SEGI_15432 Sequoiadendron giganteum HOM05D001780 ORTHO05D005322 4.4e-50 202.6 329 37.4
Eucgr.H03911 Eucalyptus grandis HOM05D001780 ORTHO05D005322 7.6e-50 201.8 289 40.5
SMO230G0004 Selaginella moellendorffii HOM05D001780 ORTHO05D005322 3.2e-48 196.4 348 37.1
SMO367G0518 Selaginella moellendorffii HOM05D001780 ORTHO05D005322 9.2e-48 194.9 349 37.0
CBR_g29448 Chara braunii HOM05D001780 ORTHO05D005322 8.6e-46 188.3 155 59.4
PRCOL_00005558 Prasinoderma coloniale HOM05D001780 ORTHO05D005322 1.8e-43 180.6 178 52.2
AagrBONN_evm.TU.Sc2ySwM_340.179 Anthoceros agrestis HOM05D001780 ORTHO05D005322 2.4e-43 180.3 343 34.1
AL8G22410 Arabidopsis lyrata HOM05D001780 ORTHO05D005322 8.9e-43 178.3 285 38.6
AUR62014941 Chenopodium quinoa HOM05D001780 ORTHO05D005322 1.5e-42 177.6 290 39.0
MCO13G360 Micromonas commoda HOM05D001780 ORTHO05D005322 2.2e-41 173.7 190 47.4
HanXRQChr13g0411261 Helianthus annuus HOM05D001780 ORTHO05D005322 4.9e-41 172.6 161 58.4
TPR.G13840 Trifolium pratense HOM05D001780 ORTHO05D005322 3.6e-36 156.4 84 79.8
Cre16.g689871 Chlamydomonas reinhardtii HOM05D001780 ORTHO05D005322 1.4e-35 154.5 156 51.3
Lj6A676G61 Lonicera japonica HOM05D001780 ORTHO05D005322 7.1e-32 142.1 215 42.8
MD13G1254700 Malus domestica HOM05D001780 ORTHO05D005322 1.3e-30 137.9 163 49.1
Pp3s46_440 Physcomitrium patens HOM05D001780 ORTHO05D005322 3.9e-30 136.3 158 43.7
unitig_0.g2594 Utricularia gibba HOM05D001780 ORTHO05D005322 2.5e-29 133.7 237 36.3
Lsat_1_v5_gn_9_91680 Lactuca sativa HOM05D001780 ORTHO05D005322 2.1e-28 130.6 214 40.2
Lsat_1_v5_gn_3_30900 Lactuca sativa HOM05D001780 ORTHO05D005322 5.5e-24 115.9 214 37.9
Cfa026798 Carpinus fangiana HOM05D001780 ORTHO05D005322 2.5e-21 107.1 163 39.3
Cpa.g.sc16.173 Carica papaya HOM05D001780 ORTHO05D005322 4.3e-21 106.3 240 34.6
TPR.G13850 Trifolium pratense HOM05D001780 ORTHO05D005322 1.2e-18 98.2 86 59.3
TAR362G0033 Trochodendron aralioides HOM05D000830 ORTHO05D003205 6.5e-17 92.4 148 40.5
COL.COLO4_04958 Corchorus olitorius HOM05D001780 ORTHO05D005322 1.6e-15 87.8 45 82.2
Lj6A676G60 Lonicera japonica HOM05D001780 ORTHO05D005322 2.1e-15 87.4 46 78.3
COL.COLO4_04959 Corchorus olitorius HOM05D001780 ORTHO05D005322 1.8e-11 74.3 44 77.3
Gohir.D08G082500 Gossypium hirsutum HOM05D001780 ORTHO05D004728 5.9e-10 69.3 44 75.0
Gohir.D13G173925 Gossypium hirsutum HOM05D004225 ORTHO05D004728 5.9e-10 69.3 44 75.0
PGR004G0528 Punica granatum HOM05D001780 ORTHO05D005322 8.5e-09 65.5 45 62.2
MD09G1065200 Malus domestica HOM05D001780 ORTHO05D004373 7.2e-08 62.4 158 27.2
RcHm_v2.0_Chr5g0060201 Rosa chinensis HOM05D001780 ORTHO05D004373 2.1e-07 60.8 187 25.7
Duzib106G1771 Durio zibethinus HOM05D001780 ORTHO05D004373 7.9e-07 58.9 160 26.2
Dinv44242 Davidia involucrata HOM05D001780 ORTHO05D004373 1.0e-06 58.5 158 25.3
Thecc.05G003300 Theobroma cacao HOM05D001780 ORTHO05D004373 1.3e-06 58.2 158 25.9
Zm00001eb275200 Zea mays HOM05D001780 ORTHO05D004373 1.3e-06 58.2 156 23.7
Gohir.A01G231000 Gossypium hirsutum HOM05D001780 ORTHO05D004373 1.8e-06 57.8 158 26.6
Gohir.D01G221100 Gossypium hirsutum HOM05D001780 ORTHO05D004373 1.8e-06 57.8 158 26.6
Gorai.002G267700 Gossypium raimondii HOM05D001780 ORTHO05D004373 1.8e-06 57.8 158 26.6
Sed0001787 Sechium edule HOM05D001780 ORTHO05D004373 1.8e-06 57.8 158 25.3
THA.LOC104803625 Tarenaya hassleriana HOM05D001780 ORTHO05D004373 2.3e-06 57.4 158 24.7
COL.COLO4_09454 Corchorus olitorius HOM05D001780 ORTHO05D004373 3.9e-06 56.6 158 26.6
MELO3C017728.2 Cucumis melo HOM05D001780 ORTHO05D004373 3.9e-06 56.6 158 25.3
CsaV3_4G003190 Cucumis sativus L. HOM05D001780 ORTHO05D004373 3.9e-06 56.6 158 25.3
Lj3g0013099 Lotus japonicus HOM05D001780 ORTHO05D004373 6.7e-06 55.8 158 25.3
COL.COLO4_24691 Corchorus olitorius HOM05D001780 ORTHO05D004373 8.7e-06 55.5 158 25.9


User provided reference genes

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